FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site5J_S107_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site5J_S107_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70
Total Bases21 kbp
Sequences flagged as poor quality0
Sequence length301
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC2840.0No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG912.857142857142856No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTC57.142857142857142No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC45.714285714285714No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT22.857142857142857No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT22.857142857142857No Hit
GGTACTGGATGAACTGTATACCCTCCTCTAAGTCATATTACGAGCCACTC11.4285714285714286No Hit
GTACACACCGCCCGTCGCACCTGCCGATTGAATGGTCCGGTGGAATCTTC11.4285714285714286No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC11.4285714285714286No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG11.4285714285714286No Hit
GGAACAGGATGAACAGTTTATCCTCCTTTAAGTAGTGCACAGGCTCATTC11.4285714285714286No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCAC11.4285714285714286No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATTATGAGGTGAATTGCTC11.4285714285714286No Hit
GTACACACCGCCCGTCGCCCCTACCGATTTCGAGTGGTCCGGTGAATCTT11.4285714285714286No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGACGCAC11.4285714285714286No Hit
GGAACTGGTTGAACAGTTTATCCTCCTCTAAGTCATATTACGAGCCACTC11.4285714285714286No Hit
GTACACACCGCCCGTCGTTACTACCGATTGAATGTCATAGTGAGGTCCTC11.4285714285714286No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC11.4285714285714286No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGATCCGGTGAATAATTC11.4285714285714286No Hit
TACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTCG11.4285714285714286No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC11.4285714285714286No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCTGGTGAGGCCTCG11.4285714285714286No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC11.4285714285714286No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG11.4285714285714286No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC11.4285714285714286No Hit
GTACACACCGCCCGTCGCACCTACTGATTGGGTGCTTAGGTGAGGGCTTT11.4285714285714286No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)