FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1f_S92_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1f_S92_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295879
Total Bases89 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC60

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTC8343328.198351353086903No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCTTC5328518.009050997198177No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTC3467411.718979718060424No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTTTACTTC214287.2421496625309665No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCTTC136124.600529270411215No Hit
TGATCCTTCTGCAGGTTCACCTACGGAGACCTTGTTACGACTTCTCCTTC96023.24524552266298No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTC83412.8190577905157177No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTGTCCTTC53361.803439919696903No Hit
TGATCCTTCTGCAGGTTCACCTACAGCAACCTTGTTACGACTTTTGCTTC51231.7314510323476826No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCATC31301.0578648704369016No Hit
TGATCCTTCTGCAGGTTCACCTACGAAAACCTTGTTACGACTTTTACTTC24360.8233095285572818No Hit
TGATCCTTCTTCAGGTTCACCTACGGAGACCTTGTTACGACTTCTCCTTC24320.8219576245695032No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTCCTTC21110.7134673295502553No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTAGTTC19720.6664886659749425No Hit
TGATCCTTCTGCAGGTTCACCTACAGATACCTTGTTACGACTTAACCCTC18050.610046674485178No Hit
TGATCCTTCTGCAGGTTCACCTACAGAAACCTTGTTACGACTTTTACTTC16420.5549565869831925No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTGTCCTTC13130.4437624839883871No Hit
TGATCCTTCTTCAGGTTCACCTACAGCAACCTTGTTACGACTTTTGCTTC12780.43193332409532276No Hit
TGATCCTTCTGCAGGTTCACCTACAGAAACCTTGTTACGACTTCACCTTC10150.3430456368988674No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTCACCATC7870.2659871095954765No Hit
TGATCCTTCTGCAGGTTCACCTACAGAAACCTTGTTACGACTTCTCCTTC7080.23928700583684548No Hit
TGATCCTTCTTCAGGTTCACCTACGAAAACCTTGTTACGACTTTTACTTC5980.20210964617292881No Hit
TGATCCTTCTGCAGGTTCACCTACAGAAGCCTTGTTACGACTTCTCCTTC5950.2010957181820947No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTTTCCTTC5210.17608549440818713No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTGCTTC5120.17304371043568484No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTATTCC5030.1700019264631826No Hit
TGATCCTTCTTCAGGTTCACCTACGGAAACCTTGTTACGACTTTTAGTTC4440.15006134264344545No Hit
TGATCCTTCTGCAGGTTCACCTACTGCTACCTTGTTACGACTTTTGCTTC3790.12809290284204017No Hit
TGATCCTTCTGCAGGTTCACCTACGGATACCTTGTTACGACTTTTACGTC3750.12674099885426138No Hit
TGATCCTTCTGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTGCTTC3670.1240371908787038No Hit
TGATCCTTCTTCAGGTTCACCTACAGAAACCTTGTTACGACTTTTACTTC3600.12167135890009091No Hit
TGATCCTTCTTCAGGTTCACCTACAGATACCTTGTTACGACTTAACCCTC3430.11592576695203106No Hit
TGATCCTTCTGCAGGTTCACCTACGGAGACCTTGTTACGACTTTTACTTC3420.11558779095508637No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3410.11524981495814168No Hit
TGATCCTTCTGCAGGTTCACCTACGGCTACCTTGTTACGACTTCACCCCA2960.1000408950956303No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)