/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10408_sorted_dedup_clipped.bam ABLG10408 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10411_sorted_dedup_clipped.bam ABLG10411 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10412_sorted_dedup_clipped.bam ABLG10412 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10414_sorted_dedup_clipped.bam ABLG10414 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10415_sorted_dedup_clipped.bam ABLG10415 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10416_sorted_dedup_clipped.bam ABLG10416 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10417_sorted_dedup_clipped.bam ABLG10417 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10418_sorted_dedup_clipped.bam ABLG10418 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10419_sorted_dedup_clipped.bam ABLG10419 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10420_sorted_dedup_clipped.bam ABLG10420 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10423_sorted_dedup_clipped.bam ABLG10423 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10425_sorted_dedup_clipped.bam ABLG10425 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10426_sorted_dedup_clipped.bam ABLG10426 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10427_sorted_dedup_clipped.bam ABLG10427 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10428_sorted_dedup_clipped.bam ABLG10428 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10429_sorted_dedup_clipped.bam ABLG10429 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10433_sorted_dedup_clipped.bam ABLG10433 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10437_sorted_dedup_clipped.bam ABLG10437 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10438_sorted_dedup_clipped.bam ABLG10438 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10439_sorted_dedup_clipped.bam ABLG10439 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10441_sorted_dedup_clipped.bam ABLG10441 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10442_sorted_dedup_clipped.bam ABLG10442 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10444_sorted_dedup_clipped.bam ABLG10444 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10446_sorted_dedup_clipped.bam ABLG10446 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10447_sorted_dedup_clipped.bam ABLG10447 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10449_sorted_dedup_clipped.bam ABLG10449 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10450_sorted_dedup_clipped.bam ABLG10450 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10451_sorted_dedup_clipped.bam ABLG10451 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10452_sorted_dedup_clipped.bam ABLG10452 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10454_sorted_dedup_clipped.bam ABLG10454 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10455_sorted_dedup_clipped.bam ABLG10455 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10458_sorted_dedup_clipped.bam ABLG10458 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10459_sorted_dedup_clipped.bam ABLG10459 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10460_sorted_dedup_clipped.bam ABLG10460 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10461_sorted_dedup_clipped.bam ABLG10461 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10462_sorted_dedup_clipped.bam ABLG10462 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10463_sorted_dedup_clipped.bam ABLG10463 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10465_sorted_dedup_clipped.bam ABLG10465 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10467_sorted_dedup_clipped.bam ABLG10467 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10468_sorted_dedup_clipped.bam ABLG10468 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10469_sorted_dedup_clipped.bam ABLG10469 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10470_sorted_dedup_clipped.bam ABLG10470 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10471_sorted_dedup_clipped.bam ABLG10471 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10473_sorted_dedup_clipped.bam ABLG10473 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10475_sorted_dedup_clipped.bam ABLG10475 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10479_sorted_dedup_clipped.bam ABLG10479 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10481_sorted_dedup_clipped.bam ABLG10481 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10482_sorted_dedup_clipped.bam ABLG10482 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10483_sorted_dedup_clipped.bam ABLG10483 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10486_sorted_dedup_clipped.bam ABLG10486 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10487_sorted_dedup_clipped.bam ABLG10487 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10488_sorted_dedup_clipped.bam ABLG10488 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10718_sorted_dedup_clipped.bam ABLG10718 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10720_sorted_dedup_clipped.bam ABLG10720 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10725_sorted_dedup_clipped.bam ABLG10725 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10728_sorted_dedup_clipped.bam ABLG10728 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10738_sorted_dedup_clipped.bam ABLG10738 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10739_sorted_dedup_clipped.bam ABLG10739 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10742_sorted_dedup_clipped.bam ABLG10742 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10744_sorted_dedup_clipped.bam ABLG10744 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10746_sorted_dedup_clipped.bam ABLG10746 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10749_sorted_dedup_clipped.bam ABLG10749 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10755_sorted_dedup_clipped.bam ABLG10755 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10757_sorted_dedup_clipped.bam ABLG10757 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10759_sorted_dedup_clipped.bam ABLG10759 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10763_sorted_dedup_clipped.bam ABLG10763 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10764_sorted_dedup_clipped.bam ABLG10764 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10824_sorted_dedup_clipped.bam ABLG10824 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10827_sorted_dedup_clipped.bam ABLG10827 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10828_sorted_dedup_clipped.bam ABLG10828 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10834_sorted_dedup_clipped.bam ABLG10834 