Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026856147.1:307900-307997 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_9399.ps.pdf
Locus Name: Cluster_9399
UAAGAAAUCCUGGCAAAACGCAUAGAUAAGGCAAGUUGAGCUGAAUAUUUAAACAGUCCAACUGUCUUGAUUUAUACAGGAAGCCAGCGAAAGCUGCA
.......(((((((.....))((((((((((((.((((.((((..........)))).)))))))))).)))))).))))).((.(((....))))). (-27.10)
UAAGAAAUCCUGGCAAAACGCAUAG......................................................................... len:25 al:1
UAAGAAAUCCUGGCAAAACGCAUAGAUAAG.................................................................... len:30 al:1
UAAGAAAUCCUGGaAAAACGCAU........................................................................... len:23 al:1
UAuGAAAUCCUGGCAAAACGCAU........................................................................... len:23 al:1
UAAGAAAUCCUGGaAAAACGCAUAGAUAAGG................................................................... len:31 al:1
UAAGAAAUCCUGGCAAAACGCAUAGAUAAGG................................................................... len:31 al:2
UAAGAAAUCCUGGCAAAACGCAc........................................................................... len:23 al:3
UAAGAAAUCCUGGCAAAACGCAU........................................................................... len:23 al:5
UAAGAAAUCCUGGCAAAACGCAUAGAUAA..................................................................... len:29 al:1
UAAGAAAUCuUGGCAAAACGCAUAGAUA...................................................................... len:28 al:1
....................CAUAGAUAAGGCAAGUUGgGCU........................................................ len:22 al:2
....................CAUAGAUAAGGCAAGUUGAGCU........................................................ len:22 al:14
....................CAUAGAUAAGGCAAGUUGAGC......................................................... len:21 al:1
....................CAUAGAUAAGGCAAGUUGAGCa........................................................ len:22 al:2
....................CAUAGAUAAGGCAAGUUGAGCc........................................................ len:22 al:3
....................CAUAGAUAAGaCAAGUUGAGCU........................................................ len:22 al:6
.....................AUAGAUAAGGCAAGUUGAGCc........................................................ len:21 al:1
.....................AUAGAUAAGGCAAGUUGAGCU........................................................ len:21 al:2
..........................UAAGGCAAGUUGAGCUGAAUAUUUAAACAGU......................................... len:31 al:1
.......................................................GUCCAACUGUCUUGAUUUAUAC..................... len:22 al:1
.......................................................GUCCAACUGUCUUGAUUUAUACu.................... len:23 al:1
........................................................UCCAACUGUCcUGAUUUAUACA.................... len:22 al:1
........................................................UCCAACUGUCUUGAUUUAUAu..................... len:21 al:4
........................................................UCCAACUGUCcUGAUUUAUAC..................... len:21 al:1
........................................................UCCAACUGUCUUGAUUUAUACAa................... len:23 al:2
........................................................UCCAACUGUCUUGAUUUAUcC..................... len:21 al:1
........................................................UCCAACUGcCUUGAUUUAUACA.................... len:22 al:1
........................................................UCCAACUGUCUUGAcUUAUACA.................... len:22 al:1
........................................................UCCAACUGUCUUGAUcUAUAC..................... len:21 al:2
........................................................UCCAACUGUCUUGAUUUAUAC..................... len:21 al:130
........................................................UCCAACUGUCUUGAUUUAgACA.................... len:22 al:1
........................................................UCCAACUGUCUUGAUUUAUACuG................... len:23 al:2
........................................................UCCAACUGUCUUGAUUUAUACc.................... len:22 al:323
........................................................UCCAACUGUCUUGAUUUAU....................... len:19 al:1
........................................................UCCAACUGUCUUGAUUUAUACA.................... len:22 al:164
........................................................UCCAACUGUCUUGAUUUAUA...................... len:20 al:1
........................................................UCCAACUGUCUUGgUUUAUACA.................... len:22 al:1
........................................................UCCAACUGUCUUGAUUUAUAuA.................... len:22 al:2
........................................................UCCgACUGUCUUGAUUUAUAC..................... len:21 al:1
........................................................UCCAACcGUCUUGAUUUAUAC..................... len:21 al:2
........................................................UCCAACUGUCUUGAUUUAUACu.................... len:22 al:2648
..........................................................CAACUGUCUUGAUUUAUACu.................... len:20 al:6
..........................................................CAACUGUCUUGAUUUAUACc.................... len:20 al:1