FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1y_S120_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1y_S120_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157509
Total Bases47.4 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC52

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG2652816.8422121910494No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG126928.057952243998756No Hit
GTACACACCGCCCGTCGCTACGACCGATTGTTCCAGTTAATGAGCGATAT52373.324889371400999No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC42442.6944492060771132No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT33382.119243979709096No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC32232.0462322787904186No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC28391.8024366861576164No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC23661.5021363858573162No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC19711.2513570653105537No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC17861.133903459484855No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG13350.8475706150124754No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT12250.7777333358728707No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC11060.7021820975309347No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGCTC8470.5377470493749563No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAGATCTCG7480.4748934981493121No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT7170.45521208311905986No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT6900.438070205512066No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTTG6560.41648413741436996No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC6500.41267483127948246No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGCTCAGGTGAGCCATTC6350.40315156594226365No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC6200.3936283006050448No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT5980.37966084477712386No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC5630.35743989232361323No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG5570.3536305861887257No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTCTGGTGAAATCATT4880.3098235656375191No Hit
GTACACACCGCCCGTCGCTGCGACCGATTGTTCTAGTTAATGAGCCATAT4820.3060142595026316No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTACTT4800.3047444907910024No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT4650.2952212254537836No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG4360.2768095791351605No Hit
GTACACACCGCCCGTCGCACCAATCGATTGAGTGATCTGGTGAAAATGCA4290.2723653886444584No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT4260.2704607355770146No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTCCGGTGAGGCCTTG4250.26982585122120006No Hit
GTACACACCGCCCGTCGCTAGTACCGATTTCGAGTGGTCCGGTGAACCTT4100.26030258588398125No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGTATTAGTGAGGTCCTC3980.2526839736142062No Hit
GTACACACCGCCCGTCGCTACTACTGATTGAACGTTTTAGTGAGGTATTT3350.2126862591978871No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT3210.20379787821648288No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGACCCTC2970.18856065367693275No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGACGTTTTAGTGAGACATTT2970.18856065367693275No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAGGCCTCG2770.175862966560641No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTT2690.17078389171412425No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA2480.1574513202420179No Hit
GTACACACCGCCCGTCGCTACTACTGATTGGATGTTCAAGCAAGAACTTT2390.1517373610396866No Hit
GGTACTGGTTGAACTGTTTATCCCCCATTGTCTAGTATCACAGCACACTC2310.14665828619316992No Hit
GGTACAGGTTGAACTGTTTATCCTCCATTGTCTAGTATCACAGCACACTC2300.14602340183735532No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGTGTTGGTGAGGAGCTC2230.14157921134665322No Hit
GTACACACCGCCCGTCGCACCAACCGATTGAATGGTTTGGTGAAATATTG2200.13967455827920944No Hit
GGAACTGGTTGAACTGTTTATCCTCCATTGTCTAGTATCACAGCACACTC2170.1377699052117657No Hit
GGTACTGGTTGAACAGTTTATCCCCCATTGTCTAGTATCACAGCACACTC2020.12824663987454687No Hit
GGTACTGGTTGAACTGTTTATCCTCCATTGTCTAGTATCACAGCACACTC2020.12824663987454687No Hit
GGTACAGGTTGAACAGTTTATCCTCCATTGTCTAGTATCACAGCACACTC2010.12761175551873224No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT2000.12697687116291767No Hit
GTACACACCGCCCGTCACACCATGGGAATTGAACTCATTCGAAGCGGGAA1990.1263419868071031No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGCTATTC1950.12380244938384473No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGATTAGTGAGGACATC1930.12253268067221555No Hit
GGTACTGGTTGAACAGTTTATCCTCCATTGTCTAGTATCACAGCACACTC1930.12253268067221555No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGTTTAGTGAGACCCTC1900.1206280276047718No Hit
GGTACAGGTTGAACTGTTTATCCCCCATTGTCTAGTATCACAGCACACTC1870.11872337453732802No Hit
GGTACTGGATGAACTGTTTATCCTCCATTGTCTAGTATCACAGCACACTC1870.11872337453732802No Hit
GGTACTGGTTGAACTGTTTACCCTCCATTGTCTAGTATCACAGCACACTC1860.11808849018151343No Hit
GGTACTGGATGAACTGTTTATCCCCCATTGTCTAGTATCACAGCACACTC1850.11745360582569886No Hit
GGAACAGGTTGAACTGTTTATCCTCCATTGTCTAGTATCACAGCACACTC1840.11681872146988427No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAAGCCTCG1820.11554895275825508No Hit
GGTACAGGATGAACTGTTTATCCTCCATTGTCTAGTATCACAGCACACTC1810.11491406840244049No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGTTTAGTGAGGCTCAC1790.11364429969081133No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT1780.11300941533499674No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGGCCCCC1750.11110476226755296No Hit
GGAACTGGTTGAACAGTTTATCCTCCATTGTCTAGTATCACAGCACACTC1730.1098349935559238No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCTTC1730.1098349935559238No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAGAATTTC1720.10920010920010921No Hit
GGTACTGGTTGAACTGTATATCCCCCATTGTCTAGTATCACAGCACACTC1700.10793034048848002No Hit
GGTACTGGTTGAACTGTATATCCTCCATTGTCTAGTATCACAGCACACTC1700.10793034048848002No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT1700.10793034048848002No Hit
GGTACAGGTTGAACTGTTTACCCTCCATTGTCTAGTATCACAGCACACTC1680.10666057177685084No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGTCTTC1680.10666057177685084No Hit
GGAACAGGTTGAACTGTTTATCCCCCATTGTCTAGTATCACAGCACACTC1640.10412103435359249No Hit
GGTACTGGTTGAACTGTTTACCCCCCATTGTCTAGTATCACAGCACACTC1630.1034861499977779No Hit
GGTACAGGTTGAACTGTTTACCCCCCATTGTCTAGTATCACAGCACACTC1630.1034861499977779No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAATCTTC1600.10158149693033415No Hit
GGAACTGGTTGAACTGTTTATCCCCCATTGTCTAGTATCACAGCACACTC1600.10158149693033415No Hit
GGAACTGGTTGAACAGTTTATCCCCCATTGTCTAGTATCACAGCACACTC1600.10158149693033415No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)