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10839_sorted_dedup_clipped.bam ABLG10839 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10844_sorted_dedup_clipped.bam ABLG10844 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10846_sorted_dedup_clipped.bam ABLG10846 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10847_sorted_dedup_clipped.bam ABLG10847 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10849_sorted_dedup_clipped.bam ABLG10849 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10850_sorted_dedup_clipped.bam ABLG10850 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10853_sorted_dedup_clipped.bam ABLG10853 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10854_sorted_dedup_clipped.bam ABLG10854 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10856_sorted_dedup_clipped.bam ABLG10856 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10857_sorted_dedup_clipped.bam ABLG10857 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10859_sorted_dedup_clipped.bam ABLG10859 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10860_sorted_dedup_clipped.bam ABLG10860 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10861_sorted_dedup_clipped.bam ABLG10861 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10863_sorted_dedup_clipped.bam ABLG10863 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10867_sorted_dedup_clipped.bam ABLG10867 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10868_sorted_dedup_clipped.bam ABLG10868 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1931_sorted_dedup_clipped.bam ABLG1931 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1932_sorted_dedup_clipped.bam ABLG1932 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1936_sorted_dedup_clipped.bam ABLG1936 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1950_sorted_dedup_clipped.bam ABLG1950 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1953_sorted_dedup_clipped.bam ABLG1953 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1957_sorted_dedup_clipped.bam ABLG1957 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1958_sorted_dedup_clipped.bam ABLG1958 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1961_sorted_dedup_clipped.bam ABLG1961 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1968_sorted_dedup_clipped.bam ABLG1968 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1975_sorted_dedup_clipped.bam ABLG1975 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1976_sorted_dedup_clipped.bam ABLG1976 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19808_sorted_dedup_clipped.bam ABLG19808 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19810_sorted_dedup_clipped.bam ABLG19810 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1981_sorted_dedup_clipped.bam ABLG1981 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19811_sorted_dedup_clipped.bam ABLG19811 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19817_sorted_dedup_clipped.bam ABLG19817 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19819_sorted_dedup_clipped.bam ABLG19819 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19820_sorted_dedup_clipped.bam ABLG19820 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19822_sorted_dedup_clipped.bam ABLG19822 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19823_sorted_dedup_clipped.bam ABLG19823 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19826_sorted_dedup_clipped.bam ABLG19826 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19827_sorted_dedup_clipped.bam ABLG19827 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19828_sorted_dedup_clipped.bam ABLG19828 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19830_sorted_dedup_clipped.bam ABLG19830 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19833_sorted_dedup_clipped.bam ABLG19833 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19834_sorted_dedup_clipped.bam ABLG19834 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19835_sorted_dedup_clipped.bam ABLG19835 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19839_sorted_dedup_clipped.bam ABLG19839 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19841_sorted_dedup_clipped.bam ABLG19841 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19842_sorted_dedup_clipped.bam ABLG19842 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19843_sorted_dedup_clipped.bam ABLG19843 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19850_sorted_dedup_clipped.bam ABLG19850 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19851_sorted_dedup_clipped.bam ABLG19851 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19852_sorted_dedup_clipped.bam ABLG19852 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19856_sorted_dedup_clipped.bam ABLG19856 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19857_sorted_dedup_clipped.bam ABLG19857 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19861_sorted_dedup_clipped.bam ABLG19861 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19862_sorted_dedup_clipped.bam ABLG19862 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19865_sorted_dedup_clipped.bam ABLG19865 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19867_sorted_dedup_clipped.bam ABLG19867 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1987_sorted_dedup_clipped.bam ABLG1987 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1988_sorted_dedup_clipped.bam ABLG1988 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1990_sorted_dedup_clipped.bam ABLG1990 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1991_sorted_dedup_clipped.bam ABLG1991 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1992_sorted_dedup_clipped.bam ABLG1992 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1994_sorted_dedup_clipped.bam ABLG1994 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1997_sorted_dedup_clipped.bam ABLG1997 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1999_sorted_dedup_clipped.bam ABLG1999 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2004_sorted_dedup_clipped.bam ABLG2004 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2009_sorted_dedup_clipped.bam ABLG2009 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2010_sorted_dedup_clipped.bam ABLG2010 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2012_sorted_dedup_clipped.bam ABLG2012 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2017_sorted_dedup_clipped.bam ABLG2017 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2020_sorted_dedup_clipped.bam ABLG2020 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2032_sorted_dedup_clipped.bam ABLG2032 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2037_sorted_dedup_clipped.bam ABLG2037 