1:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10408_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10408_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 2:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10409_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10409_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 3:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10410_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10410_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 4:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10411_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10411_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 5:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10412_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10412_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 6:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10413_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10413_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 7:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10414_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10414_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 8:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10415_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10415_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 9:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10416_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10416_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 10:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10417_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10417_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 11:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10418_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10418_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 12:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10419_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10419_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 13:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10420_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10420_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 14:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10421_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10421_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 15:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10422_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10422_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 16:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10423_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10423_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 17:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10424_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10424_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 18:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10425_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10425_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 19:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10426_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10426_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 20:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10427_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10427_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 21:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10428_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10428_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 22:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10429_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10429_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 23:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10430_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10430_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 24:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10431_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10431_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 25:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10432_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10432_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 26:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10433_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10433_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 27:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10434_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10434_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 28:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10435_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10435_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 29:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10436_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10436_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 30:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10437_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10437_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 31:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10438_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10438_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 32:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10439_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10439_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 33:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10440_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10440_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 34:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10441_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10441_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 35:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10442_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10442_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 36:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10443_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10443_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 37:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10444_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10444_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 38:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10445_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10445_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 39:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10446_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10446_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 40:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10447_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10447_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 41:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10448_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10448_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 42:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10449_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10449_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 43:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10450_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10450_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 44:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10451_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10451_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 45:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10452_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10452_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 46:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10453_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10453_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 47:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10454_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10454_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 48:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10455_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10455_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 49:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10458_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10458_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 50:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10459_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10459_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 51:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10460_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10460_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 52:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10461_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10461_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 53:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10462_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10462_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 54:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10463_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10463_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 55:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10464_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10464_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 56:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10465_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10465_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 57:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10466_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10466_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 58:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10467_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10467_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 59:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10468_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10468_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 60:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10469_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10469_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 61:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10470_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10470_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 62:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10471_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10471_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 63:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10472_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10472_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 64:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10473_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10473_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 65:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10474_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10474_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 66:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10475_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10475_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 67:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10476_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10476_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 68:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10477_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10477_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 69:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10478_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10478_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 70:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10479_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10479_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 71:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10480_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10480_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 72:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10481_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10481_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 73:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10482_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10482_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 74:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10483_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10483_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 75:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10484_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10484_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 76:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10485_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10485_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 77:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10486_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10486_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 78:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10487_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10487_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 79:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10488_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10488_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 80:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10489_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10489_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 81:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10490_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10490_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 82:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10491_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10491_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 83:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10492_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10492_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 84:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10493_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10493_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 85:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10494_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10494_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 86:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10495_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10495_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 87:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10496_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10496_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 88:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10497_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10497_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 89:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10498_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10498_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 90:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10499_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10499_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 91:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10500_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10500_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 92:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10502_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10502_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 93:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10718_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10718_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 94:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10719_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10719_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 95:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10720_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10720_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 96:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10721_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10721_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 97:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10723_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10723_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 98:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10724_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10724_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 99:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10725_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10725_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 100:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10728_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10728_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 101:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10729_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10729_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 102:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10730_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10730_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 103:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10731_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10731_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 104:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10732_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10732_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 105:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10733_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10733_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 106:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10734_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10734_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 107:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10735_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10735_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 108:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10737_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10737_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 109:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10738_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10738_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 110:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10739_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10739_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 111:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10740_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10740_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 112:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10742_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10742_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 113:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10743_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10743_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 114:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10744_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10744_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 115:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10746_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10746_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 116:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10747_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10747_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 117:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10749_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10749_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 118:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10752_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10752_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 119:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10753_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10753_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 120:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10755_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10755_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 121:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10757_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10757_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 122:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10758_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10758_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 123:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10759_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10759_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 124:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10761_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10761_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 125:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10763_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10763_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 126:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10764_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10764_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 127:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10818_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10818_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 128:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10820_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10820_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 129:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10821_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10821_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 130:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10823_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10823_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 131:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10824_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10824_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 132:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10825_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10825_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 133:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10827_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10827_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 134:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10828_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10828_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 135:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10832_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10832_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 136:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10833_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10833_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 137:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10834_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10834_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 138:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10836_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10836_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 139:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10837_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10837_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 140:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10839_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10839_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 141:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10843_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10843_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 142:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10844_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10844_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 143:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10846_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10846_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 144:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10847_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10847_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 145:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10849_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10849_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 146:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10850_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10850_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 147:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10851_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10851_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 148:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10852_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10852_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 149:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10853_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10853_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 150:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10854_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10854_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 151:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10855_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10855_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 152:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10856_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10856_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 153:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10857_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10857_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 154:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10858_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10858_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 155:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10859_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10859_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 156:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10860_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10860_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 157:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10861_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10861_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 158:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10862_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10862_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 159:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10863_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10863_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 160:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10864_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10864_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 161:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10865_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10865_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 162:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10866_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10866_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 163:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10867_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10867_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 164:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10868_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10868_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 165:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10915_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10915_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 166:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10916_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10916_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 167:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10917_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10917_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 168:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10918_CKDL220014344-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10918_CKDL220014344-1A_HY5KWDSX3_L2_2.fq.gz 169:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10920_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10920_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 170:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10921_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10921_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 171:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10922_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10922_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 172:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10923_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10923_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 173:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10928_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10928_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 174:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10930_CKDL220014345-1A_HY5KWDSX3_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG10930_CKDL220014345-1A_HY5KWDSX3_L2_2.fq.gz 175:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1927_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1927_2-renamed.fq.gz 176:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1928_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1928_2-renamed.fq.gz 177:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1929_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1929_2-renamed.fq.gz 178:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1930_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1930_2-renamed.fq.gz 179:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1931_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1931_2-renamed.fq.gz 180:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1932_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1932_2-renamed.fq.gz 181:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1936_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1936_2-renamed.fq.gz 182:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1937_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1937_2-renamed.fq.gz 183:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1938_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1938_2-renamed.fq.gz 184:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1941_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1941_2-renamed.fq.gz 185:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1942_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1942_2-renamed.fq.gz 186:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1943_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1943_2-renamed.fq.gz 187:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1944_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1944_2-renamed.fq.gz 188:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1945_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1945_2-renamed.fq.gz 189:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1946_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1946_2-renamed.fq.gz 190:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1947_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1947_2-renamed.fq.gz 191:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1948_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1948_2-renamed.fq.gz 192:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1950_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1950_2-renamed.fq.gz 193:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1952_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1952_2-renamed.fq.gz 194:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1953_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1953_2-renamed.fq.gz 195:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1955_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1955_2-renamed.fq.gz 196:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1956_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1956_2-renamed.fq.gz 197:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1957_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1957_2-renamed.fq.gz 198:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1958_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1958_2-renamed.fq.gz 199:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1961_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1961_2-renamed.fq.gz 200:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1962_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1962_2-renamed.fq.gz 201:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1963_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1963_2-renamed.fq.gz 202:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1965_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1965_2-renamed.fq.gz 203:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1968_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1968_2-renamed.fq.gz 204:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1969_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1969_2-renamed.fq.gz 205:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1970_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1970_2-renamed.fq.gz 206:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1971_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1971_2-renamed.fq.gz 207:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1972_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1972_2-renamed.fq.gz 208:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1974_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1974_2-renamed.fq.gz 209:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1975_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1975_2-renamed.fq.gz 210:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1976_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1976_2-renamed.fq.gz 211:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1977_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1977_2-renamed.fq.gz 212:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19808_S1_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19808_S1_L003_R2_001.fastq.gz 213:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19810_S8_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19810_S8_L003_R2_001.fastq.gz 214:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1981_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1981_2-renamed.fq.gz 215:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19811_S9_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19811_S9_L003_R2_001.fastq.gz 216:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19812_S10_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19812_S10_L003_R2_001.fastq.gz 217:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19813_S11_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19813_S11_L003_R2_001.fastq.gz 218:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19814_S2_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19814_S2_L003_R2_001.fastq.gz 219:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19816_S12_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19816_S12_L003_R2_001.fastq.gz 220:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19817_S13_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19817_S13_L003_R2_001.fastq.gz 221:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19819_S14_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19819_S14_L003_R2_001.fastq.gz 222:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19820_S15_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19820_S15_L003_R2_001.fastq.gz 223:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1982_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1982_2-renamed.fq.gz 224:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19821_S16_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19821_S16_L003_R2_001.fastq.gz 225:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19822_S17_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19822_S17_L003_R2_001.fastq.gz 226:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19823_S18_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19823_S18_L003_R2_001.fastq.gz 227:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19824_S19_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19824_S19_L003_R2_001.fastq.gz 228:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19826_S20_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19826_S20_L003_R2_001.fastq.gz 229:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19827_S21_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19827_S21_L003_R2_001.fastq.gz 230:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19828_S22_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19828_S22_L003_R2_001.fastq.gz 231:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19829_S23_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19829_S23_L003_R2_001.fastq.gz 232:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19830_S24_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19830_S24_L003_R2_001.fastq.gz 233:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19831_S3_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19831_S3_L003_R2_001.fastq.gz 234:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19832_S25_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19832_S25_L003_R2_001.fastq.gz 235:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19833_S26_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19833_S26_L003_R2_001.fastq.gz 236:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19834_S4_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19834_S4_L003_R2_001.fastq.gz 237:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19835_S27_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19835_S27_L003_R2_001.fastq.gz 238:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19836_S28_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19836_S28_L003_R2_001.fastq.gz 239:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19839_S29_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19839_S29_L003_R2_001.fastq.gz 240:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19840_S5_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19840_S5_L003_R2_001.fastq.gz 241:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19841_S30_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19841_S30_L003_R2_001.fastq.gz 242:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19842_S31_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19842_S31_L003_R2_001.fastq.gz 243:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19843_S32_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19843_S32_L003_R2_001.fastq.gz 244:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19848_S6_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19848_S6_L003_R2_001.fastq.gz 245:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19849_S33_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19849_S33_L003_R2_001.fastq.gz 246:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19850_S34_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19850_S34_L003_R2_001.fastq.gz 247:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19851_S35_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19851_S35_L003_R2_001.fastq.gz 248:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19852_S36_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19852_S36_L003_R2_001.fastq.gz 249:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19853_S37_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19853_S37_L003_R2_001.fastq.gz 250:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19854_S38_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19854_S38_L003_R2_001.fastq.gz 251:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19856_S39_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19856_S39_L003_R2_001.fastq.gz 252:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19857_S40_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19857_S40_L003_R2_001.fastq.gz 253:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19861_S41_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19861_S41_L003_R2_001.fastq.gz 254:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19862_S42_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19862_S42_L003_R2_001.fastq.gz 255:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19865_S43_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19865_S43_L003_R2_001.fastq.gz 256:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19866_S44_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19866_S44_L003_R2_001.fastq.gz 257:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19867_S45_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19867_S45_L003_R2_001.fastq.gz 258:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19869_S46_L003_R1_001.fastq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG19869_S46_L003_R2_001.fastq.gz 259:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1987_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1987_2-renamed.fq.gz 260:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1988_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1988_2-renamed.fq.gz 261:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1990_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1990_2-renamed.fq.gz 262:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1991_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1991_2-renamed.fq.gz 263:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1992_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1992_2-renamed.fq.gz 264:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1993_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1993_2-renamed.fq.gz 265:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1994_CKDL210009362-1a-AK1586-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1994_CKDL210009362-1a-AK1586-AK394_H5CHMDSX2_L4_2.fq.gz 266:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1996_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1996_2-renamed.fq.gz 267:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1997_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1997_2-renamed.fq.gz 268:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1999_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG1999_2-renamed.fq.gz 269:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2004_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2004_2-renamed.fq.gz 270:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2005_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2005_2-renamed.fq.gz 271:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2009_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2009_2-renamed.fq.gz 272:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2010_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2010_2-renamed.fq.gz 273:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2012_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2012_2-renamed.fq.gz 274:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2013_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2013_2-renamed.fq.gz 275:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2014_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2014_2-renamed.fq.gz 276:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2017_CKDL210009362-1a-AK1579-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2017_CKDL210009362-1a-AK1579-AK413_H5CHMDSX2_L4_2.fq.gz 277:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2018_CKDL210009362-1a-AK1586-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2018_CKDL210009362-1a-AK1586-AK425_H5CHMDSX2_L4_2.fq.gz 278:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2020_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2020_2-renamed.fq.gz 279:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2021_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2021_2-renamed.fq.gz 280:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2022_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2022_2-renamed.fq.gz 281:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2023_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2023_2-renamed.fq.gz 282:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2027_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2027_2-renamed.fq.gz 283:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2032_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2032_2-renamed.fq.gz 284:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2037_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2037_2-renamed.fq.gz 285:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2042_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2042_2-renamed.fq.gz 286:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2045_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2045_2-renamed.fq.gz 287:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2054_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2054_2-renamed.fq.gz 288:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2060_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2060_2-renamed.fq.gz 289:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2063_CKDL210009362-1a-AK1586-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2063_CKDL210009362-1a-AK1586-AK413_H5CHMDSX2_L4_2.fq.gz 290:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2065_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2065_2-renamed.fq.gz 291:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2067_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2067_2-renamed.fq.gz 292:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2071_CKDL210009362-1a-AK1579-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2071_CKDL210009362-1a-AK1579-AK427_H5CHMDSX2_L4_2.fq.gz 293:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2076_CKDL210009362-1a-AK1858-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2076_CKDL210009362-1a-AK1858-AK427_H5CHMDSX2_L4_2.fq.gz 294:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2077_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2077_2-renamed.fq.gz 295:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2079_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2079_2-renamed.fq.gz 296:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2080_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2080_2-renamed.fq.gz 297:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2082_CKDL210009362-1a-AK1572-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2082_CKDL210009362-1a-AK1572-AK425_H5CHMDSX2_L4_2.fq.gz 298:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2083_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2083_2-renamed.fq.gz 299:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2086_CKDL210009363-1a-N712-N508_H5CHMDSX2_L1_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2086_CKDL210009363-1a-N712-N508_H5CHMDSX2_L1_2.fq.gz 300:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2087_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2087_2-renamed.fq.gz 301:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2088_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2088_2-renamed.fq.gz 302:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2090_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2090_2-renamed.fq.gz 303:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2091_CKDL210009362-1a-AK1581-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2091_CKDL210009362-1a-AK1581-AK413_H5CHMDSX2_L4_2.fq.gz 304:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2092_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2092_2-renamed.fq.gz 305:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2093_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2093_2-renamed.fq.gz 306:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2094_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2094_2-renamed.fq.gz 307:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2095_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2095_2-renamed.fq.gz 308:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2096_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2096_2-renamed.fq.gz 309:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2097_CKDL210009362-1a-AK1579-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2097_CKDL210009362-1a-AK1579-AK425_H5CHMDSX2_L4_2.fq.gz 310:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2098_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2098_2-renamed.fq.gz 311:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2099_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2099_2-renamed.fq.gz 312:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2100_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2100_2-renamed.fq.gz 313:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2101_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2101_2-renamed.fq.gz 314:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2102_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2102_2-renamed.fq.gz 315:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2103_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2103_2-renamed.fq.gz 316:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2104_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2104_2-renamed.fq.gz 317:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2105_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2105_2-renamed.fq.gz 318:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2107_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2107_2-renamed.fq.gz 319:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2108_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2108_2-renamed.fq.gz 320:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2109_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2109_2-renamed.fq.gz 321:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2110_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2110_2-renamed.fq.gz 322:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2111_CKDL210009362-1a-AK1581-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2111_CKDL210009362-1a-AK1581-AK427_H5CHMDSX2_L4_2.fq.gz 323:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2112_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2112_2-renamed.fq.gz 324:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2113_CKDL210009362-1a-AK1858-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2113_CKDL210009362-1a-AK1858-AK425_H5CHMDSX2_L4_2.fq.gz 325:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2114_CKDL210009362-1a-AK1581-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2114_CKDL210009362-1a-AK1581-AK394_H5CHMDSX2_L4_2.fq.gz 326:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2115_CKDL210009362-1a-AK1858-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2115_CKDL210009362-1a-AK1858-AK394_H5CHMDSX2_L4_2.fq.gz 327:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2116_CKDL210009362-1a-AK1858-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2116_CKDL210009362-1a-AK1858-AK413_H5CHMDSX2_L4_2.fq.gz 328:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2117_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2117_2-renamed.fq.gz 329:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2118_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2118_2-renamed.fq.gz 330:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2120_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2120_2-renamed.fq.gz 331:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2121_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2121_2-renamed.fq.gz 332:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2123_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2123_2-renamed.fq.gz 333:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2124_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2124_2-renamed.fq.gz 334:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2125_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2125_2-renamed.fq.gz 335:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2126_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2126_2-renamed.fq.gz 336:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2127_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2127_2-renamed.fq.gz 337:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2129_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2129_2-renamed.fq.gz 338:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2132_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2132_2-renamed.fq.gz 339:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2133_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2133_2-renamed.fq.gz 340:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2134_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2134_2-renamed.fq.gz 341:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2135_CKDL210009362-1a-AK1584-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2135_CKDL210009362-1a-AK1584-AK394_H5CHMDSX2_L4_2.fq.gz 342:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2136_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2136_2-renamed.fq.gz 343:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2137_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2137_2-renamed.fq.gz 344:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2138_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2138_2-renamed.fq.gz 345:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2139_CKDL210009362-1a-AK1568-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2139_CKDL210009362-1a-AK1568-AK394_H5CHMDSX2_L4_2.fq.gz 346:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2140_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2140_2-renamed.fq.gz 347:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2141_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2141_2-renamed.fq.gz 348:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2142_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2142_2-renamed.fq.gz 349:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2143_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2143_2-renamed.fq.gz 350:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2144_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2144_2-renamed.fq.gz 351:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2145_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2145_2-renamed.fq.gz 352:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2146_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2146_2-renamed.fq.gz 353:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2147_CKDL210009362-1a-AK1568-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2147_CKDL210009362-1a-AK1568-AK413_H5CHMDSX2_L4_2.fq.gz 354:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2149_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2149_2-renamed.fq.gz 355:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2150_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2150_2-renamed.fq.gz 356:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2151_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2151_2-renamed.fq.gz 357:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2152_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2152_2-renamed.fq.gz 358:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2153_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2153_2-renamed.fq.gz 359:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2154_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2154_2-renamed.fq.gz 360:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2155_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2155_2-renamed.fq.gz 361:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2156_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2156_2-renamed.fq.gz 362:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2157_CKDL210009361-1a-N706-N508_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2157_CKDL210009361-1a-N706-N508_H5CHMDSX2_L4_2.fq.gz 363:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2158_CKDL210009362-1a-AK1572-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2158_CKDL210009362-1a-AK1572-AK413_H5CHMDSX2_L4_2.fq.gz 364:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2159_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2159_2-renamed.fq.gz 365:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2160_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2160_2-renamed.fq.gz 366:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2161_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2161_2-renamed.fq.gz 367:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2162_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2162_2-renamed.fq.gz 368:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2163_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2163_2-renamed.fq.gz 369:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2164_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2164_2-renamed.fq.gz 370:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2165_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2165_2-renamed.fq.gz 371:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2166_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2166_2-renamed.fq.gz 372:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2167_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2167_2-renamed.fq.gz 373:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2168_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2168_2-renamed.fq.gz 374:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2169_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2169_2-renamed.fq.gz 375:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2170_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2170_2-renamed.fq.gz 376:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2171_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2171_2-renamed.fq.gz 377:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2172_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2172_2-renamed.fq.gz 378:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2173_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2173_2-renamed.fq.gz 379:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2174_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2174_2-renamed.fq.gz 380:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2175_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2175_2-renamed.fq.gz 381:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2176_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2176_2-renamed.fq.gz 382:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2177_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2177_2-renamed.fq.gz 383:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2178_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2178_2-renamed.fq.gz 384:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2179_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2179_2-renamed.fq.gz 385:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2181_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2181_2-renamed.fq.gz 386:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2182_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2182_2-renamed.fq.gz 387:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2184_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2184_2-renamed.fq.gz 388:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2185_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2185_2-renamed.fq.gz 389:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2186_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2186_2-renamed.fq.gz 390:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2188_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2188_2-renamed.fq.gz 391:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2189_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2189_2-renamed.fq.gz 392:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2193_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2193_2-renamed.fq.gz 393:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2194_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2194_2-renamed.fq.gz 394:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2195_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2195_2-renamed.fq.gz 395:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2196_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2196_2-renamed.fq.gz 396:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2198_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2198_2-renamed.fq.gz 397:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2199_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2199_2-renamed.fq.gz 398:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2201_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2201_2-renamed.fq.gz 399:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2203_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2203_2-renamed.fq.gz 400:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2204_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2204_2-renamed.fq.gz 401:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2205_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2205_2-renamed.fq.gz 402:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2206_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2206_2-renamed.fq.gz 403:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2207_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2207_2-renamed.fq.gz 404:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2208_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2208_2-renamed.fq.gz 405:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2209_CKDL210009362-1a-AK1860-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2209_CKDL210009362-1a-AK1860-AK425_H5CHMDSX2_L4_2.fq.gz 406:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2210_CKDL210009362-1a-AK1585-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2210_CKDL210009362-1a-AK1585-AK394_H5CHMDSX2_L4_2.fq.gz 407:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2211_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2211_2-renamed.fq.gz 408:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2212_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2212_2-renamed.fq.gz 409:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2213_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2213_2-renamed.fq.gz 410:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2215_CKDL210009362-1a-AK1860-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2215_CKDL210009362-1a-AK1860-AK427_H5CHMDSX2_L4_2.fq.gz 411:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2216_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2216_2-renamed.fq.gz 412:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2217_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2217_2-renamed.fq.gz 413:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2218_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2218_2-renamed.fq.gz 414:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2219_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2219_2-renamed.fq.gz 415:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2220_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2220_2-renamed.fq.gz 416:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2221_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2221_2-renamed.fq.gz 417:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2222_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2222_2-renamed.fq.gz 418:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2223_CKDL210009362-1a-AK1584-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2223_CKDL210009362-1a-AK1584-AK413_H5CHMDSX2_L4_2.fq.gz 419:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2224_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2224_2-renamed.fq.gz 420:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2225_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2225_2-renamed.fq.gz 421:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2226_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2226_2-renamed.fq.gz 422:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2228_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2228_2-renamed.fq.gz 423:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2229_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2229_2-renamed.fq.gz 424:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2230_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2230_2-renamed.fq.gz 425:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2231_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2231_2-renamed.fq.gz 426:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2232_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2232_2-renamed.fq.gz 427:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2233_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2233_2-renamed.fq.gz 428:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2235_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2235_2-renamed.fq.gz 429:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2236_CKDL210009362-1a-AK1583-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2236_CKDL210009362-1a-AK1583-AK425_H5CHMDSX2_L4_2.fq.gz 430:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2237_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2237_2-renamed.fq.gz 431:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2238_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2238_2-renamed.fq.gz 432:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2239_CKDL210009362-1a-AK1568-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2239_CKDL210009362-1a-AK1568-AK427_H5CHMDSX2_L4_2.fq.gz 433:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2241_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2241_2-renamed.fq.gz 434:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2244_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2244_2-renamed.fq.gz 435:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2245_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2245_2-renamed.fq.gz 436:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2276_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2276_2-renamed.fq.gz 437:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2278_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2278_2-renamed.fq.gz 438:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2279_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2279_2-renamed.fq.gz 439:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2282_CKDL210009362-1a-AK1585-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2282_CKDL210009362-1a-AK1585-AK427_H5CHMDSX2_L4_2.fq.gz 440:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2286_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2286_2-renamed.fq.gz 441:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2287_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2287_2-renamed.fq.gz 442:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2288_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2288_2-renamed.fq.gz 443:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2289_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2289_2-renamed.fq.gz 444:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2292_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2292_2-renamed.fq.gz 445:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2293_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2293_2-renamed.fq.gz 446:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2298_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2298_2-renamed.fq.gz 447:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2302_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2302_2-renamed.fq.gz 448:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2304_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2304_2-renamed.fq.gz 449:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2305_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2305_2-renamed.fq.gz 450:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2306_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2306_2-renamed.fq.gz 451:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2308_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2308_2-renamed.fq.gz 452:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2309_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2309_2-renamed.fq.gz 453:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2310_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2310_2-renamed.fq.gz 454:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2312_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2312_2-renamed.fq.gz 455:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2314_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2314_2-renamed.fq.gz 456:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2317_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2317_2-renamed.fq.gz 457:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2318_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2318_2-renamed.fq.gz 458:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2322_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2322_2-renamed.fq.gz 459:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2331_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2331_2-renamed.fq.gz 460:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2334_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2334_2-renamed.fq.gz 461:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2335_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2335_2-renamed.fq.gz 462:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2336_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2336_2-renamed.fq.gz 463:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2337_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2337_2-renamed.fq.gz 464:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2338_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2338_2-renamed.fq.gz 465:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2339_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2339_2-renamed.fq.gz 466:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2340_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2340_2-renamed.fq.gz 467:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2341_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2341_2-renamed.fq.gz 468:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2342_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2342_2-renamed.fq.gz 469:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2343_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2343_2-renamed.fq.gz 470:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2344_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2344_2-renamed.fq.gz 471:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2345_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2345_2-renamed.fq.gz 472:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2346_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2346_2-renamed.fq.gz 473:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2347_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2347_2-renamed.fq.gz 474:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2348_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2348_2-renamed.fq.gz 475:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2349_CKDL210009362-1a-AK1859-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2349_CKDL210009362-1a-AK1859-AK425_H5CHMDSX2_L4_2.fq.gz 476:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2350_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2350_2-renamed.fq.gz 477:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2351_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2351_2-renamed.fq.gz 478:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2352_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2352_2-renamed.fq.gz 479:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2353_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2353_2-renamed.fq.gz 480:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2354_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2354_2-renamed.fq.gz 481:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2356_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2356_2-renamed.fq.gz 482:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2357_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2357_2-renamed.fq.gz 483:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2358_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2358_2-renamed.fq.gz 484:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2359_CKDL210009362-1a-AK1584-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2359_CKDL210009362-1a-AK1584-AK427_H5CHMDSX2_L4_2.fq.gz 485:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2362_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2362_2-renamed.fq.gz 486:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2363_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2363_2-renamed.fq.gz 487:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2364_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2364_2-renamed.fq.gz 488:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2365_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2365_2-renamed.fq.gz 489:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2366_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2366_2-renamed.fq.gz 490:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2367_CKDL210009362-1a-AK1582-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2367_CKDL210009362-1a-AK1582-AK425_H5CHMDSX2_L4_2.fq.gz 491:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2368_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2368_2-renamed.fq.gz 492:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2369_CKDL210009362-1a-AK1859-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2369_CKDL210009362-1a-AK1859-AK427_H5CHMDSX2_L4_2.fq.gz 493:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2370_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2370_2-renamed.fq.gz 494:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2371_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2371_2-renamed.fq.gz 495:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2377_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2377_2-renamed.fq.gz 496:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2378_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2378_2-renamed.fq.gz 497:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2379_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2379_2-renamed.fq.gz 498:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2380_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2380_2-renamed.fq.gz 499:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2381_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2381_2-renamed.fq.gz 500:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2382_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2382_2-renamed.fq.gz 501:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2383_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2383_2-renamed.fq.gz 502:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2386_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2386_2-renamed.fq.gz 503:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2388_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2388_2-renamed.fq.gz 504:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2389_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2389_2-renamed.fq.gz 505:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2394_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2394_2-renamed.fq.gz 506:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2396_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2396_2-renamed.fq.gz 507:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2402_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2402_2-renamed.fq.gz 508:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2404_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2404_2-renamed.fq.gz 509:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2405_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2405_2-renamed.fq.gz 510:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2483_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2483_2-renamed.fq.gz 511:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2490_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2490_2-renamed.fq.gz 512:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2501_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2501_2-renamed.fq.gz 513:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2504_CKDL210009366-1a-AK1582-AK417_H5CHMDSX2_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2504_CKDL210009366-1a-AK1582-AK417_H5CHMDSX2_L2_2.fq.gz 514:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2505_CKDL210009362-1a-AK1583-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2505_CKDL210009362-1a-AK1583-AK413_H5CHMDSX2_L4_2.fq.gz 515:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2506_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2506_2-renamed.fq.gz 516:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2507_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2507_2-renamed.fq.gz 517:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2508_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2508_2-renamed.fq.gz 518:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2509_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2509_2-renamed.fq.gz 519:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2510_CKDL210009365-1a-N701-N501_H5CHMDSX2_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2510_CKDL210009365-1a-N701-N501_H5CHMDSX2_L2_2.fq.gz 520:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2511_CKDL210009363-1a-N701-N501_H5CHMDSX2_L1_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2511_CKDL210009363-1a-N701-N501_H5CHMDSX2_L1_2.fq.gz 521:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2512_CKDL210009364-1a-AK1582-AK417_H5CHMDSX2_L1_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2512_CKDL210009364-1a-AK1582-AK417_H5CHMDSX2_L1_2.fq.gz 522:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2513_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2513_2-renamed.fq.gz 523:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2514_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2514_2-renamed.fq.gz 524:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2515_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2515_2-renamed.fq.gz 525:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2516_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2516_2-renamed.fq.gz 526:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2517_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2517_2-renamed.fq.gz 527:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2518_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2518_2-renamed.fq.gz 528:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2531_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2531_2-renamed.fq.gz 529:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2532_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2532_2-renamed.fq.gz 530:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2533_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2533_2-renamed.fq.gz 531:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2534_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2534_2-renamed.fq.gz 532:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2535_CKDL210009362-1a-AK1860-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2535_CKDL210009362-1a-AK1860-AK413_H5CHMDSX2_L4_2.fq.gz 533:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2536_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2536_2-renamed.fq.gz 534:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2537_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2537_2-renamed.fq.gz 535:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2538_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2538_2-renamed.fq.gz 536:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2539_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2539_2-renamed.fq.gz 537:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2540_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2540_2-renamed.fq.gz 538:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2541_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2541_2-renamed.fq.gz 539:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2542_CKDL210009362-1a-AK1583-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2542_CKDL210009362-1a-AK1583-AK394_H5CHMDSX2_L4_2.fq.gz 540:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2543_CKDL210009362-1a-AK1860-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2543_CKDL210009362-1a-AK1860-AK394_H5CHMDSX2_L4_2.fq.gz 541:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2544_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2544_2-renamed.fq.gz 542:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2545_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2545_2-renamed.fq.gz 543:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2546_CKDL210009362-1a-AK1583-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2546_CKDL210009362-1a-AK1583-AK427_H5CHMDSX2_L4_2.fq.gz 544:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2547_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2547_2-renamed.fq.gz 545:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2548_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2548_2-renamed.fq.gz 546:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2549_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2549_2-renamed.fq.gz 547:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2550_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2550_2-renamed.fq.gz 548:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2551_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2551_2-renamed.fq.gz 549:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2552_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2552_2-renamed.fq.gz 550:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2553_CKDL210009362-1a-AK1859-AK413_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2553_CKDL210009362-1a-AK1859-AK413_H5CHMDSX2_L4_2.fq.gz 551:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2554_CKDL210009362-1a-AK1582-AK427_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2554_CKDL210009362-1a-AK1582-AK427_H5CHMDSX2_L4_2.fq.gz 552:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2555_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2555_2-renamed.fq.gz 553:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2556_CKDL210009362-1a-AK1582-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2556_CKDL210009362-1a-AK1582-AK394_H5CHMDSX2_L4_2.fq.gz 554:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2557_CKDL210009362-1a-AK1581-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2557_CKDL210009362-1a-AK1581-AK425_H5CHMDSX2_L4_2.fq.gz 555:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2558_CKDL210009362-1a-AK1859-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2558_CKDL210009362-1a-AK1859-AK394_H5CHMDSX2_L4_2.fq.gz 556:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2559_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2559_2-renamed.fq.gz 557:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2561_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2561_2-renamed.fq.gz 558:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2563_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2563_2-renamed.fq.gz 559:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2565_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2565_2-renamed.fq.gz 560:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2566_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2566_2-renamed.fq.gz 561:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2568_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2568_2-renamed.fq.gz 562:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2571_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2571_2-renamed.fq.gz 563:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2572_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2572_2-renamed.fq.gz 564:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2575_CKDL210009362-1a-AK1572-AK394_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2575_CKDL210009362-1a-AK1572-AK394_H5CHMDSX2_L4_2.fq.gz 565:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2576_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2576_2-renamed.fq.gz 566:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2577_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2577_2-renamed.fq.gz 567:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2578_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2578_2-renamed.fq.gz 568:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2579_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2579_2-renamed.fq.gz 569:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2581_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2581_2-renamed.fq.gz 570:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2582_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2582_2-renamed.fq.gz 571:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2585_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2585_2-renamed.fq.gz 572:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2588_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2588_2-renamed.fq.gz 573:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2591_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2591_2-renamed.fq.gz 574:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2592_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2592_2-renamed.fq.gz 575:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2593_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2593_2-renamed.fq.gz 576:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2594_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2594_2-renamed.fq.gz 577:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2596_CKDL210009362-1a-AK1584-AK425_H5CHMDSX2_L4_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2596_CKDL210009362-1a-AK1584-AK425_H5CHMDSX2_L4_2.fq.gz 578:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2597_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2597_2-renamed.fq.gz 579:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2598_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2598_2-renamed.fq.gz 580:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2600_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2600_2-renamed.fq.gz 581:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2605_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2605_2-renamed.fq.gz 582:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2607_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2607_2-renamed.fq.gz 583:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2608_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2608_2-renamed.fq.gz 584:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2609_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2609_2-renamed.fq.gz 585:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2611_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2611_2-renamed.fq.gz 586:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2612_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2612_2-renamed.fq.gz 587:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2613_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2613_2-renamed.fq.gz 588:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2615_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2615_2-renamed.fq.gz 589:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2617_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2617_2-renamed.fq.gz 590:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2619_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2619_2-renamed.fq.gz 591:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2620_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2620_2-renamed.fq.gz 592:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2621_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2621_2-renamed.fq.gz 593:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2622_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2622_2-renamed.fq.gz 594:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2625_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2625_2-renamed.fq.gz 595:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2627_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2627_2-renamed.fq.gz 596:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2640_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2640_2-renamed.fq.gz 597:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2641_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2641_2-renamed.fq.gz 598:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2642_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2642_2-renamed.fq.gz 599:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2643_CKDL210009364-1a-AK1581-AK425_H5CHMDSX2_L1_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2643_CKDL210009364-1a-AK1581-AK425_H5CHMDSX2_L1_2.fq.gz 600:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2644_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2644_2-renamed.fq.gz 601:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2645_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2645_2-renamed.fq.gz 602:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2646_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2646_2-renamed.fq.gz 603:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2648_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2648_2-renamed.fq.gz 604:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2649_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2649_2-renamed.fq.gz 605:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2650_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2650_2-renamed.fq.gz 606:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2651_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2651_2-renamed.fq.gz 607:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2652_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2652_2-renamed.fq.gz 608:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2653_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2653_2-renamed.fq.gz 609:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2654_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2654_2-renamed.fq.gz 610:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2655_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2655_2-renamed.fq.gz 611:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2656_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2656_2-renamed.fq.gz 612:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2657_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2657_2-renamed.fq.gz 613:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2658_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2658_2-renamed.fq.gz 614:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2659_CKDL210009365-1a-N712-N508_H5CHMDSX2_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2659_CKDL210009365-1a-N712-N508_H5CHMDSX2_L2_2.fq.gz 615:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2661_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2661_2-renamed.fq.gz 616:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2662_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2662_2-renamed.fq.gz 617:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2663_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2663_2-renamed.fq.gz 618:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2664_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2664_2-renamed.fq.gz 619:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2665_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2665_2-renamed.fq.gz 620:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2666_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2666_2-renamed.fq.gz 621:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2667_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2667_2-renamed.fq.gz 622:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2668_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2668_2-renamed.fq.gz 623:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2669_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2669_2-renamed.fq.gz 624:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2670_CKDL210009366-1a-AK1581-AK425_H5CHMDSX2_L2_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2670_CKDL210009366-1a-AK1581-AK425_H5CHMDSX2_L2_2.fq.gz 625:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2671_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2671_2-renamed.fq.gz 626:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2672_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2672_2-renamed.fq.gz 627:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2673_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2673_2-renamed.fq.gz 628:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2674_CKDL210009367-1a-N701-N501_H5CHMDSX2_L3_1.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2674_CKDL210009367-1a-N701-N501_H5CHMDSX2_L3_2.fq.gz 629:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2675_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2675_2-renamed.fq.gz 630:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2676_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2676_2-renamed.fq.gz 631:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2677_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2677_2-renamed.fq.gz 632:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2678_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2678_2-renamed.fq.gz 633:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2679_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2679_2-renamed.fq.gz 634:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2680_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2680_2-renamed.fq.gz 635:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2681_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2681_2-renamed.fq.gz 636:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2682_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2682_2-renamed.fq.gz 637:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2683_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2683_2-renamed.fq.gz 638:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2684_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2684_2-renamed.fq.gz 639:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2685_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2685_2-renamed.fq.gz 640:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2687_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2687_2-renamed.fq.gz 641:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2688_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2688_2-renamed.fq.gz 642:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2689_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2689_2-renamed.fq.gz 643:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2920_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2920_2-renamed.fq.gz 644:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2923_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2923_2-renamed.fq.gz 645:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2924_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2924_2-renamed.fq.gz 646:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2926_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2926_2-renamed.fq.gz 647:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2927_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2927_2-renamed.fq.gz 648:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2928_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2928_2-renamed.fq.gz 649:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2929_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2929_2-renamed.fq.gz 650:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2930_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2930_2-renamed.fq.gz 651:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2931_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2931_2-renamed.fq.gz 652:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2935_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2935_2-renamed.fq.gz 653:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2936_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2936_2-renamed.fq.gz 654:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2937_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2937_2-renamed.fq.gz 655:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2938_1-renamed.fq.gz:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/ABLG2938_2-renamed.fq.gz