FastQCFastQC Report
Tue 22 Apr 2025
Site1g_S93_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSite1g_S93_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206230
Total Bases35 Mbp
Sequences flagged as poor quality0
Sequence length56-281
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACCGATTGAATGGTCCGGTGAGGCCTCGGGATTGTGGCCCCCGCCATT199969.695970518353295No Hit
CTACCGATTGAATGGTTTAGTGAGATCCTCGGATTGGTCCCGGCATGGTG154647.498424089608689No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTCGAGATCGTGGCAAGCTTTCTT80363.89662027833002No Hit
CTACCGATTGAACATTTTAGTGAGGTCCTCGGACTGTGAGCCAGGCGGGT48862.369199437521214No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGATTGGCTTAATTGAGGGT43292.099112641225816No Hit
CTACCGATTGGGTGTACCAGTGAGATCCTTGGACTGGCGAGCCTTGTGCG33791.6384619114580805No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGATGAGTTTCCTT30441.4760219172768267No Hit
CTACCGATTGGCTGTGGGATAGAGTTTGGGGGAGGGTGTCTGTTCTTGGC26101.2655772680987247No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGATGAGTCTCCTT21881.0609513649808466No Hit
CTACCGATTGAATGGTTTAGTGAGATCCTCGGATTGGTCGCGGCGCGGCG19480.9445764437763663No Hit
CTACCGATTGAATGATTCGGTGAAAATCTCGGACTTTGGCATGGAACTTT19270.9343936381709741No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGATTGGACCTCTGGAGGTG18340.889298356204238No Hit
CTACCGATTGAACGTGCTGGTGAAGCGTTAGGACTGGAACTTCGGGCCGG17670.8568103573679872No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCCAGTTCACTT17170.8325655821170538No Hit
CAACTGATTGGATGACTCGGTGAAAAATTGGGACTGTGAAGAGACCTGCT17140.8311108956019978No Hit
TCCTCCTCTGGCTAGAAACATCGCCCACGCCGGCCCTTCTGTAGACCTGG16540.8020171653008776No Hit
TCCTCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAG15970.7743781215148136No Hit
TCCTCCATTGTCTAGTATCACAGCACACTCAGGTGGAGCTGTTGATTTAG15840.7680744799495709No Hit
CTACCGATTGAGTGGTCCGGTGAGATCTCGGGATTGATGCCTGGTGCCTT15660.7593463608592348No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGATTGGACCTGCGAGGGCT15630.7578916743441788No Hit
CTACCGATTGGATGGTTTAGTGAGATCCTCGGATTGGCCCCGGCATTCGG14510.703583377782088No Hit
TCCCCCTCTGGCTAGAAACATCGCCCACGCCGGCCCTTCTGTAGACCTGG14450.7006740047519759No Hit
CTACCGATTGAATGGTCCGGTGAGGACTCGGGATTGTGGTTTAGCTCCTT13730.6657615283906319No Hit
TCCCCCATTGTCTAGTATCACAGCACACTCAGGTGGAGCTGTTGATTTAG13540.6565485137952771No Hit
CTACCGATTGAATGGTTTAGTGAGATCTCCGGATTGGCACCATCGCGGCT12510.6066042767783543No Hit
CTACCGATTGAATGTCATAGTGAGGTCCTCGGACTGTTTGGTTGGCGGAT12300.5964214711729622No Hit
TCCCCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAG12240.5935120981428502No Hit
CCCTCCTCTGGCTAGAAACATCGCCCACGCCGGCCCTTCTGTAGACCTGG11360.5508412937012074No Hit
CCCTCCATTGTCTAGTATCACAGCACACTCAGGTGGAGCTGTTGATTTAG11180.5421131746108714No Hit
CCCTCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAG10800.5236871454201619No Hit
TCCTCCATTATCTAGTGGTAATTCTCATTCAGGTCCTGCGGTAGATTTAG10430.5057460117344712No Hit
CCCCCCATTGTCTAGTATCACAGCACACTCAGGTGGAGCTGTTGATTTAG10140.49168404208892985No Hit
CCCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGCT10140.49168404208892985No Hit
CCCCCCTCTGGCTAGAAACATCGCCCACGCCGGCCCTTCTGTAGACCTGG10000.4848955050186685No Hit
TCCCCCATTATCTAGTGGTAATTCTCATTCAGGTCCTGCGGTAGATTTAG9100.4412549095669883No Hit
CCCTCCATTATCTAGTGGTAATTCTCATTCAGGTCCTGCGGTAGATTTAG7250.35154924113853464No Hit
CCCCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGC7030.34088154002812393No Hit
TCCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGCT6860.33263831644280656No Hit
TCCTCCGAACTGATTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA6390.30984822770692916No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTTGGGATCGTGGCGAGTTTCCTT6280.3045143771517238No Hit
CCCCCCATTATCTAGTGGTAATTCTCATTCAGGTCCTGCGGTAGATTTAG6120.2967560490714251No Hit
TCCTCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGCT6040.2928768850312758No Hit
TCCCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGC5850.28366387043592106No Hit
TCCCCCGAACTGATTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA5850.28366387043592106No Hit
CCCCCCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAG5790.28075449740580904No Hit
CCCTCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGCT5670.274935751345585No Hit
CTACCGATTGAATGGTTTAGTGAGGTTATCGGATCCTAAGACCAGACATG5550.269117005285361No Hit
TCCTCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGC5450.2642680502351743No Hit
TCCTCCGAACTGATTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA5380.26087378170004366No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGCGCGCGGCTTCG5370.260388886195025No Hit
TCCTCCATTGTCTAGTATTACAGCACACTCGGGTGGAGCTGTTGATTTAG4860.23565921543907287No Hit
TCCCCCGAACTGATTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA4850.23517431993405422No Hit
CCCTCCCTGTCAGCTGCTACTGCCCACAGAGGAAGATCTGTCGACGTAGC4830.23420452892401689No Hit
TCCCCCGAACTGATTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA4800.23274984240896088No Hit
TCCTCCGAACTGATTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA4760.2308102603888862No Hit
CTACCGATTGAATGTTTCGGTGAAGATTCCGGACCGCGACGCCAGAGCGC4760.2308102603888862No Hit
TCCTCCGAACTGATTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA4690.2274159918537555No Hit
CTACCGATTTGAGTGGTCCGGTGAATCTTTTGGACTGTGCACGGCTTCGT4640.22499151432866216No Hit
CCCTCCGAACTGATTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA4590.22256703680356882No Hit
CTACCGATTGAGTGATCCGGTGAATAATTCGGACTGCAGCAGTGTTCAGT4490.21771808175338214No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCCAGTTTCCTT4460.21626339523832613No Hit
CCCCCCGAACTGATTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA4380.21238423119817681No Hit
TCCCCCGAACTGATTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA4280.2075352761479901No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGATTGGACGTCGAGAGGTT4110.19929205256267274No Hit
CTACCGATCGAGTGTTTAGGTGAATTTGATGGACGTAAGGAAGTCAAATA4090.1983222615526354No Hit
CTACCGATTGAGTGATCCGGTGAACTTTTTGGACGTTGGCGTATGCTGAG4080.19783736604761676No Hit
TCCCCCGAACTGATTCTTCGGCCATCCCGAAGTCTACTGTCTCTTATACA4010.19444309751248606No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCGAGTTTCCTT3990.19347330650244873No Hit
TCCTCCGAACTGATTCTTCGGCCATCCCGAAGTCTACTGTCTCTTATACA3960.19201861998739272No Hit
TCCCCCATTGTCTAGTATTACAGCACACTCGGGTGGAGCTGTTGATTTAG3950.19153372448237405No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGACCAGTGCCTTT3940.19104882897735537No Hit
CTACCGATTGGACGTTTTAGTGAGACATTTGGACTGGGTCAGAGTAGTCG3760.18232070988701934No Hit
CCCCCCGAACTGATTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA3670.17795665034185132No Hit
TCCCCCGAACTGGTTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA3630.17601706832177666No Hit
TCCTCCGAACTGATTCTTTGGCCACCCCGAGGTCTACTGTCTCTTATACA3590.174077486301702No Hit
CATCTTAGTTGTGGGTGGGTGAGGCTACCTCTCTATGGGGTATTCGAGCC3500.16971342675653397No Hit
TCCTCCGCTAAGGTCCAACATCGCCCACAGAGGGATGTCGGTGGACTTTG3470.16825874024147797No Hit
CCCCCCGAACTGATTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA3450.1672889492314406No Hit
TCCTCCGAACTGATTTTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA3440.16680405372642196No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGATTGGACCTGCGAGGGTT3440.16680405372642196No Hit
CTACCGATTGAATGGTTTAGTGAGATCCTCGGACCGGCCCCTTCACGGCG3430.16631915822140328No Hit
CCCTCCGAACTGATTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA3390.16437957620132862No Hit
TCCCCCGAACTGATTCTTTGGCCACCCCGAGGTCTACTGTCTCTTATACA3380.16389468069630994No Hit
TCCTCCGAACTGGTTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA3360.1629248896862726No Hit
CTACCGATTGAATGGCTTAGTGAGCTCTCTGGACTGTGTTGCGTGTCGTA3340.16195509867623528No Hit
CCCTCCGAACTGATTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA3320.16098530766619792No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCGAGTTCCCTT3310.16050041216117927No Hit
CCCTCCGAACTGATTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA3280.15904572564612326No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGACCAGTTTCCTT3230.15662124812102993No Hit
CCCCCCGAACTGATTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA3170.1537118750909179No Hit
CCCTCCATTGTCTAGTATTACAGCACACTCGGGTGGAGCTGTTGATTTAG3160.15322697958589923No Hit
TCCTCCGAACTGGTTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA3090.14983271105076856No Hit
TCCTCCGAACTGATTTTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA3090.14983271105076856No Hit
TCCCCCGAACTGATTTTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA3070.14886292004073123No Hit
CTACCGATTGAACGGTTTAGTGAGGGCCTCGGATTGGTCTCGGCCCGCCC3040.1474082335256752No Hit
TCCCCCGAACTGATTCTTCGGCCATCCCGAGGTCTACTGTCTCTTATACA3020.1464384425156379No Hit
CTACCGATTGAGTGGTTTAGTGAGGCTCACGGACCGCTGGCGGCACCCGG2990.14498375600058186No Hit
TCCTCCGAACTGATTCTTCGGCCATCCCGAGGTCTACTGTCTCTTATACA2970.14401396499054453No Hit
CCCTCCGAACTGATTCTTCGGCCATCCCGAAGTCTACTGTCTCTTATACA2940.14255927847548852No Hit
TCCTCCGAACTGATTTTTCGGCCATCCCGAAGTCTACTGTCTCTTATACA2920.1415894874654512No Hit
TCCCCCGAACTGATTTTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA2860.13868011443533917No Hit
TCCCCCGAACTGATTCTTTGGCCATCCCGAAGTCTACTGTCTCTTATACA2860.13868011443533917No Hit
TCCCCCGCTAAGGTCCAACATCGCCCACAGAGGGATGTCGGTGGACTTTG2810.13625563691024584No Hit
CTACCGATTGAATGTTTCGGTGAAGATTCCGGACTGTGGCTCGCGTGCTT2790.1352858459002085No Hit
TCCTCCGAACTGATTCTTTGGCCATCCCGAAGTCTACTGTCTCTTATACA2780.13480095039518983No Hit
CTAGCGATTGAATGGTCCGGTGAGGCCTCGGGATTGTGGCCCCCGCCATT2770.13431605489017118No Hit
CCCCCCGAACTGATTCTTCGGCCATCCCGAAGTCTACTGTCTCTTATACA2770.13431605489017118No Hit
CATGGGAATTGAACTCATTCGAAGCGGGAATGCTAAAGTAGCTACCCTCC2730.1323764728700965No Hit
CCCTCCGAACTGATTTTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA2730.1323764728700965No Hit
TCCCCCGAACTGGTTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA2710.13140668186005916No Hit