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2042_sorted_dedup_clipped.bam ABLG2042 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2054_sorted_dedup_clipped.bam ABLG2054 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2060_sorted_dedup_clipped.bam ABLG2060 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2063_sorted_dedup_clipped.bam ABLG2063 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2065_sorted_dedup_clipped.bam ABLG2065 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2071_sorted_dedup_clipped.bam ABLG2071 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2077_sorted_dedup_clipped.bam ABLG2077 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2082_sorted_dedup_clipped.bam ABLG2082 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2086_sorted_dedup_clipped.bam ABLG2086 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2087_sorted_dedup_clipped.bam ABLG2087 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2090_sorted_dedup_clipped.bam ABLG2090 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2092_sorted_dedup_clipped.bam ABLG2092 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2093_sorted_dedup_clipped.bam ABLG2093 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2094_sorted_dedup_clipped.bam ABLG2094 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2095_sorted_dedup_clipped.bam ABLG2095 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2096_sorted_dedup_clipped.bam ABLG2096 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2097_sorted_dedup_clipped.bam ABLG2097 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2098_sorted_dedup_clipped.bam ABLG2098 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2099_sorted_dedup_clipped.bam ABLG2099 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2101_sorted_dedup_clipped.bam ABLG2101 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2103_sorted_dedup_clipped.bam ABLG2103 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2104_sorted_dedup_clipped.bam ABLG2104 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2105_sorted_dedup_clipped.bam ABLG2105 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2108_sorted_dedup_clipped.bam ABLG2108 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2109_sorted_dedup_clipped.bam ABLG2109 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2110_sorted_dedup_clipped.bam ABLG2110 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2111_sorted_dedup_clipped.bam ABLG2111 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2113_sorted_dedup_clipped.bam ABLG2113 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2114_sorted_dedup_clipped.bam ABLG2114 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2115_sorted_dedup_clipped.bam ABLG2115 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2116_sorted_dedup_clipped.bam ABLG2116 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2117_sorted_dedup_clipped.bam ABLG2117 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2118_sorted_dedup_clipped.bam ABLG2118 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2120_sorted_dedup_clipped.bam ABLG2120 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2121_sorted_dedup_clipped.bam ABLG2121 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2123_sorted_dedup_clipped.bam ABLG2123 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2124_sorted_dedup_clipped.bam ABLG2124 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2126_sorted_dedup_clipped.bam ABLG2126 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2132_sorted_dedup_clipped.bam ABLG2132 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2133_sorted_dedup_clipped.bam ABLG2133 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2134_sorted_dedup_clipped.bam ABLG2134 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2137_sorted_dedup_clipped.bam ABLG2137 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2138_sorted_dedup_clipped.bam ABLG2138 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2140_sorted_dedup_clipped.bam ABLG2140 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2142_sorted_dedup_clipped.bam ABLG2142 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2143_sorted_dedup_clipped.bam ABLG2143 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2144_sorted_dedup_clipped.bam ABLG2144 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2146_sorted_dedup_clipped.bam ABLG2146 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2147_sorted_dedup_clipped.bam ABLG2147 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2151_sorted_dedup_clipped.bam ABLG2151 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2153_sorted_dedup_clipped.bam ABLG2153 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2154_sorted_dedup_clipped.bam ABLG2154 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2156_sorted_dedup_clipped.bam ABLG2156 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2157_sorted_dedup_clipped.bam ABLG2157 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2158_sorted_dedup_clipped.bam ABLG2158 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2159_sorted_dedup_clipped.bam ABLG2159 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2160_sorted_dedup_clipped.bam ABLG2160 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2162_sorted_dedup_clipped.bam ABLG2162 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2163_sorted_dedup_clipped.bam ABLG2163 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2166_sorted_dedup_clipped.bam ABLG2166 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2167_sorted_dedup_clipped.bam ABLG2167 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2168_sorted_dedup_clipped.bam ABLG2168 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2170_sorted_dedup_clipped.bam ABLG2170 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2171_sorted_dedup_clipped.bam ABLG2171 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2172_sorted_dedup_clipped.bam ABLG2172 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2174_sorted_dedup_clipped.bam ABLG2174 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2176_sorted_dedup_clipped.bam ABLG2176 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2177_sorted_dedup_clipped.bam ABLG2177 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2179_sorted_dedup_clipped.bam ABLG2179 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2182_sorted_dedup_clipped.bam ABLG2182 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2184_sorted_dedup_clipped.bam ABLG2184 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2185_sorted_dedup_clipped.bam ABLG2185 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2186_sorted_dedup_clipped.bam