FastQCFastQC Report
Thu 6 Jun 2024
108_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename108_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22634852
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4713612.0824567353035928No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA404370.17864927943862854No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT307950.1360512540572388No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)