FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5f_S96_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5f_S96_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8751
Total Bases2.6 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC52

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC166919.072106045023425No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC5436.205005142269455No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC4685.347960233116216No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG2973.393897840246829No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG1181.3484173237344304No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT840.9598902982516283No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT750.8570449091532397No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC670.7656267855102274No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT620.7084904582333448No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGTTCCTC530.605645069134956No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG410.4685178836704377No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG320.3656724945720489No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGACCCAC320.3656724945720489No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT250.28568163638441324No Hit
GTACACACCGCCCGTCGCTACGACCGATTGTTCCAGTTAATGAGCGATAT220.25139984001828364No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA190.21711804365215404No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC180.2056907781967775No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC180.2056907781967775No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT170.19426351274140097No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC160.18283624728602446No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTTTCT160.18283624728602446No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAGAATTTC150.17140898183064793No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT140.1599817163752714No Hit
GTACTCACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC130.1485544509198949No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA130.1485544509198949No Hit
GTACACACCGCCCGTCTCTACTACCGATTGGATGGTTTAGTGAGATCCTC130.1485544509198949No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT120.13712718546451835No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC120.13712718546451835No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT120.13712718546451835No Hit
GTACACACCGCCCGTCGCTACTACCGCTTGGATGGTTTAGTGAGATCCTC120.13712718546451835No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAAATTGAT120.13712718546451835No Hit
GTAGACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC120.13712718546451835No Hit
GTCCACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC110.12569992000914182No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAACCCTCG110.12569992000914182No Hit
GTAGACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC110.12569992000914182No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC110.12569992000914182No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCTTAGTGAGGTCCTC100.11427265455376527No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCAC100.11427265455376527No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGTTGGTTTAGTGAGATCCTC100.11427265455376527No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGCTC100.11427265455376527No Hit
GGAACTGGTTGAACAGTTTATCCTCCTCTTTCAAGAAATATTGCCCATGC90.10284538909838875No Hit
GTACACACCGCCCGTCGCTACTACGGATTGGATGGTTTAGTGAGATCCTC90.10284538909838875No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGCTGGAC90.10284538909838875No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)