FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5m_S110_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5m_S110_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122031
Total Bases36.7 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC53

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG2248718.42728487023789No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC88947.288311986298564No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC83996.88267735247601No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT44793.6703788381640736No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT37833.100031959092362No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC36743.010710393260729No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTC26922.20599683686932No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG24632.0183396022322198No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT23431.9200039334267522No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT14451.1841253451991707No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA13431.1005400267145233No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT13201.081692356860142No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC9860.8079914120182576No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG7020.5752636625119847No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC6200.5080676221615819No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC4070.33352181003187714No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT4020.329424490498316No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGACCCAC3950.32368824315133043No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC3780.3097573567372225No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGCTGGAC2960.24256131638681974No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT2880.23600560513312188No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGACGTTTTAGTGAGACATTT2720.22289418262572627No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAACCCTCG2720.22289418262572627No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGGTCCGGTGAACTGGTC2630.21551900746531621No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC2190.17946259556997812No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTTG2140.17536527603641697No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTTTCT2050.1679901008760069No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATTCGGCGAATGCTTC1890.15487867836861124No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAGAATTTC1810.14832296711491344No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAAGCTT1460.11964173037998542No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAAATTGAT1410.11554441084642426No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG1390.11390548303299981No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGATTTAGTGAGGTCTTG1350.1106276274061509No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG1330.10898869959272645No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTCCGGTGAGGCCTCG1290.10571084396587753No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC1280.10489138005916529No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTCATAGTGAGGTCCTC1270.10407191615245306No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)