Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026856096.1:61322-61421 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_9285.ps.pdf
Locus Name: Cluster_9285
CAAGAAUUCCUUAUCUACGGUGAUGCGUAGGCGUUGUGCACAGAUUUUAUAGUCUGACUGUGUAUUUCGUCUAAGCACCACUGAGAUGGGACACCAGCAG
.......((((.((((.(((((.(((.((((((..((((((((..............))))))))..)))))).))).)))))))))))))......... (-36.60)
......................AUGCGUAGGCGcUGUGCACAGA........................................................ len:22 al:6
......................AUGCGUAGGCGUUGUGCACAcA........................................................ len:22 al:2
......................AUGCGUAGGCGUUGUGCACcGA........................................................ len:22 al:1
......................AUGCGUcGGCGUUGUGCACAGA........................................................ len:22 al:1
......................AUGCGUAGGCGUUGUGCAa........................................................... len:19 al:3
......................AUGCGUAGGCGUUGUGCgCAGA........................................................ len:22 al:10
......................AUGCGUAGGCGUUGUGCAgA.......................................................... len:20 al:1
......................AUGCGUAGGCGUUGcGCACAGA........................................................ len:22 al:7
......................AUGCGUAGGCGUUGgGCACAGA........................................................ len:22 al:1
......................AUGCGUAGGCGUcGUGCACAGA........................................................ len:22 al:6
......................AUGCGUgGGCGUUGUGCACAGA........................................................ len:22 al:3
......................uUGCGUAGGCGUUGUGCACAGA........................................................ len:22 al:3
......................AUGCGUAGGCGUUGUGCACAa......................................................... len:21 al:2
......................AUGCGUAGGCGUUGUGCgCAG......................................................... len:21 al:1
......................AUGCGUAGGCGUUGUGCACAGg........................................................ len:22 al:9
......................AUGCGUAGGCaUUGUGCACAGA........................................................ len:22 al:1
......................gUGCGUAGGCGUUGUGCACAGA........................................................ len:22 al:7
......................AUGCGUAGGCGUUGUGuACAGA........................................................ len:22 al:1
......................AUGCGUAGGCGUUGUGCACAGAaU...................................................... len:24 al:1
......................AUGCGUAGGCGUUGUGCACuGA........................................................ len:22 al:1
......................AUGCGUAGGCGUUGUGCACAGc........................................................ len:22 al:1
......................gUGCGUAGGCGUUGUGCAC........................................................... len:19 al:1
......................AUGCGUAGGaGUUGUGCACAGA........................................................ len:22 al:2
......................AUGCGcAGGCGUUGUGCACAGA........................................................ len:22 al:3
......................cUGCGUAGGCGUUGUGCACAGA........................................................ len:22 al:1
......................AUGCGUAGGCGUUGUGCACAG......................................................... len:21 al:32
......................AcGCGUAGGCGUUGUGCACAGA........................................................ len:22 al:4
......................AUGCGUAGGuGUUGUGCACAGA........................................................ len:22 al:1
......................AUGCGUAGGCGUUGUGCACAGAa....................................................... len:23 al:20
......................AUGCGUuGGCGUUGUGCACAGA........................................................ len:22 al:1
......................AUaCGUAGGCGUUGUGCAC........................................................... len:19 al:1
......................AUGCGUAGGCGUUGUGCACgGA........................................................ len:22 al:5
......................AUGCGUAGGCGUUGUGCAu........................................................... len:19 al:11
......................AUGCGUAGGCGUUGUGCAuAGA........................................................ len:22 al:1
......................AUGgGUAGGCGUUGUGCACAGA........................................................ len:22 al:1
......................AUGCGUAGGCGUUGUGCACAGA........................................................ len:22 al:1662
......................AUGCaUAGGCGUUGUGCACAGA........................................................ len:22 al:2
......................AUGCGUAGGCGUUGUGCAC........................................................... len:19 al:112
......................AUGCGUAGGCGUUGUGCACAGu........................................................ len:22 al:21
..........................................................UGUGUAUUUCGUCUAAGCACCAaU.................. len:24 al:4
..........................................................UGUGUAUUUCGUCUAAGCACCAu................... len:23 al:4
..........................................................UGUGUAUUUCGUCUAAGCACCAa................... len:23 al:1
..........................................................UGUGUAUUUCGUCUAAGCACCA.................... len:22 al:4
..........................................................UGUGUAUUUCGUCUAAGCACu..................... len:21 al:1