/home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10408_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10409_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10410_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10411_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10412_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10413_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10414_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10415_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10416_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10417_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10418_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10419_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10420_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10421_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10422_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10423_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10424_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10425_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10426_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10427_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10428_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10429_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10430_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10431_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10432_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10433_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10434_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10435_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10436_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10437_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10438_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10439_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10440_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10441_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10442_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10443_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10444_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10445_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10446_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10447_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10448_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10449_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10450_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10451_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10452_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10453_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10454_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10455_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10458_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10459_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10460_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10461_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10462_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10463_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10464_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10465_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10466_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10467_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10468_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10469_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10470_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10471_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10472_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10473_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10474_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10475_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10476_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10477_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10478_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10479_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10480_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10481_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10482_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10483_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10484_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10485_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10486_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10487_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10488_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10489_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10490_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10491_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10492_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10493_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10494_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10495_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10496_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10497_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10498_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10499_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10500_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10502_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10718_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10719_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10720_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10721_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10723_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10724_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10725_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10728_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10729_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10730_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10731_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10732_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10733_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10734_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10735_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10737_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10738_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10739_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10740_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10742_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10743_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10744_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10746_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10747_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10749_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10752_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10753_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10755_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10757_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10758_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10759_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10761_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10763_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10764_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10818_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10820_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10821_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10823_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10824_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10825_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10827_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10828_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10832_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10833_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10834_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10836_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10837_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10839_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10843_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10844_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10846_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10847_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10849_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10850_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10851_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10852_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10853_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10854_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10855_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10856_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10857_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10858_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10859_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10860_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10861_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10862_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10863_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10864_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10865_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10866_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10867_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10868_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10915_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10916_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10917_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10918_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10920_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10921_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10922_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10923_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10928_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG10930_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1927_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1928_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1929_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1930_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1931_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1932_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1936_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1937_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1938_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1941_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1942_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1943_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1944_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1945_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1946_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1947_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1948_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1950_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1952_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1953_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1955_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1956_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1957_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1958_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1961_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1962_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1963_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1965_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1968_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1969_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1970_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1971_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1972_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1974_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1975_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1976_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1977_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19808_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19810_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1981_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19811_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19812_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19813_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19814_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19816_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19817_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19819_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19820_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1982_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19821_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19822_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19823_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19824_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19826_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19827_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19828_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19829_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19830_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19831_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19832_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19833_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19834_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19835_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19836_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19839_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19840_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19841_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19842_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19843_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19848_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19849_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19850_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19851_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19852_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19853_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19854_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19856_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19857_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19861_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19862_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19865_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19866_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19867_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG19869_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1987_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1988_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1990_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1991_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1992_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1993_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1994_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1996_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1997_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG1999_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2004_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2005_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2009_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2010_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2012_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2013_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2014_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2017_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2018_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2020_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2021_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2022_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2023_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2027_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2032_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2037_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2042_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2045_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2054_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2060_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2063_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2065_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2067_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2071_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2076_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2077_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2079_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2080_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2082_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2083_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2086_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2087_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2088_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2090_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2091_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2092_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2093_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2094_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2095_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2096_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2097_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2098_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2099_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2100_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2101_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2102_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2103_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2104_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2105_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2107_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2108_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2109_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2110_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2111_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2112_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2113_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2114_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2115_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2116_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2117_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2118_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2120_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2121_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2123_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2124_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2125_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2126_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2127_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2129_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2132_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2133_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2134_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2135_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2136_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2137_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2138_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2139_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2140_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2141_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2142_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2143_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2144_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2145_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2146_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2147_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2149_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2150_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2151_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2152_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2153_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2154_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2155_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2156_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2157_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2158_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2159_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2160_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2161_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2162_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2163_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2164_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2165_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2166_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2167_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2168_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2169_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2170_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2171_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2172_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2173_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2174_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2175_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2176_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2177_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2178_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2179_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2181_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2182_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2184_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2185_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2186_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2188_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2189_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2193_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2194_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2195_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2196_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2198_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2199_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2201_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2203_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2204_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2205_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2206_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2207_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2208_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2209_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2210_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2211_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2212_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2213_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2215_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2216_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2217_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2218_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2219_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2220_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2221_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2222_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2223_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2224_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2225_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2226_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2228_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2229_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2230_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2231_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2232_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2233_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2235_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2236_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2237_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2238_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2239_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2241_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2244_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2245_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2276_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2278_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2279_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2282_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2286_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2287_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2288_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2289_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2292_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2293_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2298_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2302_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2304_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2305_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2306_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2308_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2309_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2310_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2312_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2314_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2317_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2318_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2322_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2331_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2334_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2335_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2336_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2337_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2338_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2339_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2340_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2341_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2342_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2343_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2344_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2345_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2346_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2347_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2348_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2349_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2350_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2351_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2352_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2353_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2354_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2356_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2357_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2358_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2359_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2362_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2363_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2364_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2365_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2366_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2367_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2368_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2369_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2370_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2371_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2377_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2378_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2379_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2380_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2381_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2382_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2383_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2386_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2388_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2389_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2394_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2396_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2402_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2404_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2405_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2483_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2490_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2501_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2504_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2505_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2506_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2507_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2508_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2509_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2510_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2511_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2512_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2513_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2514_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2515_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2516_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2517_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2518_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2531_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2532_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2533_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2534_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2535_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2536_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2537_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2538_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2539_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2540_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2541_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2542_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2543_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2544_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2545_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2546_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2547_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2548_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2549_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2550_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2551_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2552_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2553_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2554_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2555_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2556_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2557_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2558_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2559_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2561_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2563_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2565_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2566_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2568_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2571_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2572_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2575_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2576_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2577_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2578_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2579_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2581_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2582_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2585_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2588_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2591_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2592_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2593_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2594_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2596_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2597_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2598_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2600_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2605_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2607_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2608_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2609_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2611_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2612_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2613_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2615_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2617_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2619_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2620_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2621_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2622_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2625_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2627_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2640_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2641_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2642_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2643_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2644_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2645_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2646_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2648_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2649_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2650_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2651_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2652_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2653_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2654_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2655_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2656_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2657_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2658_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2659_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2661_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2662_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2663_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2664_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2665_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2666_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2667_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2668_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2669_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2670_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2671_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2672_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2673_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2674_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2675_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2676_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2677_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2678_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2679_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2680_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2681_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2682_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2683_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2684_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2685_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2687_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2688_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2689_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2920_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2923_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2924_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2926_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2927_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2928_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2929_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2930_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2931_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2935_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2936_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2937_sorted_dedup_clipped.bam /home/lspencer/pcod-lcwgs-2023/analysis-20240606/reference/bamtools/pcod-refs_ABLG2938_sorted_dedup_clipped.bam