FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5k_S108_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5k_S108_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62184
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC53

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC844113.574231313521162No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG41066.602984690595652No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT29534.74880998327544No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC26314.230991895021227No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT16442.643766885372443No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC16102.5890904412710665No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC13372.15007075775119No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG12221.9651357262318283No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC11901.9136755435481794No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG9541.5341566962562718No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT8051.2945452206355332No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC6821.096745143445259No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC6551.0533256143059309No Hit
GTACACACCGCCCGTCGCTAGTACCGATTTCGAGTGGTCCGGTGAACCTT6040.9713109481538659No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT4360.7011449890647112No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC4270.686671812684935No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGATCCGGTGAGCTATTC3850.6191303229126464No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGTGTTGGTGAGGAGCTC3300.5306831339251254No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC2860.4599253827351087No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCTCC2780.4470603370641966No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGATTTCC2740.44062781422874053No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT2570.4132895921780523No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTACTC2540.40846520005146014No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGGTCCGGTGAACTGGTC2250.36182940949440373No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGACGTTTTAGTGAGACATTT1900.30554483468416316No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGCATTAGGGTGAAATCTTC1760.28303100476006693No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC1730.27820661263347485No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGACCCAC1660.26694969767142673No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT1600.2573009134182426No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGCTTAGTGAGTTTTAC1420.2283545606586903No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT1320.21227325357005017No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG1300.20905699215232215No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTTCGGTGAACTTTTT1200.19297568506368198No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC1160.1865431622282259No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGCTCAGGTGAATAGTAT1070.17206998584844976No Hit
GTACACACCGCCCGTCGCTGCTACCGATTGAGTGATCCGGTGAGTAATTC880.14151550238003346No Hit
GGTACTGGTTGAACTGTTTATCCTCCTCTTTCAAGAAATATTGCCCATGC820.13186671812684933No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAGAATTTC770.12382606458252927No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT740.11900167245593722No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATTGTCCGGTGAGGCCTCG720.11578541103820918No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT700.11256914962048115No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA700.11256914962048115No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT650.10452849607616108No Hit
GGTACAGGTTGAACTGTTTATCCTCCTCTTTCAAGAAATATTGCCCATGC630.10131223465843305No Hit
GGTACAGGTTGAACAGTTTATCCTCCTCTTTCAAGAAATATTGCCCATGC630.10131223465843305No Hit
GGTACTGGTTGAACTGTTTATCCCCCTCTTTCAAGAAATATTGCCCATGC630.10131223465843305No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)