FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1g_S93_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1g_S93_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207540
Total Bases62.4 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCTTC4506921.715813819022838No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTC4179520.138286595355112No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTC76333.677845234653561No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCTTC54942.6472005396550062No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTC52612.5349330249590443No Hit
TGATCCTTCTGCAGGTTCACCTACAGCAACCTTGTTACGACTTTTGCTTC26931.297581189168353No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCATC19360.9328322251132312No Hit
TGATCCTTCTGCAGGTTCACCTACGGAGACCTTGTTACGACTTCTCCTTC16300.7853907680447143No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTCCTTC9980.48087115736725455No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTC9530.4591885901512961No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8790.4235328129517202No Hit
TGATCCTTCTGCAGGTTCACCTACAGATACCTTGTTACGACTTAACCCTC6310.30403777585043845No Hit
TGATCCTTCTGCAGGTTCACCTACAGAAACCTTGTTACGACTTCACCTTC5620.270791172785969No Hit
TAGACTTCGGGGTGGCCGAAGAATCAGAAGAGGTGTTGGTATAAAATAGG5280.25440878866724487No Hit
TGATCCTTCTGCAGGTTCACCTACAGAAACCTTGTTACGACTTTTACTTC4810.2317625517972439No Hit
TAGACCTCGGGGTGGCCGAAGAATCAGAAGAGGTGTTGGTATAAAATAGG4480.21586200250554108No Hit
TAGACTTCGGGGTGGCCGAAAAATCAGAAGAGGTGTTGGTATAAAATAGG4000.19273393080851883No Hit
GGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3970.19128842632745494No Hit
TAGACTTCGGGGTGGCCAAAGAATCAGAAGAGGTGTTGGTATAAAATAGG3790.1826153994410716No Hit
TAGACCTCGGGGTGGCCGAAAAATCAGAAGAGGTGTTGGTATAAAATAGG3540.17056952876553919No Hit
TAGACTTCGGGATGGCCGAAGAATCAGAAGAGGTGTTGGTATAAAATAGG3460.1667148501493688No Hit
TGATCCTTCTTCAGGTTCACCTACAGCAACCTTGTTACGACTTTTGCTTC3430.1652693456683049No Hit
TGATCCTTCTGCAGGTTCACCTACGGTTACCTTGTTACGACTTCACCCCA3400.163823841187241No Hit
TAGACCTCGGGATGGCCGAAGAATCAGAAGAGGTGTTGGTATAAAATAGG3330.16045099739809193No Hit
TGATCCTTCTGCAGGTTCACCTACGAAAACCTTGTTACGACTTTTACTTC3240.15611448395490027No Hit
TGATCCTTCTGCAGGTTCACCTACGGCTACCTTGTTACGACTTCACCCCA3240.15611448395490027No Hit
TAGACCTCGGGGTGGCCAAAGAATCAGAAGAGGTGTTGGTATAAAATAGG3160.1522598053387299No Hit
TAGACTTCGGGGTGGCCGAAGAACCAGAAGAGGTGTTGGTATAAAATAGG3080.1484051267225595No Hit
TAGACTTCGGGATGGCCGAAAAATCAGAAGAGGTGTTGGTATAAAATAGG2820.13587742122000576No Hit
TAGACTTCGGGGTGGCCAAAAAATCAGAAGAGGTGTTGGTATAAAATAGG2780.1339500819119206No Hit
TAGACTTCGGGGTGGCCGAAGAATCAGAATAAGTGTTGGTATAGAATAGG2770.1334682470848993No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCATC2660.12816806398766503No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTGTCCTTC2650.12768622916064373No Hit
TAGACCTCGGGGTGGCCGAAGAATCAGAATAAGTGTTGGTATAGAATAGG2550.12286788089043077No Hit
TAGACTTCGGGATGGCCAAAGAATCAGAAGAGGTGTTGGTATAAAATAGG2530.12190421123638817No Hit
TAGACCTCGGGGTGGCCGAAGAACCAGAAGAGGTGTTGGTATAAAATAGG2460.11853136744723908No Hit
TAGACCTCGGGATGGCCGAAAAATCAGAAGAGGTGTTGGTATAAAATAGG2450.11804953262021778No Hit
TAGACCTCGGGATGGCCAAAGAATCAGAAGAGGTGTTGGTATAAAATAGG2360.11371301917702611No Hit
TAGACTTCGGGGTGGCCGAAAAATCAGAATAAGTGTTGGTATAGAATAGG2140.10311265298255758No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTGCTTC2100.1011853136744724No Hit
TAGACTTCGGGGTGGCCGAAAAACCAGAAGAGGTGTTGGTATAAAATAGG2080.1002216440204298No Hit
TAGACCTCGGGGTGGCCAAAAAATCAGAAGAGGTGTTGGTATAAAATAGG2080.1002216440204298No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)