ABLG2186 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2188_sorted_dedup_clipped.bam ABLG2188 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2189_sorted_dedup_clipped.bam ABLG2189 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2193_sorted_dedup_clipped.bam ABLG2193 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2195_sorted_dedup_clipped.bam ABLG2195 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2196_sorted_dedup_clipped.bam ABLG2196 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2198_sorted_dedup_clipped.bam ABLG2198 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2199_sorted_dedup_clipped.bam ABLG2199 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2201_sorted_dedup_clipped.bam ABLG2201 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2204_sorted_dedup_clipped.bam ABLG2204 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2205_sorted_dedup_clipped.bam ABLG2205 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2207_sorted_dedup_clipped.bam ABLG2207 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2211_sorted_dedup_clipped.bam ABLG2211 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2212_sorted_dedup_clipped.bam ABLG2212 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2217_sorted_dedup_clipped.bam ABLG2217 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2219_sorted_dedup_clipped.bam ABLG2219 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2222_sorted_dedup_clipped.bam ABLG2222 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2224_sorted_dedup_clipped.bam ABLG2224 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2225_sorted_dedup_clipped.bam ABLG2225 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2228_sorted_dedup_clipped.bam ABLG2228 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2229_sorted_dedup_clipped.bam ABLG2229 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2231_sorted_dedup_clipped.bam ABLG2231 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2232_sorted_dedup_clipped.bam ABLG2232 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2233_sorted_dedup_clipped.bam ABLG2233 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2235_sorted_dedup_clipped.bam ABLG2235 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2236_sorted_dedup_clipped.bam ABLG2236 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2237_sorted_dedup_clipped.bam ABLG2237 Aleutians /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2239_sorted_dedup_clipped.bam ABLG2239 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2241_sorted_dedup_clipped.bam ABLG2241 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2245_sorted_dedup_clipped.bam ABLG2245 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2278_sorted_dedup_clipped.bam ABLG2278 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2279_sorted_dedup_clipped.bam ABLG2279 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2282_sorted_dedup_clipped.bam ABLG2282 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2286_sorted_dedup_clipped.bam ABLG2286 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2292_sorted_dedup_clipped.bam ABLG2292 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2293_sorted_dedup_clipped.bam ABLG2293 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2298_sorted_dedup_clipped.bam ABLG2298 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2308_sorted_dedup_clipped.bam ABLG2308 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2309_sorted_dedup_clipped.bam ABLG2309 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2314_sorted_dedup_clipped.bam ABLG2314 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2334_sorted_dedup_clipped.bam ABLG2334 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2335_sorted_dedup_clipped.bam ABLG2335 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2336_sorted_dedup_clipped.bam ABLG2336 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2337_sorted_dedup_clipped.bam ABLG2337 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2339_sorted_dedup_clipped.bam ABLG2339 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2340_sorted_dedup_clipped.bam ABLG2340 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2342_sorted_dedup_clipped.bam ABLG2342 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2344_sorted_dedup_clipped.bam ABLG2344 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2346_sorted_dedup_clipped.bam ABLG2346 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2348_sorted_dedup_clipped.bam ABLG2348 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2349_sorted_dedup_clipped.bam ABLG2349 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2350_sorted_dedup_clipped.bam ABLG2350 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2352_sorted_dedup_clipped.bam ABLG2352 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2354_sorted_dedup_clipped.bam ABLG2354 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2356_sorted_dedup_clipped.bam ABLG2356 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2359_sorted_dedup_clipped.bam ABLG2359 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2362_sorted_dedup_clipped.bam ABLG2362 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2363_sorted_dedup_clipped.bam ABLG2363 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2364_sorted_dedup_clipped.bam ABLG2364 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2365_sorted_dedup_clipped.bam ABLG2365 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2366_sorted_dedup_clipped.bam ABLG2366 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2367_sorted_dedup_clipped.bam ABLG2367 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2368_sorted_dedup_clipped.bam ABLG2368 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2369_sorted_dedup_clipped.bam ABLG2369 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2370_sorted_dedup_clipped.bam ABLG2370 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2371_sorted_dedup_clipped.bam ABLG2371 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2377_sorted_dedup_clipped.bam ABLG2377 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2378_sorted_dedup_clipped.bam ABLG2378 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2379_sorted_dedup_clipped.bam ABLG2379 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2380_sorted_dedup_clipped.bam ABLG2380 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2381_sorted_dedup_clipped.bam ABLG2381 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2382_sorted_dedup_clipped.bam ABLG2382 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2383_sorted_dedup_clipped.bam ABLG2383 