FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5b_S88_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5b_S88_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences203100
Total Bases61.1 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC57

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC3945719.4273756770064No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT2293411.291974396848843No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC123806.095519448547513No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG63103.1068439192516No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT61793.0423436730674545No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC48192.3727227966518956No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA28371.3968488429345152No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG19290.9497784342688331No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT18430.9074347612013787No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC17640.8685376661742983No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC15950.7853274249138356No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGATTTAGTGAGGCCTCC10860.534711964549483No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT10690.5263417035942886No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT7950.39143279172821277No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG7810.3845396356474643No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG7800.38404726735598227No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT6950.34219596258000984No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC6850.3372722796651896No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGACCCAC6670.32840965041851305No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGATTCGGTGAACCTT6400.3151157065484983No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC5790.28508124076809455No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC4340.21368783850320042No Hit
GTACACACCGCCCGTCTCTACTACCGATTGAATGTCATAGTGAGGTCCTC4000.19694731659281145No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC3960.1949778434268833No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAGAATTTC3840.18906942392909895No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAAATTGAT3550.17479074347612014No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC3370.16592811422944362No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGGGTGGTCCGGTGAACCCT3000.14771048744460857No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAAGCTT2890.14229443623830626No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT2580.12703101920236337No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATTGTGAGGTCCTC2550.12555391432791727No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATGTTC2550.12555391432791727No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGATGAATATCGT2500.12309207287050715No Hit
GTACACACCGCCCGTCGCTTGTATCGATTGAGTGATCCGGTGAACTTTCT2450.12063023141309699No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT2350.11570654849827672No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT2310.1137370753323486No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTTTCT2230.10979812900049238No Hit
GTACACACCGCCCGTCGCTACTACCGATTTGAGTGGTCCGGTGAATCTTT2140.10536681437715412No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG2130.10487444608567208No Hit
GTACACACCGCCCGTCTCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT2130.10487444608567208No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAACCCTCG2090.10290497291974396No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT2080.10241260462826195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)