FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5J_S107_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5J_S107_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70
Total Bases21 kbp
Sequences flagged as poor quality0
Sequence length301
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTC3550.0No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCTTC1217.142857142857142No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTC68.571428571428571No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTC45.714285714285714No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTC22.857142857142857No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTTCGACTTTTACTTC11.4285714285714286No Hit
TAGACTTCGGGATGGCCGAAGAACCAAAAAAGGTGCTGGAACAAAATAGG11.4285714285714286No Hit
TGATCCTTCTGCAGGTTCACCTACAGATACCTTGTTACGACTTAACCCTC11.4285714285714286No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAGCCTTGTTACGACTTTTACTTC11.4285714285714286No Hit
TGGACTTCGGGATGGCCAAAAAACCAAAATAAGTGCTGATATAAAATAGG11.4285714285714286No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCCTGTTACGACTTTTACTTC11.4285714285714286No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTA11.4285714285714286No Hit
TAGACCTCGGGATGGCCAAAGAATCAAAACAAATGCTGATAAAGAACAGG11.4285714285714286No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCTTC11.4285714285714286No Hit
TGATCCTTCTGCAGGGTTCACCTACGGAAACCTTGTTACGACTTCACCTT11.4285714285714286No Hit
TGATCCTTCTGCAGGTTCACCTACAGAAACCTTGTTACGACTTCACCTTC11.4285714285714286No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)