FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1ee_S142_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1ee_S142_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222756
Total Bases67 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC67

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACTGATTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT45912.0609994792508397No Hit
GGTACTGATTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT39371.7674046939251917No Hit
GGTACTGATTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT33571.507030113666972No Hit
GGTACTGATTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT32941.4787480471906482No Hit
GGTACTGATTTTTCGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT26551.191887087216506No Hit
GGTACTGGTTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT25701.1537287435579737No Hit
GGTACTGATTCTTTGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT24811.11377471313904No Hit
GGTACTGATTCTTCGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT23381.0495789114546858No Hit
GGTACTGGTTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT22451.0078291942753508No Hit
GGTACTGATTCTTCGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT21820.9795471277990268No Hit
GGTACTGATTTTTTGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT21720.975057910898023No Hit
GGTACTGGTTTTTCGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT19140.8592361148521253No Hit
GGTACTGATTTTTCGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT17860.8017741385192767No Hit
GGTACTGGTTCTTTGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT17790.7986316866885741No Hit
GGTACTGATTCTTTGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT17280.7757366804934547No Hit
GGTACTGATTTTTTGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT16510.7411697103557255No Hit
GGTACTGATTTTTCGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT14960.6715868483901668No Hit
GGTACTGGTTCTTCGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT14510.6513853723356497No Hit
GGTACTGGTTTTTCGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT14050.6307349745910323No Hit
GGTACTGGTTCTTTGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT14040.630286052900932No Hit
GGTACTGATTCTTTGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT13690.6145737937474187No Hit
GGTACTGGTTCTTCGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT11850.5319722027689491No Hit
GGTACTGATTTTTTGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT11310.5077304315035286No Hit
GGTACTGGTTTTTTGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT10940.4911203289698145No Hit
GGTACTGGTTTTTCGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT10350.4646339492538921No Hit
GGTACTGATTTTTTGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT9310.4179460934834528No Hit
GGTACTGGTTCTTTGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT9170.41166118982204747No Hit
GGTACTGGTTTTTCGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT8460.37978774982492053No Hit
GGTACTGGTTTTTTGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT7900.35464813517929933No Hit
GGTACTGGTTCTTTGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT7740.3474653881376933No Hit
GGTACTGGTTTTTTGGCCATCCCGAAGTCTACTGTCTCTTATACACATCT5780.259476736878019No Hit
GGTACTGGTTTTTTGGCCATCCCGAGGTCTACTGTCTCTTATACACATCT4760.21368672448778037No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)