FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5c_S89_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5c_S89_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61812
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC52

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT55679.006341810651653No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC43957.110269850514463No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC30154.877693651718113No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT27584.4619167799132855No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG27234.405293470523523No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT14722.3814146120494404No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG14212.2989063612243577No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT13312.153303565650683No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC11251.8200349446709376No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC10311.6679609137384328No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC8971.4511745292176275No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT8581.3880799844690352No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG8361.3524881899954702No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT8141.3168963955219053No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGTATTAGTGAGGTCCTC4030.6519769624021226No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAAACTTC3690.5969714618520676No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC3610.5840289911344076No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC2780.44975085743868504No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGATTAGTGAGGACATC2740.44327962207985505No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGATGGATGAGGCTGCGT2720.44004400440044No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG2190.3543001358959425No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC2180.35268232705623503No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGCTC2090.33812204749886754No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATGTTC1870.3025302530253025No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA1810.29282339998705753No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTC1730.2798809292693975No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT1690.2734096939105675No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCTTCG1640.26532064971203No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT1510.24428913479583253No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGACCCAC1450.2345822817575875No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC1410.2281110463987575No Hit
GTACACACCGCCCGTCGTTTCTTCCGACTGATACTCATTGTGAGTTGCAA1390.22487542871934252No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT1140.18443020772665503No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAATCTTC1070.17310554584870252No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTT970.1569274574516275No Hit
GTACACACCGCCCGTCGCTACTACCGGTTGAACATTTTAGTGAGGTCCTC890.1439849867339675No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGTGTTGGTGAGGAGCTC890.1439849867339675No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC830.1342781336957225No Hit
GTACACACCGCCCGTCGCACCAACCGATTGAATGGTTTGGTGAAATATTG780.12618908949718502No Hit
GTACACACCGCCCGTCTCTACTACCGATTGAACATTTTAGTGAGGTCCTC740.119717854138355No Hit
GTACACACCGCCCGTCGCAGCTACTGATTGAATACATCGGTGAAATATTG740.119717854138355No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAACCCTCG650.10515757458098751No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT630.10192195690157252No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)