Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026853749.1:104192-104296 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_4396.ps.pdf
Locus Name: Cluster_4396
AAUUUUUGGUGUUGUUGUGAAGUGGAGAGAGUUUUAUCUCAUCAUCUUGGCCUAGCUUAGGGUGAGAUUCAACUCCUCCAACUGCAUGCAAUAUCAGUAGUCAGC
.(((.((((((((((.(((.(((((((.(((((..((((((((..((.(((...))).))))))))))..))))))))).))).))))))))))))).))).... (-38.40)
....................AGUGGAGAGAGUUUUAUCUCAUC.............................................................. len:23 al:1
....................AGUGGAGAGAGUUUUAUCUCAUu.............................................................. len:23 al:1
..............................................................UGAGAUUCAACUCCUCCAACc...................... len:21 al:1
..............................................................UGAGAUUCAACUCCUCCAACUGCA................... len:24 al:8
..............................................................UGAGAUUCAACUCCUCCAACUGuA................... len:24 al:1
..............................................................UGAGAUUCAACUCCUCCAACUGa.................... len:23 al:1
..............................................................UGAGAUUCAACUCCUCCAACUGCc................... len:24 al:1
..............................................................UGAGgUUCAACUCCUCCAACUGC.................... len:23 al:1
..............................................................UGAGAUUCAACUCCUCCAACUGC.................... len:23 al:47
..............................................................UGAGAUUCAACUCCUCCAACUGu.................... len:23 al:11
..............................................................UGAGAUUCAACUCCUCCAACUGCAa.................. len:25 al:4
..............................................................UGAGAUUCAACUCCUCCAACUGCAU.................. len:25 al:3
..............................................................UGAGAUUCAACUCCUCCAACUGCu................... len:24 al:2