FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5a_S87_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5a_S87_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences160579
Total Bases48.3 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC58

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC6353539.566194832450066No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT2009312.51284414524938No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC102086.356995622092552No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG68454.262699356702932No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT42122.623007989836778No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC31221.9442143742332434No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC12460.7759420596715636No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG12040.7497867093455558No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT11790.7342180484372178No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGACGTTTTAGTGAGACATTT10310.6420515758598571No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGACCCAC7710.48013750241314246No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT7500.46705982725013856No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG6810.42409032314312584No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC5980.3724023689274438No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG5870.36555215812777514No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC5360.33379208987476566No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT4720.29393631794942054No Hit
GTACACACCGCCCGTCTCTACTACCGATTGAATGTCATAGTGAGGTCCTC4680.29144533220408647No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA4220.26279899613274466No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC3760.2341526600614028No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATTGTGAGGTCCTC2970.18495569159105485No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAGAATTTC2890.17997372010038673No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC2760.17187801642805098No Hit
GTACACACCGCCCGTCGCTACTACCGATTTGAGTGGTCCGGTGAATCTTT2610.16253681988304822No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGTCATAGTGAGGTCCTC2340.14572266610204324No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAAATTGAT2310.14385442679304267No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT2200.13700421599337398No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGGGTGGTCCGGTGAACCCT2160.1345132302480399No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC2130.13264499093903934No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT2120.13202224450270583No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTC2070.12890851232103823No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTCCGGTGAGGCCTCG1820.1133398514127003No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT1780.11084886566736622No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTTTCT1770.11022611923103269No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGGGGTCCTC1750.10898062635836567No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAAGCTT1720.10711238704936511No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)