1:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10408_trimmed_clipped_R1_paired.fq.gz 2:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10408_trimmed_clipped_R2_paired.fq.gz 3:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10409_trimmed_clipped_R1_paired.fq.gz 4:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10409_trimmed_clipped_R2_paired.fq.gz 5:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10410_trimmed_clipped_R1_paired.fq.gz 6:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10410_trimmed_clipped_R2_paired.fq.gz 7:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10411_trimmed_clipped_R1_paired.fq.gz 8:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10411_trimmed_clipped_R2_paired.fq.gz 9:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10412_trimmed_clipped_R1_paired.fq.gz 10:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10412_trimmed_clipped_R2_paired.fq.gz 11:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10413_trimmed_clipped_R1_paired.fq.gz 12:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10413_trimmed_clipped_R2_paired.fq.gz 13:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10414_trimmed_clipped_R1_paired.fq.gz 14:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10414_trimmed_clipped_R2_paired.fq.gz 15:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10415_trimmed_clipped_R1_paired.fq.gz 16:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10415_trimmed_clipped_R2_paired.fq.gz 17:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10416_trimmed_clipped_R1_paired.fq.gz 18:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10416_trimmed_clipped_R2_paired.fq.gz 19:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10417_trimmed_clipped_R1_paired.fq.gz 20:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10417_trimmed_clipped_R2_paired.fq.gz 21:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10418_trimmed_clipped_R1_paired.fq.gz 22:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10418_trimmed_clipped_R2_paired.fq.gz 23:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10419_trimmed_clipped_R1_paired.fq.gz 24:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10419_trimmed_clipped_R2_paired.fq.gz 25:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10420_trimmed_clipped_R1_paired.fq.gz 26:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10420_trimmed_clipped_R2_paired.fq.gz 27:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10421_trimmed_clipped_R1_paired.fq.gz 28:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10421_trimmed_clipped_R2_paired.fq.gz 29:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10422_trimmed_clipped_R1_paired.fq.gz 30:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10422_trimmed_clipped_R2_paired.fq.gz 31:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10423_trimmed_clipped_R1_paired.fq.gz 32:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10423_trimmed_clipped_R2_paired.fq.gz 33:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10424_trimmed_clipped_R1_paired.fq.gz 34:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10424_trimmed_clipped_R2_paired.fq.gz 35:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10425_trimmed_clipped_R1_paired.fq.gz 36:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10425_trimmed_clipped_R2_paired.fq.gz 37:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10426_trimmed_clipped_R1_paired.fq.gz 38:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10426_trimmed_clipped_R2_paired.fq.gz 39:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10427_trimmed_clipped_R1_paired.fq.gz 40:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10427_trimmed_clipped_R2_paired.fq.gz 41:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10428_trimmed_clipped_R1_paired.fq.gz 42:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10428_trimmed_clipped_R2_paired.fq.gz 43:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10429_trimmed_clipped_R1_paired.fq.gz 44:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10429_trimmed_clipped_R2_paired.fq.gz 45:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10430_trimmed_clipped_R1_paired.fq.gz 46:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10430_trimmed_clipped_R2_paired.fq.gz 47:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10431_trimmed_clipped_R1_paired.fq.gz 48:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10431_trimmed_clipped_R2_paired.fq.gz 49:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10432_trimmed_clipped_R1_paired.fq.gz 50:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10432_trimmed_clipped_R2_paired.fq.gz 51:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10433_trimmed_clipped_R1_paired.fq.gz 52:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10433_trimmed_clipped_R2_paired.fq.gz 53:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10434_trimmed_clipped_R1_paired.fq.gz 54:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10434_trimmed_clipped_R2_paired.fq.gz 55:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10435_trimmed_clipped_R1_paired.fq.gz 56:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10435_trimmed_clipped_R2_paired.fq.gz 57:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10436_trimmed_clipped_R1_paired.fq.gz 58:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10436_trimmed_clipped_R2_paired.fq.gz 59:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10437_trimmed_clipped_R1_paired.fq.gz 60:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10437_trimmed_clipped_R2_paired.fq.gz 61:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10438_trimmed_clipped_R1_paired.fq.gz 62:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10438_trimmed_clipped_R2_paired.fq.gz 63:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10439_trimmed_clipped_R1_paired.fq.gz 64:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10439_trimmed_clipped_R2_paired.fq.gz 65:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10440_trimmed_clipped_R1_paired.fq.gz 66:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10440_trimmed_clipped_R2_paired.fq.gz 67:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10441_trimmed_clipped_R1_paired.fq.gz 68:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10441_trimmed_clipped_R2_paired.fq.gz 69:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10442_trimmed_clipped_R1_paired.fq.gz 70:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10442_trimmed_clipped_R2_paired.fq.gz 71:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10443_trimmed_clipped_R1_paired.fq.gz 72:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10443_trimmed_clipped_R2_paired.fq.gz 73:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10444_trimmed_clipped_R1_paired.fq.gz 74:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10444_trimmed_clipped_R2_paired.fq.gz 75:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10445_trimmed_clipped_R1_paired.fq.gz 76:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10445_trimmed_clipped_R2_paired.fq.gz 77:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10446_trimmed_clipped_R1_paired.fq.gz 78:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10446_trimmed_clipped_R2_paired.fq.gz 79:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10447_trimmed_clipped_R1_paired.fq.gz 80:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10447_trimmed_clipped_R2_paired.fq.gz 81:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10448_trimmed_clipped_R1_paired.fq.gz 82:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10448_trimmed_clipped_R2_paired.fq.gz 83:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10449_trimmed_clipped_R1_paired.fq.gz 84:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10449_trimmed_clipped_R2_paired.fq.gz 85:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10450_trimmed_clipped_R1_paired.fq.gz 86:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10450_trimmed_clipped_R2_paired.fq.gz 87:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10451_trimmed_clipped_R1_paired.fq.gz 88:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10451_trimmed_clipped_R2_paired.fq.gz 89:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10452_trimmed_clipped_R1_paired.fq.gz 90:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10452_trimmed_clipped_R2_paired.fq.gz 91:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10453_trimmed_clipped_R1_paired.fq.gz 92:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10453_trimmed_clipped_R2_paired.fq.gz 93:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10454_trimmed_clipped_R1_paired.fq.gz 94:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10454_trimmed_clipped_R2_paired.fq.gz 95:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10455_trimmed_clipped_R1_paired.fq.gz 96:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10455_trimmed_clipped_R2_paired.fq.gz 97:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10458_trimmed_clipped_R1_paired.fq.gz 98:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10458_trimmed_clipped_R2_paired.fq.gz 99:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10459_trimmed_clipped_R1_paired.fq.gz 100:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10459_trimmed_clipped_R2_paired.fq.gz 101:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10460_trimmed_clipped_R1_paired.fq.gz 102:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10460_trimmed_clipped_R2_paired.fq.gz 103:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10461_trimmed_clipped_R1_paired.fq.gz 104:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10461_trimmed_clipped_R2_paired.fq.gz 105:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10462_trimmed_clipped_R1_paired.fq.gz 106:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10462_trimmed_clipped_R2_paired.fq.gz 107:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10463_trimmed_clipped_R1_paired.fq.gz 108:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10463_trimmed_clipped_R2_paired.fq.gz 109:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10464_trimmed_clipped_R1_paired.fq.gz 110:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10464_trimmed_clipped_R2_paired.fq.gz 111:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10465_trimmed_clipped_R1_paired.fq.gz 112:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10465_trimmed_clipped_R2_paired.fq.gz 113:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10466_trimmed_clipped_R1_paired.fq.gz 114:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10466_trimmed_clipped_R2_paired.fq.gz 115:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10467_trimmed_clipped_R1_paired.fq.gz 116:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10467_trimmed_clipped_R2_paired.fq.gz 117:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10468_trimmed_clipped_R1_paired.fq.gz 118:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10468_trimmed_clipped_R2_paired.fq.gz 119:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10469_trimmed_clipped_R1_paired.fq.gz 120:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10469_trimmed_clipped_R2_paired.fq.gz 121:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10470_trimmed_clipped_R1_paired.fq.gz 122:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10470_trimmed_clipped_R2_paired.fq.gz 123:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10471_trimmed_clipped_R1_paired.fq.gz 124:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10471_trimmed_clipped_R2_paired.fq.gz 125:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10472_trimmed_clipped_R1_paired.fq.gz 126:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10472_trimmed_clipped_R2_paired.fq.gz 127:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10473_trimmed_clipped_R1_paired.fq.gz 128:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10473_trimmed_clipped_R2_paired.fq.gz 129:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10474_trimmed_clipped_R1_paired.fq.gz 130:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10474_trimmed_clipped_R2_paired.fq.gz 131:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10475_trimmed_clipped_R1_paired.fq.gz 132:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10475_trimmed_clipped_R2_paired.fq.gz 133:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10476_trimmed_clipped_R1_paired.fq.gz 134:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10476_trimmed_clipped_R2_paired.fq.gz 135:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10477_trimmed_clipped_R1_paired.fq.gz 136:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10477_trimmed_clipped_R2_paired.fq.gz 137:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10478_trimmed_clipped_R1_paired.fq.gz 138:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10478_trimmed_clipped_R2_paired.fq.gz 139:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10479_trimmed_clipped_R1_paired.fq.gz 140:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10479_trimmed_clipped_R2_paired.fq.gz 141:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10480_trimmed_clipped_R1_paired.fq.gz 142:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10480_trimmed_clipped_R2_paired.fq.gz 143:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10481_trimmed_clipped_R1_paired.fq.gz 144:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10481_trimmed_clipped_R2_paired.fq.gz 145:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10482_trimmed_clipped_R1_paired.fq.gz 146:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10482_trimmed_clipped_R2_paired.fq.gz 147:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10483_trimmed_clipped_R1_paired.fq.gz 148:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10483_trimmed_clipped_R2_paired.fq.gz 149:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10484_trimmed_clipped_R1_paired.fq.gz 150:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10484_trimmed_clipped_R2_paired.fq.gz 151:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10485_trimmed_clipped_R1_paired.fq.gz 152:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10485_trimmed_clipped_R2_paired.fq.gz 153:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10486_trimmed_clipped_R1_paired.fq.gz 154:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10486_trimmed_clipped_R2_paired.fq.gz 155:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10487_trimmed_clipped_R1_paired.fq.gz 156:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10487_trimmed_clipped_R2_paired.fq.gz 157:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10488_trimmed_clipped_R1_paired.fq.gz 158:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10488_trimmed_clipped_R2_paired.fq.gz 159:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10489_trimmed_clipped_R1_paired.fq.gz 160:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10489_trimmed_clipped_R2_paired.fq.gz 161:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10490_trimmed_clipped_R1_paired.fq.gz 162:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10490_trimmed_clipped_R2_paired.fq.gz 163:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10491_trimmed_clipped_R1_paired.fq.gz 164:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10491_trimmed_clipped_R2_paired.fq.gz 165:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10492_trimmed_clipped_R1_paired.fq.gz 166:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10492_trimmed_clipped_R2_paired.fq.gz 167:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10493_trimmed_clipped_R1_paired.fq.gz 168:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10493_trimmed_clipped_R2_paired.fq.gz 169:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10494_trimmed_clipped_R1_paired.fq.gz 170:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10494_trimmed_clipped_R2_paired.fq.gz 171:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10495_trimmed_clipped_R1_paired.fq.gz 172:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10495_trimmed_clipped_R2_paired.fq.gz 173:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10496_trimmed_clipped_R1_paired.fq.gz 174:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10496_trimmed_clipped_R2_paired.fq.gz 175:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10497_trimmed_clipped_R1_paired.fq.gz 176:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10497_trimmed_clipped_R2_paired.fq.gz 177:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10498_trimmed_clipped_R1_paired.fq.gz 178:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10498_trimmed_clipped_R2_paired.fq.gz 179:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10499_trimmed_clipped_R1_paired.fq.gz 180:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10499_trimmed_clipped_R2_paired.fq.gz 181:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10500_trimmed_clipped_R1_paired.fq.gz 182:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10500_trimmed_clipped_R2_paired.fq.gz 183:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10502_trimmed_clipped_R1_paired.fq.gz 184:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10502_trimmed_clipped_R2_paired.fq.gz 185:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10718_trimmed_clipped_R1_paired.fq.gz 186:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10718_trimmed_clipped_R2_paired.fq.gz 187:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10719_trimmed_clipped_R1_paired.fq.gz 188:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10719_trimmed_clipped_R2_paired.fq.gz 189:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10720_trimmed_clipped_R1_paired.fq.gz 190:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10720_trimmed_clipped_R2_paired.fq.gz 191:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10721_trimmed_clipped_R1_paired.fq.gz 192:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10721_trimmed_clipped_R2_paired.fq.gz 193:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10723_trimmed_clipped_R1_paired.fq.gz 194:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10723_trimmed_clipped_R2_paired.fq.gz 195:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10724_trimmed_clipped_R1_paired.fq.gz 196:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10724_trimmed_clipped_R2_paired.fq.gz 197:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10725_trimmed_clipped_R1_paired.fq.gz 198:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10725_trimmed_clipped_R2_paired.fq.gz 199:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10728_trimmed_clipped_R1_paired.fq.gz 200:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10728_trimmed_clipped_R2_paired.fq.gz 201:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10729_trimmed_clipped_R1_paired.fq.gz 202:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10729_trimmed_clipped_R2_paired.fq.gz 203:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10730_trimmed_clipped_R1_paired.fq.gz 204:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10730_trimmed_clipped_R2_paired.fq.gz 205:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10731_trimmed_clipped_R1_paired.fq.gz 206:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10731_trimmed_clipped_R2_paired.fq.gz 207:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10732_trimmed_clipped_R1_paired.fq.gz 208:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10732_trimmed_clipped_R2_paired.fq.gz 209:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10733_trimmed_clipped_R1_paired.fq.gz 210:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10733_trimmed_clipped_R2_paired.fq.gz 211:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10734_trimmed_clipped_R1_paired.fq.gz 212:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10734_trimmed_clipped_R2_paired.fq.gz 213:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10735_trimmed_clipped_R1_paired.fq.gz 214:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10735_trimmed_clipped_R2_paired.fq.gz 215:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10737_trimmed_clipped_R1_paired.fq.gz 216:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10737_trimmed_clipped_R2_paired.fq.gz 217:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10738_trimmed_clipped_R1_paired.fq.gz 218:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10738_trimmed_clipped_R2_paired.fq.gz 219:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10739_trimmed_clipped_R1_paired.fq.gz 220:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10739_trimmed_clipped_R2_paired.fq.gz 221:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10740_trimmed_clipped_R1_paired.fq.gz 222:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10740_trimmed_clipped_R2_paired.fq.gz 223:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10742_trimmed_clipped_R1_paired.fq.gz 224:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10742_trimmed_clipped_R2_paired.fq.gz 225:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10743_trimmed_clipped_R1_paired.fq.gz 226:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10743_trimmed_clipped_R2_paired.fq.gz 227:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10744_trimmed_clipped_R1_paired.fq.gz 228:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10744_trimmed_clipped_R2_paired.fq.gz 229:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10746_trimmed_clipped_R1_paired.fq.gz 230:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10746_trimmed_clipped_R2_paired.fq.gz 231:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10747_trimmed_clipped_R1_paired.fq.gz 232:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10747_trimmed_clipped_R2_paired.fq.gz 233:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10749_trimmed_clipped_R1_paired.fq.gz 234:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10749_trimmed_clipped_R2_paired.fq.gz 235:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10752_trimmed_clipped_R1_paired.fq.gz 236:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10752_trimmed_clipped_R2_paired.fq.gz 237:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10753_trimmed_clipped_R1_paired.fq.gz 238:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10753_trimmed_clipped_R2_paired.fq.gz 239:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10755_trimmed_clipped_R1_paired.fq.gz 240:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10755_trimmed_clipped_R2_paired.fq.gz 241:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10757_trimmed_clipped_R1_paired.fq.gz 242:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10757_trimmed_clipped_R2_paired.fq.gz 243:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10758_trimmed_clipped_R1_paired.fq.gz 244:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10758_trimmed_clipped_R2_paired.fq.gz 245:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10759_trimmed_clipped_R1_paired.fq.gz 246:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10759_trimmed_clipped_R2_paired.fq.gz 247:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10761_trimmed_clipped_R1_paired.fq.gz 248:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10761_trimmed_clipped_R2_paired.fq.gz 249:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10763_trimmed_clipped_R1_paired.fq.gz 250:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10763_trimmed_clipped_R2_paired.fq.gz 251:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10764_trimmed_clipped_R1_paired.fq.gz 252:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10764_trimmed_clipped_R2_paired.fq.gz 253:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10818_trimmed_clipped_R1_paired.fq.gz 254:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10818_trimmed_clipped_R2_paired.fq.gz 255:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10820_trimmed_clipped_R1_paired.fq.gz 256:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10820_trimmed_clipped_R2_paired.fq.gz 257:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10821_trimmed_clipped_R1_paired.fq.gz 258:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10821_trimmed_clipped_R2_paired.fq.gz 259:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10823_trimmed_clipped_R1_paired.fq.gz 260:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10823_trimmed_clipped_R2_paired.fq.gz 261:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10824_trimmed_clipped_R1_paired.fq.gz 262:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10824_trimmed_clipped_R2_paired.fq.gz 263:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10825_trimmed_clipped_R1_paired.fq.gz 264:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10825_trimmed_clipped_R2_paired.fq.gz 265:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10827_trimmed_clipped_R1_paired.fq.gz 266:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10827_trimmed_clipped_R2_paired.fq.gz 267:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10828_trimmed_clipped_R1_paired.fq.gz 268:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10828_trimmed_clipped_R2_paired.fq.gz 269:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10832_trimmed_clipped_R1_paired.fq.gz 270:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10832_trimmed_clipped_R2_paired.fq.gz 271:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10833_trimmed_clipped_R1_paired.fq.gz 272:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10833_trimmed_clipped_R2_paired.fq.gz 273:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10834_trimmed_clipped_R1_paired.fq.gz 274:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10834_trimmed_clipped_R2_paired.fq.gz 275:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10836_trimmed_clipped_R1_paired.fq.gz 276:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10836_trimmed_clipped_R2_paired.fq.gz 277:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10837_trimmed_clipped_R1_paired.fq.gz 278:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10837_trimmed_clipped_R2_paired.fq.gz 279:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10839_trimmed_clipped_R1_paired.fq.gz 280:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10839_trimmed_clipped_R2_paired.fq.gz 281:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10843_trimmed_clipped_R1_paired.fq.gz 282:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10843_trimmed_clipped_R2_paired.fq.gz 283:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10844_trimmed_clipped_R1_paired.fq.gz 284:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10844_trimmed_clipped_R2_paired.fq.gz 285:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10846_trimmed_clipped_R1_paired.fq.gz 286:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10846_trimmed_clipped_R2_paired.fq.gz 287:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10847_trimmed_clipped_R1_paired.fq.gz 288:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10847_trimmed_clipped_R2_paired.fq.gz 289:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10849_trimmed_clipped_R1_paired.fq.gz 290:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10849_trimmed_clipped_R2_paired.fq.gz 291:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10850_trimmed_clipped_R1_paired.fq.gz 292:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10850_trimmed_clipped_R2_paired.fq.gz 293:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10851_trimmed_clipped_R1_paired.fq.gz 294:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10851_trimmed_clipped_R2_paired.fq.gz 295:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10852_trimmed_clipped_R1_paired.fq.gz 296:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10852_trimmed_clipped_R2_paired.fq.gz 297:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10853_trimmed_clipped_R1_paired.fq.gz 298:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10853_trimmed_clipped_R2_paired.fq.gz 299:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10854_trimmed_clipped_R1_paired.fq.gz 300:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10854_trimmed_clipped_R2_paired.fq.gz 301:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10855_trimmed_clipped_R1_paired.fq.gz 302:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10855_trimmed_clipped_R2_paired.fq.gz 303:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10856_trimmed_clipped_R1_paired.fq.gz 304:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10856_trimmed_clipped_R2_paired.fq.gz 305:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10857_trimmed_clipped_R1_paired.fq.gz 306:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10857_trimmed_clipped_R2_paired.fq.gz 307:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10858_trimmed_clipped_R1_paired.fq.gz 308:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10858_trimmed_clipped_R2_paired.fq.gz 309:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10859_trimmed_clipped_R1_paired.fq.gz 310:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10859_trimmed_clipped_R2_paired.fq.gz 311:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10860_trimmed_clipped_R1_paired.fq.gz 312:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10860_trimmed_clipped_R2_paired.fq.gz 313:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10861_trimmed_clipped_R1_paired.fq.gz 314:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10861_trimmed_clipped_R2_paired.fq.gz 315:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10862_trimmed_clipped_R1_paired.fq.gz 316:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10862_trimmed_clipped_R2_paired.fq.gz 317:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10863_trimmed_clipped_R1_paired.fq.gz 318:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10863_trimmed_clipped_R2_paired.fq.gz 319:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10864_trimmed_clipped_R1_paired.fq.gz 320:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10864_trimmed_clipped_R2_paired.fq.gz 321:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10865_trimmed_clipped_R1_paired.fq.gz 322:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10865_trimmed_clipped_R2_paired.fq.gz 323:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10866_trimmed_clipped_R1_paired.fq.gz 324:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10866_trimmed_clipped_R2_paired.fq.gz 325:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10867_trimmed_clipped_R1_paired.fq.gz 326:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10867_trimmed_clipped_R2_paired.fq.gz 327:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10868_trimmed_clipped_R1_paired.fq.gz 328:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10868_trimmed_clipped_R2_paired.fq.gz 329:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10915_trimmed_clipped_R1_paired.fq.gz 330:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10915_trimmed_clipped_R2_paired.fq.gz 331:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10916_trimmed_clipped_R1_paired.fq.gz 332:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10916_trimmed_clipped_R2_paired.fq.gz 333:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10917_trimmed_clipped_R1_paired.fq.gz 334:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10917_trimmed_clipped_R2_paired.fq.gz 335:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10918_trimmed_clipped_R1_paired.fq.gz 336:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10918_trimmed_clipped_R2_paired.fq.gz 337:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10920_trimmed_clipped_R1_paired.fq.gz 338:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10920_trimmed_clipped_R2_paired.fq.gz 339:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10921_trimmed_clipped_R1_paired.fq.gz 340:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10921_trimmed_clipped_R2_paired.fq.gz 341:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10922_trimmed_clipped_R1_paired.fq.gz 342:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10922_trimmed_clipped_R2_paired.fq.gz 343:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10923_trimmed_clipped_R1_paired.fq.gz 344:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10923_trimmed_clipped_R2_paired.fq.gz 345:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10928_trimmed_clipped_R1_paired.fq.gz 346:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10928_trimmed_clipped_R2_paired.fq.gz 347:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10930_trimmed_clipped_R1_paired.fq.gz 348:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG10930_trimmed_clipped_R2_paired.fq.gz 349:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1927_trimmed_clipped_R1_paired.fq.gz 350:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1927_trimmed_clipped_R2_paired.fq.gz 351:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1928_trimmed_clipped_R1_paired.fq.gz 352:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1928_trimmed_clipped_R2_paired.fq.gz 353:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1929_trimmed_clipped_R1_paired.fq.gz 354:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1929_trimmed_clipped_R2_paired.fq.gz 355:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1930_trimmed_clipped_R1_paired.fq.gz 356:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1930_trimmed_clipped_R2_paired.fq.gz 357:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1931_trimmed_clipped_R1_paired.fq.gz 358:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1931_trimmed_clipped_R2_paired.fq.gz 359:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1932_trimmed_clipped_R1_paired.fq.gz 360:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1932_trimmed_clipped_R2_paired.fq.gz 361:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1936_trimmed_clipped_R1_paired.fq.gz 362:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1936_trimmed_clipped_R2_paired.fq.gz 363:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1937_trimmed_clipped_R1_paired.fq.gz 364:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1937_trimmed_clipped_R2_paired.fq.gz 365:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1938_trimmed_clipped_R1_paired.fq.gz 366:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1938_trimmed_clipped_R2_paired.fq.gz 367:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1941_trimmed_clipped_R1_paired.fq.gz 368:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1941_trimmed_clipped_R2_paired.fq.gz 369:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1942_trimmed_clipped_R1_paired.fq.gz 370:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1942_trimmed_clipped_R2_paired.fq.gz 371:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1943_trimmed_clipped_R1_paired.fq.gz 372:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1943_trimmed_clipped_R2_paired.fq.gz 373:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1944_trimmed_clipped_R1_paired.fq.gz 374:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1944_trimmed_clipped_R2_paired.fq.gz 375:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1945_trimmed_clipped_R1_paired.fq.gz 376:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1945_trimmed_clipped_R2_paired.fq.gz 377:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1946_trimmed_clipped_R1_paired.fq.gz 378:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1946_trimmed_clipped_R2_paired.fq.gz 379:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1947_trimmed_clipped_R1_paired.fq.gz 380:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1947_trimmed_clipped_R2_paired.fq.gz 381:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1948_trimmed_clipped_R1_paired.fq.gz 382:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1948_trimmed_clipped_R2_paired.fq.gz 383:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1950_trimmed_clipped_R1_paired.fq.gz 384:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1950_trimmed_clipped_R2_paired.fq.gz 385:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1952_trimmed_clipped_R1_paired.fq.gz 386:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1952_trimmed_clipped_R2_paired.fq.gz 387:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1953_trimmed_clipped_R1_paired.fq.gz 388:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1953_trimmed_clipped_R2_paired.fq.gz 389:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1955_trimmed_clipped_R1_paired.fq.gz 390:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1955_trimmed_clipped_R2_paired.fq.gz 391:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1956_trimmed_clipped_R1_paired.fq.gz 392:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1956_trimmed_clipped_R2_paired.fq.gz 393:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1957_trimmed_clipped_R1_paired.fq.gz 394:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1957_trimmed_clipped_R2_paired.fq.gz 395:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1958_trimmed_clipped_R1_paired.fq.gz 396:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1958_trimmed_clipped_R2_paired.fq.gz 397:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1961_trimmed_clipped_R1_paired.fq.gz 398:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1961_trimmed_clipped_R2_paired.fq.gz 399:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1962_trimmed_clipped_R1_paired.fq.gz 400:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1962_trimmed_clipped_R2_paired.fq.gz 401:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1963_trimmed_clipped_R1_paired.fq.gz 402:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1963_trimmed_clipped_R2_paired.fq.gz 403:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1965_trimmed_clipped_R1_paired.fq.gz 404:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1965_trimmed_clipped_R2_paired.fq.gz 405:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1968_trimmed_clipped_R1_paired.fq.gz 406:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1968_trimmed_clipped_R2_paired.fq.gz 407:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1969_trimmed_clipped_R1_paired.fq.gz 408:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1969_trimmed_clipped_R2_paired.fq.gz 409:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1970_trimmed_clipped_R1_paired.fq.gz 410:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1970_trimmed_clipped_R2_paired.fq.gz 411:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1971_trimmed_clipped_R1_paired.fq.gz 412:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1971_trimmed_clipped_R2_paired.fq.gz 413:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1972_trimmed_clipped_R1_paired.fq.gz 414:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1972_trimmed_clipped_R2_paired.fq.gz 415:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1974_trimmed_clipped_R1_paired.fq.gz 416:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1974_trimmed_clipped_R2_paired.fq.gz 417:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1975_trimmed_clipped_R1_paired.fq.gz 418:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1975_trimmed_clipped_R2_paired.fq.gz 419:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1976_trimmed_clipped_R1_paired.fq.gz 420:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1976_trimmed_clipped_R2_paired.fq.gz 421:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1977_trimmed_clipped_R1_paired.fq.gz 422:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1977_trimmed_clipped_R2_paired.fq.gz 423:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19808_trimmed_clipped_R1_paired.fq.gz 424:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19808_trimmed_clipped_R2_paired.fq.gz 425:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19810_trimmed_clipped_R1_paired.fq.gz 426:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19810_trimmed_clipped_R2_paired.fq.gz 427:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1981_trimmed_clipped_R1_paired.fq.gz 428:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1981_trimmed_clipped_R2_paired.fq.gz 429:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19811_trimmed_clipped_R1_paired.fq.gz 430:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19811_trimmed_clipped_R2_paired.fq.gz 431:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19812_trimmed_clipped_R1_paired.fq.gz 432:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19812_trimmed_clipped_R2_paired.fq.gz 433:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19813_trimmed_clipped_R1_paired.fq.gz 434:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19813_trimmed_clipped_R2_paired.fq.gz 435:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19814_trimmed_clipped_R1_paired.fq.gz 436:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19814_trimmed_clipped_R2_paired.fq.gz 437:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19816_trimmed_clipped_R1_paired.fq.gz 438:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19816_trimmed_clipped_R2_paired.fq.gz 439:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19817_trimmed_clipped_R1_paired.fq.gz 440:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19817_trimmed_clipped_R2_paired.fq.gz 441:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19819_trimmed_clipped_R1_paired.fq.gz 442:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19819_trimmed_clipped_R2_paired.fq.gz 443:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19820_trimmed_clipped_R1_paired.fq.gz 444:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19820_trimmed_clipped_R2_paired.fq.gz 445:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1982_trimmed_clipped_R1_paired.fq.gz 446:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1982_trimmed_clipped_R2_paired.fq.gz 447:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19821_trimmed_clipped_R1_paired.fq.gz 448:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19821_trimmed_clipped_R2_paired.fq.gz 449:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19822_trimmed_clipped_R1_paired.fq.gz 450:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19822_trimmed_clipped_R2_paired.fq.gz 451:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19823_trimmed_clipped_R1_paired.fq.gz 452:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19823_trimmed_clipped_R2_paired.fq.gz 453:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19824_trimmed_clipped_R1_paired.fq.gz 454:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19824_trimmed_clipped_R2_paired.fq.gz 455:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19826_trimmed_clipped_R1_paired.fq.gz 456:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19826_trimmed_clipped_R2_paired.fq.gz 457:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19827_trimmed_clipped_R1_paired.fq.gz 458:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19827_trimmed_clipped_R2_paired.fq.gz 459:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19828_trimmed_clipped_R1_paired.fq.gz 460:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19828_trimmed_clipped_R2_paired.fq.gz 461:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19829_trimmed_clipped_R1_paired.fq.gz 462:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19829_trimmed_clipped_R2_paired.fq.gz 463:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19830_trimmed_clipped_R1_paired.fq.gz 464:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19830_trimmed_clipped_R2_paired.fq.gz 465:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19831_trimmed_clipped_R1_paired.fq.gz 466:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19831_trimmed_clipped_R2_paired.fq.gz 467:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19832_trimmed_clipped_R1_paired.fq.gz 468:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19832_trimmed_clipped_R2_paired.fq.gz 469:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19833_trimmed_clipped_R1_paired.fq.gz 470:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19833_trimmed_clipped_R2_paired.fq.gz 471:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19834_trimmed_clipped_R1_paired.fq.gz 472:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19834_trimmed_clipped_R2_paired.fq.gz 473:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19835_trimmed_clipped_R1_paired.fq.gz 474:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19835_trimmed_clipped_R2_paired.fq.gz 475:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19836_trimmed_clipped_R1_paired.fq.gz 476:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19836_trimmed_clipped_R2_paired.fq.gz 477:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19839_trimmed_clipped_R1_paired.fq.gz 478:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19839_trimmed_clipped_R2_paired.fq.gz 479:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19840_trimmed_clipped_R1_paired.fq.gz 480:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19840_trimmed_clipped_R2_paired.fq.gz 481:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19841_trimmed_clipped_R1_paired.fq.gz 482:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19841_trimmed_clipped_R2_paired.fq.gz 483:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19842_trimmed_clipped_R1_paired.fq.gz 484:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19842_trimmed_clipped_R2_paired.fq.gz 485:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19843_trimmed_clipped_R1_paired.fq.gz 486:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19843_trimmed_clipped_R2_paired.fq.gz 487:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19848_trimmed_clipped_R1_paired.fq.gz 488:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19848_trimmed_clipped_R2_paired.fq.gz 489:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19849_trimmed_clipped_R1_paired.fq.gz 490:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19849_trimmed_clipped_R2_paired.fq.gz 491:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19850_trimmed_clipped_R1_paired.fq.gz 492:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19850_trimmed_clipped_R2_paired.fq.gz 493:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19851_trimmed_clipped_R1_paired.fq.gz 494:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19851_trimmed_clipped_R2_paired.fq.gz 495:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19852_trimmed_clipped_R1_paired.fq.gz 496:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19852_trimmed_clipped_R2_paired.fq.gz 497:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19853_trimmed_clipped_R1_paired.fq.gz 498:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19853_trimmed_clipped_R2_paired.fq.gz 499:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19854_trimmed_clipped_R1_paired.fq.gz 500:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19854_trimmed_clipped_R2_paired.fq.gz 501:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19856_trimmed_clipped_R1_paired.fq.gz 502:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19856_trimmed_clipped_R2_paired.fq.gz 503:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19857_trimmed_clipped_R1_paired.fq.gz 504:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19857_trimmed_clipped_R2_paired.fq.gz 505:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19861_trimmed_clipped_R1_paired.fq.gz 506:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19861_trimmed_clipped_R2_paired.fq.gz 507:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19862_trimmed_clipped_R1_paired.fq.gz 508:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19862_trimmed_clipped_R2_paired.fq.gz 509:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19865_trimmed_clipped_R1_paired.fq.gz 510:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19865_trimmed_clipped_R2_paired.fq.gz 511:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19866_trimmed_clipped_R1_paired.fq.gz 512:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19866_trimmed_clipped_R2_paired.fq.gz 513:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19867_trimmed_clipped_R1_paired.fq.gz 514:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19867_trimmed_clipped_R2_paired.fq.gz 515:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19869_trimmed_clipped_R1_paired.fq.gz 516:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG19869_trimmed_clipped_R2_paired.fq.gz 517:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1987_trimmed_clipped_R1_paired.fq.gz 518:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1987_trimmed_clipped_R2_paired.fq.gz 519:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1988_trimmed_clipped_R1_paired.fq.gz 520:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1988_trimmed_clipped_R2_paired.fq.gz 521:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1990_trimmed_clipped_R1_paired.fq.gz 522:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1990_trimmed_clipped_R2_paired.fq.gz 523:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1991_trimmed_clipped_R1_paired.fq.gz 524:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1991_trimmed_clipped_R2_paired.fq.gz 525:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1992_trimmed_clipped_R1_paired.fq.gz 526:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1992_trimmed_clipped_R2_paired.fq.gz 527:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1993_trimmed_clipped_R1_paired.fq.gz 528:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1993_trimmed_clipped_R2_paired.fq.gz 529:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1994_trimmed_clipped_R1_paired.fq.gz 530:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1994_trimmed_clipped_R2_paired.fq.gz 531:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1996_trimmed_clipped_R1_paired.fq.gz 532:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1996_trimmed_clipped_R2_paired.fq.gz 533:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1997_trimmed_clipped_R1_paired.fq.gz 534:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1997_trimmed_clipped_R2_paired.fq.gz 535:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1999_trimmed_clipped_R1_paired.fq.gz 536:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG1999_trimmed_clipped_R2_paired.fq.gz 537:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2004_trimmed_clipped_R1_paired.fq.gz 538:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2004_trimmed_clipped_R2_paired.fq.gz 539:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2005_trimmed_clipped_R1_paired.fq.gz 540:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2005_trimmed_clipped_R2_paired.fq.gz 541:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2009_trimmed_clipped_R1_paired.fq.gz 542:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2009_trimmed_clipped_R2_paired.fq.gz 543:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2010_trimmed_clipped_R1_paired.fq.gz 544:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2010_trimmed_clipped_R2_paired.fq.gz 545:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2012_trimmed_clipped_R1_paired.fq.gz 546:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2012_trimmed_clipped_R2_paired.fq.gz 547:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2013_trimmed_clipped_R1_paired.fq.gz 548:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2013_trimmed_clipped_R2_paired.fq.gz 549:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2014_trimmed_clipped_R1_paired.fq.gz 550:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2014_trimmed_clipped_R2_paired.fq.gz 551:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2017_trimmed_clipped_R1_paired.fq.gz 552:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2017_trimmed_clipped_R2_paired.fq.gz 553:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2018_trimmed_clipped_R1_paired.fq.gz 554:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2018_trimmed_clipped_R2_paired.fq.gz 555:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2020_trimmed_clipped_R1_paired.fq.gz 556:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2020_trimmed_clipped_R2_paired.fq.gz 557:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2021_trimmed_clipped_R1_paired.fq.gz 558:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2021_trimmed_clipped_R2_paired.fq.gz 559:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2022_trimmed_clipped_R1_paired.fq.gz 560:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2022_trimmed_clipped_R2_paired.fq.gz 561:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2023_trimmed_clipped_R1_paired.fq.gz 562:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2023_trimmed_clipped_R2_paired.fq.gz 563:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2027_trimmed_clipped_R1_paired.fq.gz 564:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2027_trimmed_clipped_R2_paired.fq.gz 565:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2032_trimmed_clipped_R1_paired.fq.gz 566:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2032_trimmed_clipped_R2_paired.fq.gz 567:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2037_trimmed_clipped_R1_paired.fq.gz 568:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2037_trimmed_clipped_R2_paired.fq.gz 569:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2042_trimmed_clipped_R1_paired.fq.gz 570:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2042_trimmed_clipped_R2_paired.fq.gz 571:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2045_trimmed_clipped_R1_paired.fq.gz 572:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2045_trimmed_clipped_R2_paired.fq.gz 573:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2054_trimmed_clipped_R1_paired.fq.gz 574:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2054_trimmed_clipped_R2_paired.fq.gz 575:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2060_trimmed_clipped_R1_paired.fq.gz 576:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2060_trimmed_clipped_R2_paired.fq.gz 577:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2063_trimmed_clipped_R1_paired.fq.gz 578:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2063_trimmed_clipped_R2_paired.fq.gz 579:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2065_trimmed_clipped_R1_paired.fq.gz 580:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2065_trimmed_clipped_R2_paired.fq.gz 581:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2067_trimmed_clipped_R1_paired.fq.gz 582:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2067_trimmed_clipped_R2_paired.fq.gz 583:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2071_trimmed_clipped_R1_paired.fq.gz 584:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2071_trimmed_clipped_R2_paired.fq.gz 585:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2076_trimmed_clipped_R1_paired.fq.gz 586:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2076_trimmed_clipped_R2_paired.fq.gz 587:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2077_trimmed_clipped_R1_paired.fq.gz 588:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2077_trimmed_clipped_R2_paired.fq.gz 589:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2079_trimmed_clipped_R1_paired.fq.gz 590:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2079_trimmed_clipped_R2_paired.fq.gz 591:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2080_trimmed_clipped_R1_paired.fq.gz 592:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2080_trimmed_clipped_R2_paired.fq.gz 593:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2082_trimmed_clipped_R1_paired.fq.gz 594:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2082_trimmed_clipped_R2_paired.fq.gz 595:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2083_trimmed_clipped_R1_paired.fq.gz 596:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2083_trimmed_clipped_R2_paired.fq.gz 597:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2086_trimmed_clipped_R1_paired.fq.gz 598:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2086_trimmed_clipped_R2_paired.fq.gz 599:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2087_trimmed_clipped_R1_paired.fq.gz 600:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2087_trimmed_clipped_R2_paired.fq.gz 601:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2088_trimmed_clipped_R1_paired.fq.gz 602:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2088_trimmed_clipped_R2_paired.fq.gz 603:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2090_trimmed_clipped_R1_paired.fq.gz 604:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2090_trimmed_clipped_R2_paired.fq.gz 605:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2091_trimmed_clipped_R1_paired.fq.gz 606:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2091_trimmed_clipped_R2_paired.fq.gz 607:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2092_trimmed_clipped_R1_paired.fq.gz 608:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2092_trimmed_clipped_R2_paired.fq.gz 609:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2093_trimmed_clipped_R1_paired.fq.gz 610:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2093_trimmed_clipped_R2_paired.fq.gz 611:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2094_trimmed_clipped_R1_paired.fq.gz 612:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2094_trimmed_clipped_R2_paired.fq.gz 613:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2095_trimmed_clipped_R1_paired.fq.gz 614:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2095_trimmed_clipped_R2_paired.fq.gz 615:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2096_trimmed_clipped_R1_paired.fq.gz 616:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2096_trimmed_clipped_R2_paired.fq.gz 617:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2097_trimmed_clipped_R1_paired.fq.gz 618:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2097_trimmed_clipped_R2_paired.fq.gz 619:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2098_trimmed_clipped_R1_paired.fq.gz 620:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2098_trimmed_clipped_R2_paired.fq.gz 621:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2099_trimmed_clipped_R1_paired.fq.gz 622:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2099_trimmed_clipped_R2_paired.fq.gz 623:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2100_trimmed_clipped_R1_paired.fq.gz 624:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2100_trimmed_clipped_R2_paired.fq.gz 625:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2101_trimmed_clipped_R1_paired.fq.gz 626:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2101_trimmed_clipped_R2_paired.fq.gz 627:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2102_trimmed_clipped_R1_paired.fq.gz 628:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2102_trimmed_clipped_R2_paired.fq.gz 629:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2103_trimmed_clipped_R1_paired.fq.gz 630:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2103_trimmed_clipped_R2_paired.fq.gz 631:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2104_trimmed_clipped_R1_paired.fq.gz 632:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2104_trimmed_clipped_R2_paired.fq.gz 633:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2105_trimmed_clipped_R1_paired.fq.gz 634:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2105_trimmed_clipped_R2_paired.fq.gz 635:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2107_trimmed_clipped_R1_paired.fq.gz 636:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2107_trimmed_clipped_R2_paired.fq.gz 637:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2108_trimmed_clipped_R1_paired.fq.gz 638:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2108_trimmed_clipped_R2_paired.fq.gz 639:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2109_trimmed_clipped_R1_paired.fq.gz 640:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2109_trimmed_clipped_R2_paired.fq.gz 641:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2110_trimmed_clipped_R1_paired.fq.gz 642:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2110_trimmed_clipped_R2_paired.fq.gz 643:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2111_trimmed_clipped_R1_paired.fq.gz 644:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2111_trimmed_clipped_R2_paired.fq.gz 645:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2112_trimmed_clipped_R1_paired.fq.gz 646:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2112_trimmed_clipped_R2_paired.fq.gz 647:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2113_trimmed_clipped_R1_paired.fq.gz 648:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2113_trimmed_clipped_R2_paired.fq.gz 649:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2114_trimmed_clipped_R1_paired.fq.gz 650:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2114_trimmed_clipped_R2_paired.fq.gz 651:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2115_trimmed_clipped_R1_paired.fq.gz 652:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2115_trimmed_clipped_R2_paired.fq.gz 653:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2116_trimmed_clipped_R1_paired.fq.gz 654:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2116_trimmed_clipped_R2_paired.fq.gz 655:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2117_trimmed_clipped_R1_paired.fq.gz 656:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2117_trimmed_clipped_R2_paired.fq.gz 657:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2118_trimmed_clipped_R1_paired.fq.gz 658:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2118_trimmed_clipped_R2_paired.fq.gz 659:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2120_trimmed_clipped_R1_paired.fq.gz 660:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2120_trimmed_clipped_R2_paired.fq.gz 661:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2121_trimmed_clipped_R1_paired.fq.gz 662:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2121_trimmed_clipped_R2_paired.fq.gz 663:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2123_trimmed_clipped_R1_paired.fq.gz 664:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2123_trimmed_clipped_R2_paired.fq.gz 665:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2124_trimmed_clipped_R1_paired.fq.gz 666:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2124_trimmed_clipped_R2_paired.fq.gz 667:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2125_trimmed_clipped_R1_paired.fq.gz 668:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2125_trimmed_clipped_R2_paired.fq.gz 669:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2126_trimmed_clipped_R1_paired.fq.gz 670:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2126_trimmed_clipped_R2_paired.fq.gz 671:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2127_trimmed_clipped_R1_paired.fq.gz 672:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2127_trimmed_clipped_R2_paired.fq.gz 673:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2129_trimmed_clipped_R1_paired.fq.gz 674:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2129_trimmed_clipped_R2_paired.fq.gz 675:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2132_trimmed_clipped_R1_paired.fq.gz 676:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2132_trimmed_clipped_R2_paired.fq.gz 677:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2133_trimmed_clipped_R1_paired.fq.gz 678:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2133_trimmed_clipped_R2_paired.fq.gz 679:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2134_trimmed_clipped_R1_paired.fq.gz 680:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2134_trimmed_clipped_R2_paired.fq.gz 681:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2135_trimmed_clipped_R1_paired.fq.gz 682:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2135_trimmed_clipped_R2_paired.fq.gz 683:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2136_trimmed_clipped_R1_paired.fq.gz 684:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2136_trimmed_clipped_R2_paired.fq.gz 685:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2137_trimmed_clipped_R1_paired.fq.gz 686:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2137_trimmed_clipped_R2_paired.fq.gz 687:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2138_trimmed_clipped_R1_paired.fq.gz 688:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2138_trimmed_clipped_R2_paired.fq.gz 689:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2139_trimmed_clipped_R1_paired.fq.gz 690:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2139_trimmed_clipped_R2_paired.fq.gz 691:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2140_trimmed_clipped_R1_paired.fq.gz 692:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2140_trimmed_clipped_R2_paired.fq.gz 693:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2141_trimmed_clipped_R1_paired.fq.gz 694:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2141_trimmed_clipped_R2_paired.fq.gz 695:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2142_trimmed_clipped_R1_paired.fq.gz 696:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2142_trimmed_clipped_R2_paired.fq.gz 697:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2143_trimmed_clipped_R1_paired.fq.gz 698:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2143_trimmed_clipped_R2_paired.fq.gz 699:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2144_trimmed_clipped_R1_paired.fq.gz 700:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2144_trimmed_clipped_R2_paired.fq.gz 701:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2145_trimmed_clipped_R1_paired.fq.gz 702:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2145_trimmed_clipped_R2_paired.fq.gz 703:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2146_trimmed_clipped_R1_paired.fq.gz 704:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2146_trimmed_clipped_R2_paired.fq.gz 705:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2147_trimmed_clipped_R1_paired.fq.gz 706:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2147_trimmed_clipped_R2_paired.fq.gz 707:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2149_trimmed_clipped_R1_paired.fq.gz 708:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2149_trimmed_clipped_R2_paired.fq.gz 709:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2150_trimmed_clipped_R1_paired.fq.gz 710:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2150_trimmed_clipped_R2_paired.fq.gz 711:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2151_trimmed_clipped_R1_paired.fq.gz 712:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2151_trimmed_clipped_R2_paired.fq.gz 713:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2152_trimmed_clipped_R1_paired.fq.gz 714:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2152_trimmed_clipped_R2_paired.fq.gz 715:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2153_trimmed_clipped_R1_paired.fq.gz 716:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2153_trimmed_clipped_R2_paired.fq.gz 717:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2154_trimmed_clipped_R1_paired.fq.gz 718:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2154_trimmed_clipped_R2_paired.fq.gz 719:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2155_trimmed_clipped_R1_paired.fq.gz 720:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2155_trimmed_clipped_R2_paired.fq.gz 721:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2156_trimmed_clipped_R1_paired.fq.gz 722:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2156_trimmed_clipped_R2_paired.fq.gz 723:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2157_trimmed_clipped_R1_paired.fq.gz 724:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2157_trimmed_clipped_R2_paired.fq.gz 725:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2158_trimmed_clipped_R1_paired.fq.gz 726:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2158_trimmed_clipped_R2_paired.fq.gz 727:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2159_trimmed_clipped_R1_paired.fq.gz 728:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2159_trimmed_clipped_R2_paired.fq.gz 729:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2160_trimmed_clipped_R1_paired.fq.gz 730:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2160_trimmed_clipped_R2_paired.fq.gz 731:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2161_trimmed_clipped_R1_paired.fq.gz 732:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2161_trimmed_clipped_R2_paired.fq.gz 733:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2162_trimmed_clipped_R1_paired.fq.gz 734:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2162_trimmed_clipped_R2_paired.fq.gz 735:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2163_trimmed_clipped_R1_paired.fq.gz 736:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2163_trimmed_clipped_R2_paired.fq.gz 737:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2164_trimmed_clipped_R1_paired.fq.gz 738:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2164_trimmed_clipped_R2_paired.fq.gz 739:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2165_trimmed_clipped_R1_paired.fq.gz 740:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2165_trimmed_clipped_R2_paired.fq.gz 741:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2166_trimmed_clipped_R1_paired.fq.gz 742:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2166_trimmed_clipped_R2_paired.fq.gz 743:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2167_trimmed_clipped_R1_paired.fq.gz 744:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2167_trimmed_clipped_R2_paired.fq.gz 745:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2168_trimmed_clipped_R1_paired.fq.gz 746:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2168_trimmed_clipped_R2_paired.fq.gz 747:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2169_trimmed_clipped_R1_paired.fq.gz 748:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2169_trimmed_clipped_R2_paired.fq.gz 749:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2170_trimmed_clipped_R1_paired.fq.gz 750:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2170_trimmed_clipped_R2_paired.fq.gz 751:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2171_trimmed_clipped_R1_paired.fq.gz 752:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2171_trimmed_clipped_R2_paired.fq.gz 753:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2172_trimmed_clipped_R1_paired.fq.gz 754:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2172_trimmed_clipped_R2_paired.fq.gz 755:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2173_trimmed_clipped_R1_paired.fq.gz 756:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2173_trimmed_clipped_R2_paired.fq.gz 757:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2174_trimmed_clipped_R1_paired.fq.gz 758:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2174_trimmed_clipped_R2_paired.fq.gz 759:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2175_trimmed_clipped_R1_paired.fq.gz 760:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2175_trimmed_clipped_R2_paired.fq.gz 761:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2176_trimmed_clipped_R1_paired.fq.gz 762:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2176_trimmed_clipped_R2_paired.fq.gz 763:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2177_trimmed_clipped_R1_paired.fq.gz 764:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2177_trimmed_clipped_R2_paired.fq.gz 765:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2178_trimmed_clipped_R1_paired.fq.gz 766:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2178_trimmed_clipped_R2_paired.fq.gz 767:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2179_trimmed_clipped_R1_paired.fq.gz 768:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2179_trimmed_clipped_R2_paired.fq.gz 769:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2181_trimmed_clipped_R1_paired.fq.gz 770:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2181_trimmed_clipped_R2_paired.fq.gz 771:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2182_trimmed_clipped_R1_paired.fq.gz 772:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2182_trimmed_clipped_R2_paired.fq.gz 773:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2184_trimmed_clipped_R1_paired.fq.gz 774:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2184_trimmed_clipped_R2_paired.fq.gz 775:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2185_trimmed_clipped_R1_paired.fq.gz 776:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2185_trimmed_clipped_R2_paired.fq.gz 777:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2186_trimmed_clipped_R1_paired.fq.gz 778:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2186_trimmed_clipped_R2_paired.fq.gz 779:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2188_trimmed_clipped_R1_paired.fq.gz 780:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2188_trimmed_clipped_R2_paired.fq.gz 781:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2189_trimmed_clipped_R1_paired.fq.gz 782:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2189_trimmed_clipped_R2_paired.fq.gz 783:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2193_trimmed_clipped_R1_paired.fq.gz 784:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2193_trimmed_clipped_R2_paired.fq.gz 785:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2194_trimmed_clipped_R1_paired.fq.gz 786:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2194_trimmed_clipped_R2_paired.fq.gz 787:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2195_trimmed_clipped_R1_paired.fq.gz 788:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2195_trimmed_clipped_R2_paired.fq.gz 789:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2196_trimmed_clipped_R1_paired.fq.gz 790:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2196_trimmed_clipped_R2_paired.fq.gz 791:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2198_trimmed_clipped_R1_paired.fq.gz 792:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2198_trimmed_clipped_R2_paired.fq.gz 793:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2199_trimmed_clipped_R1_paired.fq.gz 794:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2199_trimmed_clipped_R2_paired.fq.gz 795:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2201_trimmed_clipped_R1_paired.fq.gz 796:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2201_trimmed_clipped_R2_paired.fq.gz 797:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2203_trimmed_clipped_R1_paired.fq.gz 798:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2203_trimmed_clipped_R2_paired.fq.gz 799:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2204_trimmed_clipped_R1_paired.fq.gz 800:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2204_trimmed_clipped_R2_paired.fq.gz 801:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2205_trimmed_clipped_R1_paired.fq.gz 802:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2205_trimmed_clipped_R2_paired.fq.gz 803:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2206_trimmed_clipped_R1_paired.fq.gz 804:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2206_trimmed_clipped_R2_paired.fq.gz 805:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2207_trimmed_clipped_R1_paired.fq.gz 806:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2207_trimmed_clipped_R2_paired.fq.gz 807:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2208_trimmed_clipped_R1_paired.fq.gz 808:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2208_trimmed_clipped_R2_paired.fq.gz 809:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2209_trimmed_clipped_R1_paired.fq.gz 810:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2209_trimmed_clipped_R2_paired.fq.gz 811:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2210_trimmed_clipped_R1_paired.fq.gz 812:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2210_trimmed_clipped_R2_paired.fq.gz 813:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2211_trimmed_clipped_R1_paired.fq.gz 814:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2211_trimmed_clipped_R2_paired.fq.gz 815:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2212_trimmed_clipped_R1_paired.fq.gz 816:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2212_trimmed_clipped_R2_paired.fq.gz 817:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2213_trimmed_clipped_R1_paired.fq.gz 818:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2213_trimmed_clipped_R2_paired.fq.gz 819:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2215_trimmed_clipped_R1_paired.fq.gz 820:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2215_trimmed_clipped_R2_paired.fq.gz 821:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2216_trimmed_clipped_R1_paired.fq.gz 822:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2216_trimmed_clipped_R2_paired.fq.gz 823:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2217_trimmed_clipped_R1_paired.fq.gz 824:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2217_trimmed_clipped_R2_paired.fq.gz 825:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2218_trimmed_clipped_R1_paired.fq.gz 826:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2218_trimmed_clipped_R2_paired.fq.gz 827:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2219_trimmed_clipped_R1_paired.fq.gz 828:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2219_trimmed_clipped_R2_paired.fq.gz 829:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2220_trimmed_clipped_R1_paired.fq.gz 830:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2220_trimmed_clipped_R2_paired.fq.gz 831:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2221_trimmed_clipped_R1_paired.fq.gz 832:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2221_trimmed_clipped_R2_paired.fq.gz 833:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2222_trimmed_clipped_R1_paired.fq.gz 834:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2222_trimmed_clipped_R2_paired.fq.gz 835:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2223_trimmed_clipped_R1_paired.fq.gz 836:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2223_trimmed_clipped_R2_paired.fq.gz 837:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2224_trimmed_clipped_R1_paired.fq.gz 838:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2224_trimmed_clipped_R2_paired.fq.gz 839:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2225_trimmed_clipped_R1_paired.fq.gz 840:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2225_trimmed_clipped_R2_paired.fq.gz 841:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2226_trimmed_clipped_R1_paired.fq.gz 842:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2226_trimmed_clipped_R2_paired.fq.gz 843:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2228_trimmed_clipped_R1_paired.fq.gz 844:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2228_trimmed_clipped_R2_paired.fq.gz 845:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2229_trimmed_clipped_R1_paired.fq.gz 846:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2229_trimmed_clipped_R2_paired.fq.gz 847:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2230_trimmed_clipped_R1_paired.fq.gz 848:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2230_trimmed_clipped_R2_paired.fq.gz 849:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2231_trimmed_clipped_R1_paired.fq.gz 850:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2231_trimmed_clipped_R2_paired.fq.gz 851:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2232_trimmed_clipped_R1_paired.fq.gz 852:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2232_trimmed_clipped_R2_paired.fq.gz 853:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2233_trimmed_clipped_R1_paired.fq.gz 854:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2233_trimmed_clipped_R2_paired.fq.gz 855:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2235_trimmed_clipped_R1_paired.fq.gz 856:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2235_trimmed_clipped_R2_paired.fq.gz 857:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2236_trimmed_clipped_R1_paired.fq.gz 858:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2236_trimmed_clipped_R2_paired.fq.gz 859:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2237_trimmed_clipped_R1_paired.fq.gz 860:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2237_trimmed_clipped_R2_paired.fq.gz 861:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2238_trimmed_clipped_R1_paired.fq.gz 862:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2238_trimmed_clipped_R2_paired.fq.gz 863:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2239_trimmed_clipped_R1_paired.fq.gz 864:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2239_trimmed_clipped_R2_paired.fq.gz 865:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2241_trimmed_clipped_R1_paired.fq.gz 866:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2241_trimmed_clipped_R2_paired.fq.gz 867:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2244_trimmed_clipped_R1_paired.fq.gz 868:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2244_trimmed_clipped_R2_paired.fq.gz 869:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2245_trimmed_clipped_R1_paired.fq.gz 870:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2245_trimmed_clipped_R2_paired.fq.gz 871:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2276_trimmed_clipped_R1_paired.fq.gz 872:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2276_trimmed_clipped_R2_paired.fq.gz 873:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2278_trimmed_clipped_R1_paired.fq.gz 874:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2278_trimmed_clipped_R2_paired.fq.gz 875:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2279_trimmed_clipped_R1_paired.fq.gz 876:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2279_trimmed_clipped_R2_paired.fq.gz 877:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2282_trimmed_clipped_R1_paired.fq.gz 878:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2282_trimmed_clipped_R2_paired.fq.gz 879:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2286_trimmed_clipped_R1_paired.fq.gz 880:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2286_trimmed_clipped_R2_paired.fq.gz 881:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2287_trimmed_clipped_R1_paired.fq.gz 882:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2287_trimmed_clipped_R2_paired.fq.gz 883:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2288_trimmed_clipped_R1_paired.fq.gz 884:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2288_trimmed_clipped_R2_paired.fq.gz 885:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2289_trimmed_clipped_R1_paired.fq.gz 886:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2289_trimmed_clipped_R2_paired.fq.gz 887:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2292_trimmed_clipped_R1_paired.fq.gz 888:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2292_trimmed_clipped_R2_paired.fq.gz 889:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2293_trimmed_clipped_R1_paired.fq.gz 890:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2293_trimmed_clipped_R2_paired.fq.gz 891:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2298_trimmed_clipped_R1_paired.fq.gz 892:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2298_trimmed_clipped_R2_paired.fq.gz 893:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2302_trimmed_clipped_R1_paired.fq.gz 894:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2302_trimmed_clipped_R2_paired.fq.gz 895:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2304_trimmed_clipped_R1_paired.fq.gz 896:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2304_trimmed_clipped_R2_paired.fq.gz 897:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2305_trimmed_clipped_R1_paired.fq.gz 898:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2305_trimmed_clipped_R2_paired.fq.gz 899:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2306_trimmed_clipped_R1_paired.fq.gz 900:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2306_trimmed_clipped_R2_paired.fq.gz 901:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2308_trimmed_clipped_R1_paired.fq.gz 902:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2308_trimmed_clipped_R2_paired.fq.gz 903:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2309_trimmed_clipped_R1_paired.fq.gz 904:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2309_trimmed_clipped_R2_paired.fq.gz 905:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2310_trimmed_clipped_R1_paired.fq.gz 906:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2310_trimmed_clipped_R2_paired.fq.gz 907:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2312_trimmed_clipped_R1_paired.fq.gz 908:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2312_trimmed_clipped_R2_paired.fq.gz 909:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2314_trimmed_clipped_R1_paired.fq.gz 910:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2314_trimmed_clipped_R2_paired.fq.gz 911:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2317_trimmed_clipped_R1_paired.fq.gz 912:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2317_trimmed_clipped_R2_paired.fq.gz 913:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2318_trimmed_clipped_R1_paired.fq.gz 914:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2318_trimmed_clipped_R2_paired.fq.gz 915:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2322_trimmed_clipped_R1_paired.fq.gz 916:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2322_trimmed_clipped_R2_paired.fq.gz 917:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2331_trimmed_clipped_R1_paired.fq.gz 918:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2331_trimmed_clipped_R2_paired.fq.gz 919:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2334_trimmed_clipped_R1_paired.fq.gz 920:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2334_trimmed_clipped_R2_paired.fq.gz 921:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2335_trimmed_clipped_R1_paired.fq.gz 922:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2335_trimmed_clipped_R2_paired.fq.gz 923:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2336_trimmed_clipped_R1_paired.fq.gz 924:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2336_trimmed_clipped_R2_paired.fq.gz 925:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2337_trimmed_clipped_R1_paired.fq.gz 926:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2337_trimmed_clipped_R2_paired.fq.gz 927:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2338_trimmed_clipped_R1_paired.fq.gz 928:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2338_trimmed_clipped_R2_paired.fq.gz 929:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2339_trimmed_clipped_R1_paired.fq.gz 930:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2339_trimmed_clipped_R2_paired.fq.gz 931:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2340_trimmed_clipped_R1_paired.fq.gz 932:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2340_trimmed_clipped_R2_paired.fq.gz 933:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2341_trimmed_clipped_R1_paired.fq.gz 934:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2341_trimmed_clipped_R2_paired.fq.gz 935:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2342_trimmed_clipped_R1_paired.fq.gz 936:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2342_trimmed_clipped_R2_paired.fq.gz 937:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2343_trimmed_clipped_R1_paired.fq.gz 938:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2343_trimmed_clipped_R2_paired.fq.gz 939:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2344_trimmed_clipped_R1_paired.fq.gz 940:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2344_trimmed_clipped_R2_paired.fq.gz 941:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2345_trimmed_clipped_R1_paired.fq.gz 942:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2345_trimmed_clipped_R2_paired.fq.gz 943:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2346_trimmed_clipped_R1_paired.fq.gz 944:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2346_trimmed_clipped_R2_paired.fq.gz 945:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2347_trimmed_clipped_R1_paired.fq.gz 946:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2347_trimmed_clipped_R2_paired.fq.gz 947:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2348_trimmed_clipped_R1_paired.fq.gz 948:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2348_trimmed_clipped_R2_paired.fq.gz 949:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2349_trimmed_clipped_R1_paired.fq.gz 950:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2349_trimmed_clipped_R2_paired.fq.gz 951:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2350_trimmed_clipped_R1_paired.fq.gz 952:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2350_trimmed_clipped_R2_paired.fq.gz 953:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2351_trimmed_clipped_R1_paired.fq.gz 954:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2351_trimmed_clipped_R2_paired.fq.gz 955:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2352_trimmed_clipped_R1_paired.fq.gz 956:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2352_trimmed_clipped_R2_paired.fq.gz 957:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2353_trimmed_clipped_R1_paired.fq.gz 958:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2353_trimmed_clipped_R2_paired.fq.gz 959:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2354_trimmed_clipped_R1_paired.fq.gz 960:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2354_trimmed_clipped_R2_paired.fq.gz 961:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2356_trimmed_clipped_R1_paired.fq.gz 962:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2356_trimmed_clipped_R2_paired.fq.gz 963:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2357_trimmed_clipped_R1_paired.fq.gz 964:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2357_trimmed_clipped_R2_paired.fq.gz 965:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2358_trimmed_clipped_R1_paired.fq.gz 966:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2358_trimmed_clipped_R2_paired.fq.gz 967:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2359_trimmed_clipped_R1_paired.fq.gz 968:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2359_trimmed_clipped_R2_paired.fq.gz 969:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2362_trimmed_clipped_R1_paired.fq.gz 970:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2362_trimmed_clipped_R2_paired.fq.gz 971:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2363_trimmed_clipped_R1_paired.fq.gz 972:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2363_trimmed_clipped_R2_paired.fq.gz 973:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2364_trimmed_clipped_R1_paired.fq.gz 974:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2364_trimmed_clipped_R2_paired.fq.gz 975:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2365_trimmed_clipped_R1_paired.fq.gz 976:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2365_trimmed_clipped_R2_paired.fq.gz 977:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2366_trimmed_clipped_R1_paired.fq.gz 978:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2366_trimmed_clipped_R2_paired.fq.gz 979:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2367_trimmed_clipped_R1_paired.fq.gz 980:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2367_trimmed_clipped_R2_paired.fq.gz 981:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2368_trimmed_clipped_R1_paired.fq.gz 982:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2368_trimmed_clipped_R2_paired.fq.gz 983:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2369_trimmed_clipped_R1_paired.fq.gz 984:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2369_trimmed_clipped_R2_paired.fq.gz 985:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2370_trimmed_clipped_R1_paired.fq.gz 986:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2370_trimmed_clipped_R2_paired.fq.gz 987:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2371_trimmed_clipped_R1_paired.fq.gz 988:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2371_trimmed_clipped_R2_paired.fq.gz 989:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2377_trimmed_clipped_R1_paired.fq.gz 990:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2377_trimmed_clipped_R2_paired.fq.gz 991:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2378_trimmed_clipped_R1_paired.fq.gz 992:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2378_trimmed_clipped_R2_paired.fq.gz 993:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2379_trimmed_clipped_R1_paired.fq.gz 994:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2379_trimmed_clipped_R2_paired.fq.gz 995:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2380_trimmed_clipped_R1_paired.fq.gz 996:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2380_trimmed_clipped_R2_paired.fq.gz 997:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2381_trimmed_clipped_R1_paired.fq.gz 998:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2381_trimmed_clipped_R2_paired.fq.gz 999:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2382_trimmed_clipped_R1_paired.fq.gz 1000:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2382_trimmed_clipped_R2_paired.fq.gz 1001:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2383_trimmed_clipped_R1_paired.fq.gz 1002:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2383_trimmed_clipped_R2_paired.fq.gz 1003:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2386_trimmed_clipped_R1_paired.fq.gz 1004:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2386_trimmed_clipped_R2_paired.fq.gz 1005:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2388_trimmed_clipped_R1_paired.fq.gz 1006:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2388_trimmed_clipped_R2_paired.fq.gz 1007:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2389_trimmed_clipped_R1_paired.fq.gz 1008:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2389_trimmed_clipped_R2_paired.fq.gz 1009:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2394_trimmed_clipped_R1_paired.fq.gz 1010:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2394_trimmed_clipped_R2_paired.fq.gz 1011:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2396_trimmed_clipped_R1_paired.fq.gz 1012:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2396_trimmed_clipped_R2_paired.fq.gz 1013:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2402_trimmed_clipped_R1_paired.fq.gz 1014:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2402_trimmed_clipped_R2_paired.fq.gz 1015:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2404_trimmed_clipped_R1_paired.fq.gz 1016:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2404_trimmed_clipped_R2_paired.fq.gz 1017:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2405_trimmed_clipped_R1_paired.fq.gz 1018:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2405_trimmed_clipped_R2_paired.fq.gz 1019:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2483_trimmed_clipped_R1_paired.fq.gz 1020:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2483_trimmed_clipped_R2_paired.fq.gz 1021:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2490_trimmed_clipped_R1_paired.fq.gz 1022:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2490_trimmed_clipped_R2_paired.fq.gz 1023:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2501_trimmed_clipped_R1_paired.fq.gz 1024:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2501_trimmed_clipped_R2_paired.fq.gz 1025:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2504_trimmed_clipped_R1_paired.fq.gz 1026:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2504_trimmed_clipped_R2_paired.fq.gz 1027:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2505_trimmed_clipped_R1_paired.fq.gz 1028:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2505_trimmed_clipped_R2_paired.fq.gz 1029:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2506_trimmed_clipped_R1_paired.fq.gz 1030:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2506_trimmed_clipped_R2_paired.fq.gz 1031:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2507_trimmed_clipped_R1_paired.fq.gz 1032:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2507_trimmed_clipped_R2_paired.fq.gz 1033:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2508_trimmed_clipped_R1_paired.fq.gz 1034:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2508_trimmed_clipped_R2_paired.fq.gz 1035:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2509_trimmed_clipped_R1_paired.fq.gz 1036:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2509_trimmed_clipped_R2_paired.fq.gz 1037:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2510_trimmed_clipped_R1_paired.fq.gz 1038:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2510_trimmed_clipped_R2_paired.fq.gz 1039:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2511_trimmed_clipped_R1_paired.fq.gz 1040:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2511_trimmed_clipped_R2_paired.fq.gz 1041:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2512_trimmed_clipped_R1_paired.fq.gz 1042:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2512_trimmed_clipped_R2_paired.fq.gz 1043:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2513_trimmed_clipped_R1_paired.fq.gz 1044:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2513_trimmed_clipped_R2_paired.fq.gz 1045:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2514_trimmed_clipped_R1_paired.fq.gz 1046:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2514_trimmed_clipped_R2_paired.fq.gz 1047:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2515_trimmed_clipped_R1_paired.fq.gz 1048:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2515_trimmed_clipped_R2_paired.fq.gz 1049:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2516_trimmed_clipped_R1_paired.fq.gz 1050:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2516_trimmed_clipped_R2_paired.fq.gz 1051:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2517_trimmed_clipped_R1_paired.fq.gz 1052:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2517_trimmed_clipped_R2_paired.fq.gz 1053:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2518_trimmed_clipped_R1_paired.fq.gz 1054:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2518_trimmed_clipped_R2_paired.fq.gz 1055:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2531_trimmed_clipped_R1_paired.fq.gz 1056:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2531_trimmed_clipped_R2_paired.fq.gz 1057:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2532_trimmed_clipped_R1_paired.fq.gz 1058:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2532_trimmed_clipped_R2_paired.fq.gz 1059:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2533_trimmed_clipped_R1_paired.fq.gz 1060:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2533_trimmed_clipped_R2_paired.fq.gz 1061:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2534_trimmed_clipped_R1_paired.fq.gz 1062:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2534_trimmed_clipped_R2_paired.fq.gz 1063:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2535_trimmed_clipped_R1_paired.fq.gz 1064:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2535_trimmed_clipped_R2_paired.fq.gz 1065:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2536_trimmed_clipped_R1_paired.fq.gz 1066:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2536_trimmed_clipped_R2_paired.fq.gz 1067:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2537_trimmed_clipped_R1_paired.fq.gz 1068:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2537_trimmed_clipped_R2_paired.fq.gz 1069:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2538_trimmed_clipped_R1_paired.fq.gz 1070:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2538_trimmed_clipped_R2_paired.fq.gz 1071:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2539_trimmed_clipped_R1_paired.fq.gz 1072:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2539_trimmed_clipped_R2_paired.fq.gz 1073:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2540_trimmed_clipped_R1_paired.fq.gz 1074:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2540_trimmed_clipped_R2_paired.fq.gz 1075:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2541_trimmed_clipped_R1_paired.fq.gz 1076:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2541_trimmed_clipped_R2_paired.fq.gz 1077:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2542_trimmed_clipped_R1_paired.fq.gz 1078:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2542_trimmed_clipped_R2_paired.fq.gz 1079:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2543_trimmed_clipped_R1_paired.fq.gz 1080:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2543_trimmed_clipped_R2_paired.fq.gz 1081:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2544_trimmed_clipped_R1_paired.fq.gz 1082:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2544_trimmed_clipped_R2_paired.fq.gz 1083:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2545_trimmed_clipped_R1_paired.fq.gz 1084:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2545_trimmed_clipped_R2_paired.fq.gz 1085:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2546_trimmed_clipped_R1_paired.fq.gz 1086:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2546_trimmed_clipped_R2_paired.fq.gz 1087:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2547_trimmed_clipped_R1_paired.fq.gz 1088:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2547_trimmed_clipped_R2_paired.fq.gz 1089:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2548_trimmed_clipped_R1_paired.fq.gz 1090:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2548_trimmed_clipped_R2_paired.fq.gz 1091:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2549_trimmed_clipped_R1_paired.fq.gz 1092:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2549_trimmed_clipped_R2_paired.fq.gz 1093:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2550_trimmed_clipped_R1_paired.fq.gz 1094:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2550_trimmed_clipped_R2_paired.fq.gz 1095:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2551_trimmed_clipped_R1_paired.fq.gz 1096:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2551_trimmed_clipped_R2_paired.fq.gz 1097:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2552_trimmed_clipped_R1_paired.fq.gz 1098:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2552_trimmed_clipped_R2_paired.fq.gz 1099:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2553_trimmed_clipped_R1_paired.fq.gz 1100:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2553_trimmed_clipped_R2_paired.fq.gz 1101:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2554_trimmed_clipped_R1_paired.fq.gz 1102:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2554_trimmed_clipped_R2_paired.fq.gz 1103:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2555_trimmed_clipped_R1_paired.fq.gz 1104:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2555_trimmed_clipped_R2_paired.fq.gz 1105:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2556_trimmed_clipped_R1_paired.fq.gz 1106:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2556_trimmed_clipped_R2_paired.fq.gz 1107:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2557_trimmed_clipped_R1_paired.fq.gz 1108:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2557_trimmed_clipped_R2_paired.fq.gz 1109:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2558_trimmed_clipped_R1_paired.fq.gz 1110:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2558_trimmed_clipped_R2_paired.fq.gz 1111:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2559_trimmed_clipped_R1_paired.fq.gz 1112:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2559_trimmed_clipped_R2_paired.fq.gz 1113:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2561_trimmed_clipped_R1_paired.fq.gz 1114:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2561_trimmed_clipped_R2_paired.fq.gz 1115:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2563_trimmed_clipped_R1_paired.fq.gz 1116:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2563_trimmed_clipped_R2_paired.fq.gz 1117:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2565_trimmed_clipped_R1_paired.fq.gz 1118:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2565_trimmed_clipped_R2_paired.fq.gz 1119:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2566_trimmed_clipped_R1_paired.fq.gz 1120:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2566_trimmed_clipped_R2_paired.fq.gz 1121:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2568_trimmed_clipped_R1_paired.fq.gz 1122:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2568_trimmed_clipped_R2_paired.fq.gz 1123:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2571_trimmed_clipped_R1_paired.fq.gz 1124:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2571_trimmed_clipped_R2_paired.fq.gz 1125:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2572_trimmed_clipped_R1_paired.fq.gz 1126:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2572_trimmed_clipped_R2_paired.fq.gz 1127:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2575_trimmed_clipped_R1_paired.fq.gz 1128:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2575_trimmed_clipped_R2_paired.fq.gz 1129:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2576_trimmed_clipped_R1_paired.fq.gz 1130:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2576_trimmed_clipped_R2_paired.fq.gz 1131:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2577_trimmed_clipped_R1_paired.fq.gz 1132:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2577_trimmed_clipped_R2_paired.fq.gz 1133:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2578_trimmed_clipped_R1_paired.fq.gz 1134:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2578_trimmed_clipped_R2_paired.fq.gz 1135:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2579_trimmed_clipped_R1_paired.fq.gz 1136:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2579_trimmed_clipped_R2_paired.fq.gz 1137:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2581_trimmed_clipped_R1_paired.fq.gz 1138:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2581_trimmed_clipped_R2_paired.fq.gz 1139:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2582_trimmed_clipped_R1_paired.fq.gz 1140:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2582_trimmed_clipped_R2_paired.fq.gz 1141:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2585_trimmed_clipped_R1_paired.fq.gz 1142:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2585_trimmed_clipped_R2_paired.fq.gz 1143:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2588_trimmed_clipped_R1_paired.fq.gz 1144:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2588_trimmed_clipped_R2_paired.fq.gz 1145:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2591_trimmed_clipped_R1_paired.fq.gz 1146:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2591_trimmed_clipped_R2_paired.fq.gz 1147:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2592_trimmed_clipped_R1_paired.fq.gz 