FastQCFastQC Report
Fri 18 Apr 2025
Yell_July18_Site1cc_S140_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameYell_July18_Site1cc_S140_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences356703
Total Bases107.3 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC55

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGCCTCG5056814.176499777125509No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGCCTCG150314.213869802048203No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATAATTC140473.938010053181498No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAATCTT109513.0700610872350387No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGATTCGGTGAAAATCTC102712.879426301432845No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACATTTTAGTGAGGTCCTC96632.7089763753038243No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGATCCTC88782.4889053358115856No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTT75932.1286616597000867No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAATTTGAT71111.9935352379991198No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTC52851.481624769065581No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGATCCTC51111.4328446915220787No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGTGGGTGGGTGAGGCTACCT50791.423873642778446No Hit
GTACACACCGCCCGTCAAACCATCTTAGTTGGGGGTGGGTGAGGCTGCGC48241.3523855981026232No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAGGACTCG45491.27529064796203No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGACGTTTTAGTGAGACATTT43961.2323978211565363No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATCTTC38291.0734420512302951No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTC35871.0055984951065733No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGTTGAATCTT31850.8928996952646879No Hit
GTACACACCGCCCGTCACTCCTACCGATTTCGAGTGGTCCGGTGAATCTT30270.8486051420930018No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAGCCTT25630.7185249353103282No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTC21050.5901268001670859No Hit
GTACACACCGCCCGTCGCTAGTACCGATTTCGAGTGGTCCGGTGAACCTT20140.5646153803023803No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGATGAATATCGT18670.5234046251363178No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAGACTCG18370.5149942669391623No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGCTCAGGTGAGCCATTC13690.38379267906353465No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGCTC13290.3725788681339938No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAACCCT12990.3641685099368382No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGTGGATTAGTGAGATCCCC12430.34846917463548105No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAATCTT12360.3465067577228114No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGACTTC11830.3316484582411698No Hit
GTACACACCGCCCGTCGCATCTACCGATTGAATGGCCCGGTGAAGACCTG11610.32548086222992234No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATTTACTAGTGAGACAATA10560.29604460853987774No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGGCCCCC10170.2851111428835754No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAACTTTTT10030.28118630905823616No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGCAATCCGGTGAATATTTC9990.28006492796528204No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGTTTCGGTGAAGATTCC9960.2792238921455665No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCTCT9460.26520662848364046No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAATGTTC8990.25203040064142995No Hit
GTACACACCGCCCGTCGCTACTACCGATTTCGAGTGGTCCGGTGAAGCTT8110.22736001659644017No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAGCTATTC7780.21810862257956898No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTGAGTGGTCCGGTGAATCTTT7400.20745550219650521No Hit
GTACACACCGCCCGTCGCTACTACCGATCAGATGATTTAGTGAGGCCCTC7280.20409135891764296No Hit
GTACACACCGCCCGTCGCTACTTCCGATTTCGAGTGGTCCGGTGAGCCTT7020.19680238181344145No Hit
GTACACACCGCCCGTCGCACCAACTGATTGGATGACTCGGTGAAAAATTG6700.1878313330698088No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAATAATTT6660.1867099519768547No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAAACTTC6320.177178212686745No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTTCGGTGAACTTTTT5840.163721639571296No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGGTCCGGTGAGGCCTTG5790.16231991320510342No Hit
GTACACACCGCCCGTCGCTCCTACCGATTTCGAGTGGTCCGGTGAAGCTT5750.16119853211214932No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGCGTTT5640.1581147341065256No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGGTCCGGTGAACTGGTC5600.1569933530135715No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGTGAGCTCGAG5570.15615231719385594No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTCAGTGAGATAATC5260.1474616137234618No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAATGGTCCGGTGAAATCTTC5250.1471812684502233No Hit
GTACACACCGCCCGTCGCACCTACCGATTGGATGGTCCGGTGAGAATTTC4870.13652814806715952No Hit
GTACACACCGCCCGTCTCACCTACCGATTGAATGGTCCGGTGAGGCCTCG4850.13596745752068248No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGATCCGGTGAATTGTTC4820.13512642170096692No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAACGTGCTGGTGAAGCGTTA4800.13456573115448986No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGACCCTC4770.1337246953347743No Hit
GTACACACCGCCCGTCGCTGCTACCGATTGAGTGATCCGGTGAGTAATTC4740.13288365951505873No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGCTTAGTGAGTTTCGA4710.1320426236953432No Hit
GTACACACCGCCCGTCGCACCTACCGATTGAGTGGTCCGGTGAGATCTCG4450.12475364659114165No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAGCATTAGGGTGAAATCTTC4430.1241929560446646No Hit
GTACACACCGCCCGTCGCTACTACCGATTGAACGGTTTAGTGAGTTTCGA4330.1213895033122794No Hit
GTACACACCGCCCGTCGCTCCTACCGATTCAATGAATCGATGAACTGGAT4230.1185860505798942No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAATGTGTTGGTGAGGAGCTC4110.11522190730103195No Hit
GTACACACCGCCCGTCGCTCCTACCGATCGAGTGTTTAGGTGAAATTGAT4110.11522190730103195No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGAGTGTTCCGGTGAATAATTC4000.11213810929540823No Hit
GTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGACCCAC3890.10905431128978449No Hit
GTACACACCGCCCGTCGCTCCTACCGATTGGATGATCCGGTGAGCTATTC3790.1062508585573993No Hit
GTACACACCGCCCGTCGTTTCTTCCGACTGATACTCATTGTGAGTTGCAA3780.10597051328416077No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)