FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5r_S123_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5r_S123_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196462
Total Bases59.1 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC55

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG2113410.757296576437174No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG144947.377508118618358No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC132926.765684967067423No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC84424.297014180859403No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT84014.276145005140943No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT63823.2484653520782647No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC43202.198898514725494No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC40442.058413331840254No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC34261.7438486832059126No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGCTC34081.734686606061223No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT27841.417067931711985No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG25551.3005059502601013No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT23491.1956510673819873No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG22031.1213364416528386No Hit
GTACACACCGCCCGTCGCTACTACTGATTGGGTGTATGAGCGAGGTTCGC18510.9421669330455762No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT17090.869888324459692No Hit
GTACACACCGCCCGTCGCAGCTACTGATTGAATACATCGGTGAAATATTG16730.8515641701703128No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAACGATTCGGTGAAATCTCG16340.8317130030234855No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAAGCTT14660.7462002830063829No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC13510.687664790137533No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT13410.6825747472793721No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC12610.6418544044140851No Hit
GTACACACCGCCCGTCGCACCAACCGATTGAATGGTTTGGTGAAATATTG11800.6006250572629821No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTTG11650.5929899929757408No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT10050.511549307245167No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCGAG9370.4769370158096731No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC9150.4657389215217192No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTT8920.45403182294794925No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGGCCCCC8470.4311266300862253No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATTGTTC8260.4204375400840875No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGGGTGGTCCGGTGAACCCT7800.39702334293654756No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGATTAGTGAGATCCCC6900.3512129572130997No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGACCTTG6530.3323797986379045No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAACCTT5700.2901324429151694No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA5480.27893434862721544No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC5440.2768983314839511No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGTTTAATGAGGTTATT4350.22141686432999766No Hit
GTACACACCGCCCGTCGCTACTACTGATTGGGTGTTCAAGTGAGATCCTT4200.21378180004275635No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAGATCTCG4130.21021877004204376No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT4070.20716474432714724No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTTTCT4040.20563773146969896No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTTCGGTGAAATCCTC3840.19545764575337726No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGATTTCC3710.18884059003776812No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC3660.18629556860868768No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAATCTTC3510.1786605043214464No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC3510.1786605043214464No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG3470.17662448717818205No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAATCTTT3410.17357046146328553No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATCATTCGGTGAGGATCTC3280.1669534057476764No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGTCTCG2990.1521922814590099No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTCCGGTGAGGCCTTG2840.1445572171717686No Hit
GTACACACCGCCCGTCGTTTCTTCCGACTGATACTCATTGTGAGTTGCAA2790.14201219574268817No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT2710.13794016145615948No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTT2520.12826908002565382No Hit
GTACACACCGCCCGTCTCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT2510.12776007573983775No Hit
GTACACACCGCCCGTCACACCATGGGAGTTGGTTCTACCCGACGACGCTG2360.12012501145259644No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAGGCCTCG2250.11452596430861949No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGATTTAGTGAGGTCTTG2210.11248994716535513No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGCTGGAC2150.10943592145045862No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGATGTGGTGAACATT2060.10485488287811384No Hit
GTACACACCGCCCGTCGCACCAACCGATTGAATGGTTCGGTGAAGAATCT1980.10078284859158515No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAAGCCTCG1970.10027384430576905No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)