FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1v_S117_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1v_S117_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191758
Total Bases57.7 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC57

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG2946015.36311392484277No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC128956.724621658548796No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC69793.63948309848872No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT69663.6327037203141463No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT63723.322938286798986No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC59703.1132990540159993No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG34751.8121799351265657No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT32901.7157041687960866No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGACGTTTTAGTGAGACATTT32601.7000594499316846No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC29691.5483056769469852No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC27581.4382711542673576No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG14540.7582473742946839No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAGATCTCG14520.7572043930370571No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC11390.5939778262184628No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCTGGTGAACCTTCT10810.5637313697472857No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT9550.4980235505167972No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC9320.48602926605408897No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT9270.48342181291002206No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT8460.44118107197613654No Hit
GTACACACCGCCCGTCGCTAGTACCGATTTCGAGTGGTCCGGTGAACCTT8370.43648765631681596No Hit
GTACACACCGCCCGTCGCATCTACCGATTGAATGGCCCGGTGAAGACCTG7500.3911179716100502No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT7420.38694604657954296No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTC6690.3488772306761648No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT6490.3384474180998967No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC5970.31132990540159994No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC5470.2852553739609299No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG5080.2649172394372073No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT4960.2586593518914465No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAACCCT4420.2304988579355229No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT4140.21589712032874772No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTACTT3640.18982258888807768No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTCAGTGAGATAATC3370.17574234191011587No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGGCCCCC3250.16948445436435508No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGGTCCGGTGAACTGGTC3060.15957613241690047No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATGTTC3050.15905464178808706No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC3040.15853315115927366No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA2920.15227526361351285No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGGGTGGTCCGGTGAACCCT2880.15018930109825926No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGCTCAGGTGAGCCATTC2590.13506607286267067No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC2580.13454458223385724No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAGGCCTCG2550.13298011034741708No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGCTC2520.13141563846097687No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA2400.12515775091521605No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGCAATCCGGTGAATATTTC2200.11472793833894805No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTTG2000.10429812576268005No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGTTTAGTGAGGCTCAC1920.10012620073217285No Hit
GTACACACCGCCCGTCGCTACTTCCGATTTCGAGTGGTCCGGTGAGCCTT1920.10012620073217285No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)