CCCCCCATTGTCTAGTATTACAGCACACTCGGGTGGAGCTGTTGATTTAG2710.13140668186005916No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGATTGGGCCTGTCTTGGTT2710.13140668186005916No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGTGCTTGGTCTTG2710.13140668186005916No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCCGGTGCCTTA2700.13092178635504048No Hit
TCCCCCGAACTGATTTTTCGGCCATCCCGAAGTCTACTGTCTCTTATACA2700.13092178635504048No Hit
CCCTCCGAACTGGTTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA2700.13092178635504048No Hit
TCCTCCGAACTGGTTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA2690.13043689085002183No Hit
CCCCCCGAACTGATTTTTCGGCCACCCCGAGGTCTACTGTCTCTTATACA2680.12995199534500315No Hit
CTACCGATTGGCTGTGGGATAGAGCTTGGGAGAGGGAAGCTCGTTCTTGG2680.12995199534500315No Hit
TCCTCCGAACTGGTTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA2640.12801241332492846No Hit
TCCCCCTTTATCAGGACCTCAAACTCATTCTGGTGGGTCTGTAGATTTAG2530.12267856276972312No Hit
TCCTCCTTTATCAGGACCTCAAACTCATTCTGGTGGGTCTGTAGATTTAG2510.1217087717596858No Hit
CCCCCCGAACTGATTCTTTGGCCACCCCGAGGTCTACTGTCTCTTATACA2490.12073898074964845No Hit
TCCCCCGAACTGGTTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA2480.12025408524462977No Hit
TCCTCCTCTAAGTCATATTACGAGCCACTCTGGTGGTGCAGTTGATTTAG2470.1197691897396111No Hit
CTACCGATTGAATGGTCCGGTGAAGACTCGAGATTTTGGCTTAGTTGCTT2470.1197691897396111No Hit
TCCTCCGAACTGATTTTTCGGCCATCCCGAGGTCTACTGTCTCTTATACA2450.11879939872957378No Hit
CTACCGATTGGATGGTTTAGTGAGATCCTCGGATTGGACCCTGCATGGTG2440.11831450322455511No Hit
CCCCCCGAACTGGTTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACA2430.11782960771953643No Hit
TCCTCCGAACTGATTCTTTGGCCATCCCGAGGTCTACTGTCTCTTATACA2420.11734471221451777No Hit
CATCTTAGTTGGGGGTGGGTGAGGCTGCGCTTTATGGCGTATTCGAGCCT2400.11637492120448044No Hit
CCCCCCGAACTGATTCTTCGGCCATCCCGAGGTCTACTGTCTCTTATACA2370.11492023468942442No Hit
TCCTCCGAACTGATTTTTTGGCCACCCCGAGGTCTACTGTCTCTTATACA2360.11443533918440575No Hit
TCCCCCGAACTGATTTTTTGGCCACCCCGAGGTCTACTGTCTCTTATACA2350.1139504436793871No Hit
CTACCGATTGAATGGCTTAGTGAGCTCTCTGGACTGTTGCATTCCGTTGG2350.1139504436793871No Hit
CTACCGATTGAATGGTTTAGTGAGTTCCTCGGATTGGTCCCGGCATGGTG2330.11298065266934976No Hit
TCCTCCGAACTGATTTTTTGGCCATCCCGAAGTCTACTGTCTCTTATACA2320.11249575716433108No Hit
CCCTCCGCTAAGGTCCAACATCGCCCACAGAGGGATGTCGGTGGACTTTG2320.11249575716433108No Hit
CCCTCCGAACTGATTCTTCGGCCATCCCGAGGTCTACTGTCTCTTATACA2250.10910148862920041No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGACTGGAATTAGGTTAGTT2250.10910148862920041No Hit
CTACCGATTGAATGGTCCGGTGAGGACTCGGGATTGTGGTTTGGCTCCTT2240.10861659312418175No Hit
TCCTCCGAACTGGTTCTTCGGCCATCCCGAAGTCTACTGTCTCTTATACA2230.10813169761916307No Hit
CCCCCCGCTAAGGTCCAACATCGCCCACAGAGGGATGTCGGTGGACTTTG2210.10716190660912572No Hit
TCCCCCGAACTGATTTTTCGGCCATCCCGAGGTCTACTGTCTCTTATACA2200.10667701110410707No Hit
CCCTCCGAACTGATTCTTTGGCCACCCCGAGGTCTACTGTCTCTTATACA2190.10619211559908841No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGCGCGCAGCTTCG2180.10570722009406973No Hit
TCCCCCGAACTGGTTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACA2120.10279784706395771No Hit
CTACCGATTGAGTGGTTTAGTGAGATCCCCGGATCGGCGCCGACATGGGG2090.10134316054890172No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)