FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5u_S126_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5u_S126_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86986
Total Bases26.1 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC52

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC1013711.6535994297933No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT48045.522727795277401No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC41584.7800795530315225No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG38634.440944519807785No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC36554.201825581127998No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG21062.421079254132849No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC18362.110684477961971No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAACCCT12901.4829972639275286No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC9841.1312165176005333No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT9471.0886809371623019No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG9381.0783344446232725No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC7650.8794518658174879No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAATTTTC6750.7759869404271952No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT6470.743797852527993No Hit
GTACACACCGCCCGTCGCTAGTACCGATTTCGAGTGGTCCGGTGAACCTT6250.718506426321477No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA5700.655277860805187No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGCAATCCGGTGAATATTTC5640.6483801991125009No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGATTTCC5410.6219391626238705No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGTTTAGTGAGGGCCTC4800.5518129354148944No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT4540.5219230680799208No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT4240.48743475961648997No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGGTCCGGTGAATTGATC4080.4690409951026602No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC4070.4678913848205458No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT4000.4598441128457453No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC3670.4219069735359713No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTC3210.36902490055871057No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT2830.3253397098383648No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGACCTCC2710.31154438645299243No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGGGTGGTCCGGTGAACCCT2690.3092451658887637No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC2640.3034971144781919No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGCTTTTT2600.2988986733497344No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGGTCCGGTGAAATGTTC2500.2874025705285908No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGTTCAA2460.28280412940013333No Hit
GTACACACCGCCCGTCGCACATACCGATTGAATGGTCCGGTGAAGCCTCG2340.26900880601476096No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT2200.2529142620651599No Hit
GTACACACCGCCCGTCTCTACTACCGATTGAATGTTTTAGTGAGGTCCTC2100.2414181592440163No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT2040.2345204975513301No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC1970.22647322557652955No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTC1950.22417400501230084No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT1450.16669349090658267No Hit
GTACACACCGCCCGTCGCTTCTACCGATTGAGTGTTCCGGTGAATTGTCT1390.15979582921389648No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT1380.15864621893178213No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGCTCAGGTGAGCCATTC1350.15519738808543904No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG1300.1494493366748672No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATGTTC1230.14140206470006667No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGGCCCCC1160.13335479272526615No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTT1160.13335479272526615No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGCTCAGGTGAATAGTAT1140.13105557216103741No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGATTAGTGAGATCCCC1140.13105557216103741No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT1110.12760674131469432No Hit
GTACACACCGCCCGTCGCATCTACCGATTGAATGGCCCGGTGAAGACCTG1080.12415791046835123No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA1000.11496102821143632No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAAGCTT1000.11496102821143632No Hit
GTACACACCGCCCGTCTCTCCTACCGATTGAGTGATCCGGTGAATAATTC950.1092129768008645No Hit
GTACACACCGCCCGTCTCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT950.1092129768008645No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGATCCGGTGAACCAT920.10576414595452141No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)