FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1d_S86_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1d_S86_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175992
Total Bases52.9 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC52

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG1856610.549343151961454No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC173719.870335015227964No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTC96055.457634437928997No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG70293.9939315423428337No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT58333.3143551979635437No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC51572.9302468294013364No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC39102.22169189508614No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG30961.7591708714032457No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC21941.2466475748897679No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC18431.047206691213237No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT14300.8125369334969771No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT13370.7596936224373835No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGTCATAGTGAGGTCCTC10310.5858220828219465No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTCTCGGTGAAGACTTG9820.5579799081776444No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTTCGGTGAACTTTTT8720.4954770671394155No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGTGTTGGTGAGGAGCTC8540.485249329514978No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT8420.478430837765353No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT7830.4449065866630302No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC7140.40570025910268653No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT6880.3909268603118324No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC6710.381267330333197No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT6650.3778580844583845No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATGTTC6380.36251647802172826No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAAGCCTCG6180.3511523251056866No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT5970.3392199645438429No Hit
GTACACACCGCCCGTCGCTAGTACCGATTTCGAGTGGTCCGGTGAACCTT5960.33865175689804083No Hit
GTACACACCGCCCGTCGCATCTACCGATTGAATGGCCCGGTGAAGACCTG5820.3306968498568117No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT5810.3301286422110096No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTC5440.30910495931633253No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC5390.30626392108732214No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGTTTAGTGAGACCCTC4840.27501250056820764No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGCTCAGGTGAGCCATTC4740.2693304241101868No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC4510.25626164825673897No Hit
GTACACACCGCCCGTCGCTACGACCGATTGTTCCAGTTAATGAGCGATAT4510.25626164825673897No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG4460.25342061002772853No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTC4300.24432928769489523No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGTTTAGTGAGGGCCTC3940.22387381244602025No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAGATCTCG3240.18409927723987454No Hit
GTACACACCGCCCGTCGCTCCTACTGATTGAGTGAACTGGTGAAATCCTT2950.16762125551161416No Hit
GTACACACCGCCCGTCGCTCCTACCGATTCAATGAATCGATGAACTGGAT2900.16478021728260375No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT2730.15512068730396836No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGTTTAGTGAGGCTCAC2730.15512068730396836No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTTGGTGGGTGAGGCTACCT2700.1534160643665621No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT2480.14091549615891633No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAACCCT2440.13864266557570798No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAACTC2330.1323923814718851No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTCAGTGAGATAATC2190.12443747443065595No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA2160.1227328514932497No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTTG2160.1227328514932497No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG2090.11875539797263511No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAGGCCTCG1950.11080049093140597No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGCTC1940.11023228328560389No Hit
GGTACTGGTTGAACTGTTTATCCTCCATTATCTAGTGGTAATTCTCATTC1800.10227737624437475No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)