FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5ee_S136_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5ee_S136_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322086
Total Bases96.9 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC56

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG3880512.048024440677334No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC243647.564439311239855No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT224036.955595710462423No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG172795.364716255906807No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC146424.5459908223269565No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT123593.83717392249275No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC104933.257825549697907No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGATTTAGTGAGGCCCTC69402.154704023149097No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT63871.9830107486820288No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT59521.8479536521301763No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC51221.590258502387561No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTC51161.5883956458833977No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC45471.4117347540718939No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC40181.2474929056214799No Hit
GTACACACCGCCCGTCGCAGCTACCGATTGAATGTCTCGGTGAAGACTTG38581.1978167321771205No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT29290.9093844501158075No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC28530.8857882677297368No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC27520.8544301832429848No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA27320.8482206615624398No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCGAG26140.8115844836472246No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT23960.7439006973292848No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTTCGGTGAGTTATCT21470.6665921524065002No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTGATGAATTGCGC18900.5867997988114976No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC18610.5777959923747074No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT18080.5613407599212633No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC17980.5582359990809908No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAACCCT16250.504523636544277No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGGCCTCC16240.5042131604602498No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGATTTAGTGAGAACTTC16230.5039026843762225No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATAGTTTAGTGAGGCACTT13400.4160379525965115No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG11220.3483541662785716No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGCTCAGGTGAGCCATTC9170.28470656905298586No Hit
GTACACACCGCCCGTCGTTTCTTCCGACTGATACTCATTGTGAATTACGG8680.2694932409356507No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGCAATCCGGTGAATAATTC8560.2657675279273238No Hit
GTACACACCGCCCGTCGCAGCTACTGATTGAATACATCGGTGAAATATTG7630.23689325211278975No Hit
GTACACACCGCCCGTCGTTTCTTCCGACTGATACTCATTGTGAGTTGCAA7590.23565134777668076No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC6970.21640183056699142No Hit
GTACACACCGCCCGTCGCACCAACCGATTGAATGGTTTGGTGAAATATTG6270.1946685046850841No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTTG4780.14840756816502423No Hit
GTACACACCGCCCGTCAAACCACTCGAGCAGTGCTTAAGTGAGTCATAGC4410.1369199530560161No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAGGCCTCG4090.12698471836714417No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGATTCGGTGAAAATCTC4000.12419043361089895No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGCTGGAC3880.12046472060257198No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAAGCCTCG3870.12015424451854474No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATACTTC3770.11704948367827225No Hit
GTACACACCGCCCGTCGCTCCTACCGATTCAATGAATCGATGAACTGGAT3720.11549710325813602No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGACGTTTTAGTGAGACATTT3650.11332377066994528No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC3630.11270281850189079No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTTTCT3570.11083996199772732No Hit
GTACACACCGCCCGTCTCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT3340.10369901206510063No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)