1148:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2592_trimmed_clipped_R2_paired.fq.gz 1149:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2593_trimmed_clipped_R1_paired.fq.gz 1150:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2593_trimmed_clipped_R2_paired.fq.gz 1151:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2594_trimmed_clipped_R1_paired.fq.gz 1152:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2594_trimmed_clipped_R2_paired.fq.gz 1153:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2596_trimmed_clipped_R1_paired.fq.gz 1154:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2596_trimmed_clipped_R2_paired.fq.gz 1155:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2597_trimmed_clipped_R1_paired.fq.gz 1156:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2597_trimmed_clipped_R2_paired.fq.gz 1157:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2598_trimmed_clipped_R1_paired.fq.gz 1158:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2598_trimmed_clipped_R2_paired.fq.gz 1159:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2600_trimmed_clipped_R1_paired.fq.gz 1160:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2600_trimmed_clipped_R2_paired.fq.gz 1161:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2605_trimmed_clipped_R1_paired.fq.gz 1162:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2605_trimmed_clipped_R2_paired.fq.gz 1163:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2607_trimmed_clipped_R1_paired.fq.gz 1164:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2607_trimmed_clipped_R2_paired.fq.gz 1165:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2608_trimmed_clipped_R1_paired.fq.gz 1166:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2608_trimmed_clipped_R2_paired.fq.gz 1167:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2609_trimmed_clipped_R1_paired.fq.gz 1168:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2609_trimmed_clipped_R2_paired.fq.gz 1169:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2611_trimmed_clipped_R1_paired.fq.gz 1170:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2611_trimmed_clipped_R2_paired.fq.gz 1171:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2612_trimmed_clipped_R1_paired.fq.gz 1172:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2612_trimmed_clipped_R2_paired.fq.gz 1173:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2613_trimmed_clipped_R1_paired.fq.gz 1174:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2613_trimmed_clipped_R2_paired.fq.gz 1175:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2615_trimmed_clipped_R1_paired.fq.gz 1176:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2615_trimmed_clipped_R2_paired.fq.gz 1177:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2617_trimmed_clipped_R1_paired.fq.gz 1178:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2617_trimmed_clipped_R2_paired.fq.gz 1179:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2619_trimmed_clipped_R1_paired.fq.gz 1180:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2619_trimmed_clipped_R2_paired.fq.gz 1181:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2620_trimmed_clipped_R1_paired.fq.gz 1182:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2620_trimmed_clipped_R2_paired.fq.gz 1183:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2621_trimmed_clipped_R1_paired.fq.gz 1184:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2621_trimmed_clipped_R2_paired.fq.gz 1185:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2622_trimmed_clipped_R1_paired.fq.gz 1186:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2622_trimmed_clipped_R2_paired.fq.gz 1187:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2625_trimmed_clipped_R1_paired.fq.gz 1188:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2625_trimmed_clipped_R2_paired.fq.gz 1189:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2627_trimmed_clipped_R1_paired.fq.gz 1190:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2627_trimmed_clipped_R2_paired.fq.gz 1191:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2640_trimmed_clipped_R1_paired.fq.gz 1192:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2640_trimmed_clipped_R2_paired.fq.gz 1193:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2641_trimmed_clipped_R1_paired.fq.gz 1194:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2641_trimmed_clipped_R2_paired.fq.gz 1195:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2642_trimmed_clipped_R1_paired.fq.gz 1196:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2642_trimmed_clipped_R2_paired.fq.gz 1197:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2643_trimmed_clipped_R1_paired.fq.gz 1198:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2643_trimmed_clipped_R2_paired.fq.gz 1199:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2644_trimmed_clipped_R1_paired.fq.gz 1200:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2644_trimmed_clipped_R2_paired.fq.gz 1201:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2645_trimmed_clipped_R1_paired.fq.gz 1202:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2645_trimmed_clipped_R2_paired.fq.gz 1203:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2646_trimmed_clipped_R1_paired.fq.gz 1204:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2646_trimmed_clipped_R2_paired.fq.gz 1205:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2648_trimmed_clipped_R1_paired.fq.gz 1206:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2648_trimmed_clipped_R2_paired.fq.gz 1207:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2649_trimmed_clipped_R1_paired.fq.gz 1208:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2649_trimmed_clipped_R2_paired.fq.gz 1209:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2650_trimmed_clipped_R1_paired.fq.gz 1210:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2650_trimmed_clipped_R2_paired.fq.gz 1211:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2651_trimmed_clipped_R1_paired.fq.gz 1212:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2651_trimmed_clipped_R2_paired.fq.gz 1213:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2652_trimmed_clipped_R1_paired.fq.gz 1214:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2652_trimmed_clipped_R2_paired.fq.gz 1215:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2653_trimmed_clipped_R1_paired.fq.gz 1216:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2653_trimmed_clipped_R2_paired.fq.gz 1217:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2654_trimmed_clipped_R1_paired.fq.gz 1218:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2654_trimmed_clipped_R2_paired.fq.gz 1219:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2655_trimmed_clipped_R1_paired.fq.gz 1220:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2655_trimmed_clipped_R2_paired.fq.gz 1221:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2656_trimmed_clipped_R1_paired.fq.gz 1222:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2656_trimmed_clipped_R2_paired.fq.gz 1223:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2657_trimmed_clipped_R1_paired.fq.gz 1224:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2657_trimmed_clipped_R2_paired.fq.gz 1225:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2658_trimmed_clipped_R1_paired.fq.gz 1226:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2658_trimmed_clipped_R2_paired.fq.gz 1227:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2659_trimmed_clipped_R1_paired.fq.gz 1228:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2659_trimmed_clipped_R2_paired.fq.gz 1229:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2661_trimmed_clipped_R1_paired.fq.gz 1230:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2661_trimmed_clipped_R2_paired.fq.gz 1231:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2662_trimmed_clipped_R1_paired.fq.gz 1232:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2662_trimmed_clipped_R2_paired.fq.gz 1233:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2663_trimmed_clipped_R1_paired.fq.gz 1234:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2663_trimmed_clipped_R2_paired.fq.gz 1235:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2664_trimmed_clipped_R1_paired.fq.gz 1236:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2664_trimmed_clipped_R2_paired.fq.gz 1237:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2665_trimmed_clipped_R1_paired.fq.gz 1238:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2665_trimmed_clipped_R2_paired.fq.gz 1239:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2666_trimmed_clipped_R1_paired.fq.gz 1240:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2666_trimmed_clipped_R2_paired.fq.gz 1241:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2667_trimmed_clipped_R1_paired.fq.gz 1242:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2667_trimmed_clipped_R2_paired.fq.gz 1243:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2668_trimmed_clipped_R1_paired.fq.gz 1244:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2668_trimmed_clipped_R2_paired.fq.gz 1245:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2669_trimmed_clipped_R1_paired.fq.gz 1246:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2669_trimmed_clipped_R2_paired.fq.gz 1247:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2670_trimmed_clipped_R1_paired.fq.gz 1248:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2670_trimmed_clipped_R2_paired.fq.gz 1249:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2671_trimmed_clipped_R1_paired.fq.gz 1250:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2671_trimmed_clipped_R2_paired.fq.gz 1251:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2672_trimmed_clipped_R1_paired.fq.gz 1252:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2672_trimmed_clipped_R2_paired.fq.gz 1253:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2673_trimmed_clipped_R1_paired.fq.gz 1254:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2673_trimmed_clipped_R2_paired.fq.gz 1255:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2674_trimmed_clipped_R1_paired.fq.gz 1256:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2674_trimmed_clipped_R2_paired.fq.gz 1257:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2675_trimmed_clipped_R1_paired.fq.gz 1258:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2675_trimmed_clipped_R2_paired.fq.gz 1259:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2676_trimmed_clipped_R1_paired.fq.gz 1260:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2676_trimmed_clipped_R2_paired.fq.gz 1261:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2677_trimmed_clipped_R1_paired.fq.gz 1262:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2677_trimmed_clipped_R2_paired.fq.gz 1263:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2678_trimmed_clipped_R1_paired.fq.gz 1264:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2678_trimmed_clipped_R2_paired.fq.gz 1265:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2679_trimmed_clipped_R1_paired.fq.gz 1266:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2679_trimmed_clipped_R2_paired.fq.gz 1267:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2680_trimmed_clipped_R1_paired.fq.gz 1268:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2680_trimmed_clipped_R2_paired.fq.gz 1269:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2681_trimmed_clipped_R1_paired.fq.gz 1270:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2681_trimmed_clipped_R2_paired.fq.gz 1271:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2682_trimmed_clipped_R1_paired.fq.gz 1272:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2682_trimmed_clipped_R2_paired.fq.gz 1273:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2683_trimmed_clipped_R1_paired.fq.gz 1274:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2683_trimmed_clipped_R2_paired.fq.gz 1275:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2684_trimmed_clipped_R1_paired.fq.gz 1276:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2684_trimmed_clipped_R2_paired.fq.gz 1277:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2685_trimmed_clipped_R1_paired.fq.gz 1278:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2685_trimmed_clipped_R2_paired.fq.gz 1279:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2687_trimmed_clipped_R1_paired.fq.gz 1280:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2687_trimmed_clipped_R2_paired.fq.gz 1281:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2688_trimmed_clipped_R1_paired.fq.gz 1282:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2688_trimmed_clipped_R2_paired.fq.gz 1283:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2689_trimmed_clipped_R1_paired.fq.gz 1284:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2689_trimmed_clipped_R2_paired.fq.gz 1285:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2920_trimmed_clipped_R1_paired.fq.gz 1286:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2920_trimmed_clipped_R2_paired.fq.gz 1287:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2923_trimmed_clipped_R1_paired.fq.gz 1288:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2923_trimmed_clipped_R2_paired.fq.gz 1289:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2924_trimmed_clipped_R1_paired.fq.gz 1290:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2924_trimmed_clipped_R2_paired.fq.gz 1291:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2926_trimmed_clipped_R1_paired.fq.gz 1292:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2926_trimmed_clipped_R2_paired.fq.gz 1293:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2927_trimmed_clipped_R1_paired.fq.gz 1294:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2927_trimmed_clipped_R2_paired.fq.gz 1295:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2928_trimmed_clipped_R1_paired.fq.gz 1296:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2928_trimmed_clipped_R2_paired.fq.gz 1297:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2929_trimmed_clipped_R1_paired.fq.gz 1298:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2929_trimmed_clipped_R2_paired.fq.gz 1299:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2930_trimmed_clipped_R1_paired.fq.gz 1300:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2930_trimmed_clipped_R2_paired.fq.gz 1301:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2931_trimmed_clipped_R1_paired.fq.gz 1302:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2931_trimmed_clipped_R2_paired.fq.gz 1303:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2935_trimmed_clipped_R1_paired.fq.gz 1304:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2935_trimmed_clipped_R2_paired.fq.gz 1305:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2936_trimmed_clipped_R1_paired.fq.gz 1306:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2936_trimmed_clipped_R2_paired.fq.gz 1307:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2937_trimmed_clipped_R1_paired.fq.gz 1308:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2937_trimmed_clipped_R2_paired.fq.gz 1309:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2938_trimmed_clipped_R1_paired.fq.gz 1310:/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/trimmed/ABLG2938_trimmed_clipped_R2_paired.fq.gz