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2386_sorted_dedup_clipped.bam ABLG2386 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2388_sorted_dedup_clipped.bam ABLG2388 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2394_sorted_dedup_clipped.bam ABLG2394 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2402_sorted_dedup_clipped.bam ABLG2402 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2404_sorted_dedup_clipped.bam ABLG2404 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2405_sorted_dedup_clipped.bam ABLG2405 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2483_sorted_dedup_clipped.bam ABLG2483 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2505_sorted_dedup_clipped.bam ABLG2505 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2510_sorted_dedup_clipped.bam ABLG2510 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2511_sorted_dedup_clipped.bam ABLG2511 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2514_sorted_dedup_clipped.bam ABLG2514 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2515_sorted_dedup_clipped.bam ABLG2515 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2516_sorted_dedup_clipped.bam ABLG2516 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2517_sorted_dedup_clipped.bam ABLG2517 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2518_sorted_dedup_clipped.bam ABLG2518 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2532_sorted_dedup_clipped.bam ABLG2532 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2533_sorted_dedup_clipped.bam ABLG2533 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2535_sorted_dedup_clipped.bam ABLG2535 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2536_sorted_dedup_clipped.bam ABLG2536 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2539_sorted_dedup_clipped.bam ABLG2539 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2541_sorted_dedup_clipped.bam ABLG2541 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2542_sorted_dedup_clipped.bam ABLG2542 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2547_sorted_dedup_clipped.bam ABLG2547 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2551_sorted_dedup_clipped.bam ABLG2551 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2557_sorted_dedup_clipped.bam ABLG2557 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2558_sorted_dedup_clipped.bam ABLG2558 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2563_sorted_dedup_clipped.bam ABLG2563 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2565_sorted_dedup_clipped.bam ABLG2565 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2566_sorted_dedup_clipped.bam ABLG2566 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2578_sorted_dedup_clipped.bam ABLG2578 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2581_sorted_dedup_clipped.bam ABLG2581 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2585_sorted_dedup_clipped.bam ABLG2585 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2591_sorted_dedup_clipped.bam ABLG2591 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2593_sorted_dedup_clipped.bam ABLG2593 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2594_sorted_dedup_clipped.bam ABLG2594 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2596_sorted_dedup_clipped.bam ABLG2596 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2597_sorted_dedup_clipped.bam ABLG2597 NBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2598_sorted_dedup_clipped.bam ABLG2598 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2605_sorted_dedup_clipped.bam ABLG2605 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2608_sorted_dedup_clipped.bam ABLG2608 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2609_sorted_dedup_clipped.bam ABLG2609 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2612_sorted_dedup_clipped.bam ABLG2612 EBS /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2615_sorted_dedup_clipped.bam ABLG2615 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2620_sorted_dedup_clipped.bam ABLG2620 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2621_sorted_dedup_clipped.bam ABLG2621 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2622_sorted_dedup_clipped.bam ABLG2622 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2625_sorted_dedup_clipped.bam ABLG2625 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2627_sorted_dedup_clipped.bam ABLG2627 wGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2642_sorted_dedup_clipped.bam ABLG2642 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2643_sorted_dedup_clipped.bam ABLG2643 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2644_sorted_dedup_clipped.bam ABLG2644 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2646_sorted_dedup_clipped.bam ABLG2646 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2649_sorted_dedup_clipped.bam ABLG2649 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2650_sorted_dedup_clipped.bam ABLG2650 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2652_sorted_dedup_clipped.bam ABLG2652 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2654_sorted_dedup_clipped.bam ABLG2654 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2655_sorted_dedup_clipped.bam ABLG2655 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2657_sorted_dedup_clipped.bam ABLG2657 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2658_sorted_dedup_clipped.bam ABLG2658 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2664_sorted_dedup_clipped.bam ABLG2664 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2667_sorted_dedup_clipped.bam ABLG2667 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2668_sorted_dedup_clipped.bam ABLG2668 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2670_sorted_dedup_clipped.bam ABLG2670 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2671_sorted_dedup_clipped.bam ABLG2671 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2674_sorted_dedup_clipped.bam ABLG2674 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2677_sorted_dedup_clipped.bam ABLG2677 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2678_sorted_dedup_clipped.bam ABLG2678 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2681_sorted_dedup_clipped.bam ABLG2681 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2683_sorted_dedup_clipped.bam ABLG2683 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2684_sorted_dedup_clipped.bam ABLG2684 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2687_sorted_dedup_clipped.bam ABLG2687 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2688_sorted_dedup_clipped.bam ABLG2688 eGOA /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2689_sorted_dedup_clipped.bam ABLG2689 eGOA