A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2024-06-10, 16:10 PDT based on data in:
/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_100.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_107.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_108.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_109.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_10.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_110.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_117.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_118.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_119.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_11.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_120.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_121.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_127.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_128.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_129.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_12.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_131.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_137.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_138.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_139.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_13.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_140.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_147.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_148.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_149.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_150.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_18.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_19-G.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_19.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_19-S.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_1.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_20-G.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_20.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_20-S.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_21.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_28.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_29.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_2.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_30.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_31.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_37.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_38.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_39.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_3.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_40.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_41.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_47.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_48.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_49.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_4.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_50.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_57-G.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_57.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_57-S.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_58-G.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_58.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_58-S.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_59.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_5.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_60.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_67.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_68.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_69.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_70.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_78.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_79.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_80.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_83.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_88.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_90.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_91.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_92.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_97.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_98.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_99.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-116.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-156.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-36.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-76.log/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-94.log
General Statistics
Showing 80/80 rows and 3/3 columns.| Sample Name | Frag Length | % Aligned | M Aligned |
|---|---|---|---|
| 1.flexbar_trim.R_1 | 228.5bp | 77.5% | 15.3 |
| 10.flexbar_trim.R_1 | 215.5bp | 73.7% | 13.6 |
| 100.flexbar_trim.R_1 | 230.2bp | 80.0% | 13.4 |
| 107.flexbar_trim.R_1 | 236.8bp | 79.8% | 12.7 |
| 108.flexbar_trim.R_1 | 202.4bp | 69.3% | 14.6 |
| 109.flexbar_trim.R_1 | 235.2bp | 78.8% | 16.3 |
| 11.flexbar_trim.R_1 | 231.4bp | 79.5% | 16.0 |
| 110.flexbar_trim.R_1 | 239.6bp | 82.3% | 16.3 |
| 117.flexbar_trim.R_1 | 216.8bp | 78.6% | 16.3 |
| 118.flexbar_trim.R_1 | 240.4bp | 81.8% | 16.1 |
| 119.flexbar_trim.R_1 | 241.8bp | 84.6% | 17.6 |
| 12.flexbar_trim.R_1 | 215.5bp | 76.0% | 14.6 |
| 120.flexbar_trim.R_1 | 232.7bp | 79.4% | 15.3 |
| 121.flexbar_trim.R_1 | 235.2bp | 73.1% | 14.6 |
| 127.flexbar_trim.R_1 | 234.3bp | 78.0% | 17.0 |
| 128.flexbar_trim.R_1 | 272.1bp | 75.2% | 7.0 |
| 129.flexbar_trim.R_1 | 223.3bp | 37.9% | 3.3 |
| 13.flexbar_trim.R_1 | 229.4bp | 71.3% | 12.3 |
| 131.flexbar_trim.R_1 | 248.8bp | 73.3% | 6.2 |
| 137.flexbar_trim.R_1 | 261.5bp | 76.7% | 5.9 |
| 138.flexbar_trim.R_1 | 272.4bp | 78.6% | 6.2 |
| 139.flexbar_trim.R_1 | 267.8bp | 79.2% | 7.1 |
| 140.flexbar_trim.R_1 | 279.1bp | 77.3% | 6.8 |
| 147.flexbar_trim.R_1 | 243.7bp | 75.8% | 6.2 |
| 148.flexbar_trim.R_1 | 190.2bp | 71.8% | 16.6 |
| 149.flexbar_trim.R_1 | 204.3bp | 58.7% | 52.8 |
| 150.flexbar_trim.R_1 | 191.2bp | 70.2% | 17.9 |
| 18.flexbar_trim.R_1 | 226.6bp | 73.4% | 12.2 |
| 19-G.flexbar_trim.R_1 | 226.0bp | 71.6% | 15.2 |
| 19-S.flexbar_trim.R_1 | 231.5bp | 77.2% | 17.3 |
| 19.flexbar_trim.R_1 | 233.8bp | 77.5% | 12.9 |
| 2.flexbar_trim.R_1 | 235.8bp | 82.1% | 15.0 |
| 20-G.flexbar_trim.R_1 | 231.8bp | 72.2% | 16.1 |
| 20-S.flexbar_trim.R_1 | 237.6bp | 74.9% | 11.5 |
| 20.flexbar_trim.R_1 | 223.8bp | 71.9% | 11.5 |
| 21.flexbar_trim.R_1 | 232.3bp | 74.1% | 12.0 |
| 28.flexbar_trim.R_1 | 229.5bp | 77.1% | 13.6 |
| 29.flexbar_trim.R_1 | 227.6bp | 70.1% | 12.3 |
| 3.flexbar_trim.R_1 | 213.6bp | 74.0% | 14.2 |
| 30.flexbar_trim.R_1 | 233.7bp | 75.9% | 14.0 |
| 31.flexbar_trim.R_1 | 265.4bp | 80.6% | 14.3 |
| 37.flexbar_trim.R_1 | 205.6bp | 78.6% | 12.0 |
| 38.flexbar_trim.R_1 | 196.1bp | 73.0% | 12.4 |
| 39.flexbar_trim.R_1 | 208.2bp | 76.1% | 12.8 |
| 4.flexbar_trim.R_1 | 270.0bp | 75.7% | 14.7 |
| 40.flexbar_trim.R_1 | 193.7bp | 70.8% | 11.0 |
| 41.flexbar_trim.R_1 | 195.4bp | 64.4% | 9.8 |
| 47.flexbar_trim.R_1 | 210.6bp | 76.8% | 13.3 |
| 48.flexbar_trim.R_1 | 208.2bp | 76.5% | 14.4 |
| 49.flexbar_trim.R_1 | 214.1bp | 73.5% | 13.8 |
| 5.flexbar_trim.R_1 | 225.1bp | 76.1% | 14.1 |
| 50.flexbar_trim.R_1 | 230.5bp | 75.2% | 13.3 |
| 57-G.flexbar_trim.R_1 | 228.5bp | 76.7% | 20.5 |
| 57-S.flexbar_trim.R_1 | 171.1bp | 40.2% | 4.9 |
| 57.flexbar_trim.R_1 | 213.9bp | 79.6% | 14.6 |
| 58-G.flexbar_trim.R_1 | 229.0bp | 75.5% | 20.6 |
| 58-S.flexbar_trim.R_1 | 183.1bp | 69.1% | 10.1 |
| 58.flexbar_trim.R_1 | 211.1bp | 66.3% | 12.1 |
| 59.flexbar_trim.R_1 | 270.5bp | 79.4% | 13.9 |
| 60.flexbar_trim.R_1 | 220.3bp | 73.8% | 14.1 |
| 67.flexbar_trim.R_1 | 235.7bp | 76.1% | 14.6 |
| 68.flexbar_trim.R_1 | 220.0bp | 73.5% | 14.0 |
| 69.flexbar_trim.R_1 | 216.4bp | 75.0% | 12.3 |
| 70.flexbar_trim.R_1 | 205.2bp | 74.3% | 10.6 |
| 78.flexbar_trim.R_1 | 193.4bp | 77.0% | 13.1 |
| 79.flexbar_trim.R_1 | 224.8bp | 79.8% | 14.1 |
| 80.flexbar_trim.R_1 | 211.2bp | 74.9% | 10.3 |
| 83.flexbar_trim.R_1 | 217.9bp | 79.8% | 12.3 |
| 88.flexbar_trim.R_1 | 198.9bp | 63.9% | 12.0 |
| 90.flexbar_trim.R_1 | 203.2bp | 71.6% | 12.2 |
| 91.flexbar_trim.R_1 | 228.1bp | 76.0% | 14.3 |
| 92.flexbar_trim.R_1 | 243.3bp | 75.2% | 10.5 |
| 97.flexbar_trim.R_1 | 197.8bp | 78.8% | 13.3 |
| 98.flexbar_trim.R_1 | 213.8bp | 70.1% | 14.5 |
| 99.flexbar_trim.R_1 | 217.7bp | 72.5% | 11.3 |
| RESUB-116.flexbar_trim.R_1 | 234.7bp | 78.7% | 11.7 |
| RESUB-156.flexbar_trim.R_1 | 233.2bp | 81.3% | 12.4 |
| RESUB-36.flexbar_trim.R_1 | 232.6bp | 82.9% | 11.6 |
| RESUB-76.flexbar_trim.R_1 | 206.4bp | 76.1% | 10.5 |
| RESUB-94.flexbar_trim.R_1 | 234.1bp | 79.8% | 12.5 |
Kallisto
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data.DOI: 10.1038/nbt.3519.
