FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1e_S91_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1e_S91_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30883
Total Bases9.2 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC58

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG346711.22624097399864No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC19006.152252048052326No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC18836.097205582359226No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC13714.43933555677881No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA6652.1532882168183143No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT6502.104717805912638No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC6252.0237671210698442No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG4761.5413010394067934No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC3971.2854968753035652No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGTTTGGG3651.181879998704789No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC3471.1235955056179776No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT2200.7123660266165852No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG1520.4921801638441861No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC1490.4824660816630509No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAGATCTCG1370.4436097529385098No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT1090.35294498591458084No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGTTTAGTGAGGCTCAC1070.3464689311271573No Hit
GTACACACCGCCCGTCGCTACTACCGATGGATGATTTGGTGAGGTCGCCT960.3108506297963281No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC950.30761260240261634No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTCCGGTGAGGCCTTG950.30761260240261634No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT860.27847035585921054No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT830.2687562736780753No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTC770.24932810931580482No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT700.22666191755982257No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT640.20723375319755205No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT600.19428164362270506No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG600.19428164362270506No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT590.1910436162289933No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGGGTGGTCCGGTGAACCCT550.1780915066541463No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAACCCT540.17485347926043454No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGTTTAGTGAGATCCCC510.1651393970792993No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC510.1651393970792993No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAGGCCTCG470.1521872875044523No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGCATTT440.14247320532331703No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTT440.14247320532331703No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT430.13923517792960527No Hit
GGAACTGATTCTTCGGCCACCCCGAGGTCTACTGTCTCTTATACACATCT410.13275912314218177No Hit
GGAACTGATTCTTCGGCCACCCCGAAGTCTACTGTCTCTTATACACATCT410.13275912314218177No Hit
GTACACACCGCCCGTCGTTGCTACCGATTGGCTGTGGGATAGAGCTTGGG410.13275912314218177No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA410.13275912314218177No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT400.12952109574847No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGTCTTC390.12628306835475828No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGTTCCTC370.11980701356733478No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGGCCCCC350.11333095877991128No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCTTC350.11333095877991128No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGACCCTC340.11009293138619952No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAAACTTC340.11009293138619952No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTCCGGTGAACTTTTT320.10361687659877603No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATAGTTTAGTGAGGCACTT320.10361687659877603No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)