Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026854101.1:94090-94188 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_5150.ps.pdf
Locus Name: Cluster_5150
CAGACAUCACCUCCAUUGGCUUUGAUUGUCCAAACGCAAUUCUUGUCCAUUAUACCAAGAACUGUGUAUGGACAUCAGUGCCCAAAUACAUAGCAGCAU
.................(((.(((((.(((((.(((((.((((((..........)))))).))))).)))))))))).)))................. (-28.20)
......................UGAUUGUCCAAACGCAAUUCUUG...................................................... len:23 al:3
......................UGAUUGUCCAAACGCAAUUCU........................................................ len:21 al:1
.........................................................AGAACUGUGUAUGGACAUu....................... len:19 al:2
.........................................................AGAACUGUGUAUGGACAUCAGU.................... len:22 al:45
.........................................................AGAACUGUGUAUGGACAUCAGa.................... len:22 al:2
.........................................................AGAACUGUGUAUGGACAUCAGc.................... len:22 al:3
.........................................................AGAACUGUGUAUGGACAUa....................... len:19 al:1
.........................................................AGAACUGUaUAUGGACAUC....................... len:19 al:1
.........................................................AGAACUGUGUAUGGgCAUCAGU.................... len:22 al:1
.........................................................AGAACUGUGUAUGGACAUCAG..................... len:21 al:3
.........................................................AGAACUGUGUAUGGACAUC....................... len:19 al:68
.........................................................AGAACUGUGUAUGGACAUCAGUa................... len:23 al:1
.........................................................cGAACUGUGUAUGGACAUC....................... len:19 al:1