FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1h_S94_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1h_S94_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73412
Total Bases22 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC57

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG66929.115675911295156No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC61588.38827439655642No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT28923.93941045060753No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC27713.774587260938266No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG20922.8496703536206613No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC20532.7965455238925516No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTC18932.578597504495178No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT14121.923391271181823No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGACCTCC13911.8947855936359177No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGTTTGGG13501.838936413665341No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC13191.7967089849070996No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC12191.660491472783741No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC12131.6523184220563398No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT11281.5365335367514847No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA10671.453440854356236No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC10071.371710347082221No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT9371.2763580885958699No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG8541.1632975535334822No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG8251.1237944750177082No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGATTTAGTGAGGATCTT6610.9003977551354002No Hit
GTACACACCGCCCGTCGCTAGTACCGATTTCGAGTGGTCCGGTGAACCTT4870.6633792840407562No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC4780.651119707949654No Hit
GTACACACCGCCCGTCGCACCTAGCGATTGAATGGTCCGGTGAGGCCTCG4690.6388601318585517No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC4590.6252383806462158No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAGATCTCG4190.5707513757968724No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTT4180.5693892006756389No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGATTTCC3980.5421456982509671No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT3430.46722606658311994No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT3240.44134473927968176No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC3060.41682558709747725No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT2530.3446303056720972No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT2340.31874897836865906No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT2090.28469460033781946No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC2090.28469460033781946No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGTTTAGTGAGGCTCAC1970.2683484988830164No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT1910.2601754481556149No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGCTTGGG1820.2479158720645126No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTGATGAATTGCGC1810.24655369694327905No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT1740.23701847109464394No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGGTCCGGTGAACTGGTC1630.22203454476107448No Hit
GTACACACCGCCCGTCGCACCTAGCGATTGAATGGTCCGGTGAAGCCTCG1610.21931019451860734No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGCTGGAC1540.20977496866997222No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGGTGTACCAGTGAGATCCTT1430.19479104233640276No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG1420.1934288672151692No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGTTCCTC1370.18661799160900125No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGATGGATGAGGCTGCGT1260.17163406527543182No Hit
GTACACACCGCCCGTCGCTACTAGCGATTGAATGGTTTAGTGAGATCCTC1250.17027189015419825No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTCCGGTGAGGCCTTG1210.16482318966926388No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGTTTAGTGAGATCCCC1100.14983926333569444No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTC1080.14711491309322725No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTT1000.1362175121233586No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATCATTCGGTGAGGATCTC920.1253201111534899No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGTTTAGTGAGGGCCTC840.1144227101836212No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGTGCTGGTGAAGACTTC820.11169835994115404No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT800.10897400969868687No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAACGTTCCGGTGAGACCTTT780.1062496594562197No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGCAATCCGGTGAATATTTC780.1062496594562197No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTCAGTGAGATAATC760.10352530921375251No Hit
GTACACACCGCCCGTCGCTACTACCGACTGCCAGGTTTTGTGAGCTATCT760.10352530921375251No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGATTCGGTGAAAATCTC750.10216313409251894No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)