Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026853363.1:213466-213568 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_3720.ps.pdf
Locus Name: Cluster_3720
GUGAUGGGAUCUGUAUGCAGCGAGAUAUGUUUGAUAUAUUUGGUGGGUAAAUUUGUUCUCCACCGAAUACCAAACAUAUCAAUGUUGCAGCAGAUACAGCUUC
........((((((.(((((((.((((((((((...(((((((((((...........))))))))))).))))))))))..)))))))))))))........ (-40.40)
..GAUGGGAUCUGUAgGCAGCG................................................................................. len:20 al:1
..GAUGGGAUCUGUuUGCAGCG................................................................................. len:20 al:1
....UGGGAUCUGUAUGCAGCa................................................................................. len:18 al:1
......................AGAUAUGUUUGAUAUAcUUGGU........................................................... len:22 al:1
......................AGgUAUGUUUGAUAUAUUUGGU........................................................... len:22 al:6
......................AGAUAUGUUUGAUAUAUUUGa............................................................ len:21 al:14
......................AGAUAUGUUcGAUAUAUUUGGUGG......................................................... len:24 al:2
......................AGAUAUGUUUGAUAUAcUUGGUG.......................................................... len:23 al:1
......................AGAcAUGUUUGAUAUAUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUcGAUAUAUUUGGU........................................................... len:22 al:3
......................gGAUAUGUUUGAUAUAUUUGG............................................................ len:21 al:1
......................AGAUAUGUUUGAUAUAUUUGGc........................................................... len:22 al:86
......................AGAUAUGUUUGAUAUAcUUGGUGG......................................................... len:24 al:2
......................AGAUAUGUUUGAUAUAUUUGGUGGuU....................................................... len:26 al:2
......................AGAcAUGUUUGAUAUAUUUGGUGG......................................................... len:24 al:1
......................AGAUAcGUUUGAUAUAUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUUaAUAUAUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUUGgUAUAUUUGG............................................................ len:21 al:1
......................AGAUAUGUUUGAUAUuUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUUGAUgUAUUUGGU........................................................... len:22 al:3
......................AGAUAUGUUUGAUAUAUUUGu............................................................ len:21 al:1
......................AGAUAUGUUUGAUAUAUUUGGUGGc........................................................ len:25 al:1
......................AGAUAUGUUUGAcAUAUUUGGUG.......................................................... len:23 al:1
......................AGAUAUGUUUGAUAUAUUUGGUu.......................................................... len:23 al:15
......................AGAUAUGUUUGAUAUAUcUGGU........................................................... len:22 al:1
......................AGAUAUGUUUGAUAUAUUUGGUa.......................................................... len:23 al:42
......................AGAUAUGUUUGAUcUAUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUUGAUAUAUUUGGa........................................................... len:22 al:36
......................AGAUAUGUUUGAUAUAUUUGaUG.......................................................... len:23 al:1
......................AGgUAUGUUUGAUAUAUUUGGUGG......................................................... len:24 al:1
......................AGAUAUGUUUGAUAUAUUUGGU........................................................... len:22 al:864
......................AGAUAcGUUUGAUAUAUUUGGUG.......................................................... len:23 al:3
......................AGAUAUGUUUGAUAUAUUUGGUGG......................................................... len:24 al:148
......................AGAUAUGUUUGAUAUAUUUGGUGGu........................................................ len:25 al:1
......................AGAUAUGUUUGAUAUAUUUGGUGu......................................................... len:24 al:40
......................AGAaAUGUUUGAUAUAUUUGGU........................................................... len:22 al:1
......................cGAUAUGUUUGAUAUAUUUGGUG.......................................................... len:23 al:2
......................gGAUAUGUUUGAUAUAUUUGGUGG......................................................... len:24 al:2
......................AGAUAUGUUUGAUAUAUUUG............................................................. len:20 al:2
......................AGAUAUGUUUGAUAUAUUUaGUG.......................................................... len:23 al:1
......................AGAUAUGUUUGAUAcAUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUUGcUAUAUUUGGUGG......................................................... len:24 al:1
......................AGAUAUGUUUGAUAUgUUUGGU........................................................... len:22 al:3
......................AGAgAUGUUUGAUAUAUUUGGU........................................................... len:22 al:5
......................AGAUAUGUUcGAUAUAUUUGGUG.......................................................... len:23 al:1
......................AGAUAUGUUUGAUAUAUUUGGg........................................................... len:22 al:11
......................AuAUAUGUUUGAUAUAUUUGGUG.......................................................... len:23 al:1
......................uGAUAUGUUUGAUAUAUUUGGU........................................................... len:22 al:2
......................AGAUAUGUUUGAUAcAUUUGGUGG......................................................... len:24 al:1
......................AGuUAUGUUUGAUAUAUUUGGU........................................................... len:22 al:1
......................AGAUgUGUUUGAUAUAUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUgGAUAUAUUUGGUG.......................................................... len:23 al:1
......................AGgUAUGUUUGAUAUAUUUGGUG.......................................................... len:23 al:2
......................AGAUAUGUcUGAUAUAUUUGGUGG......................................................... len:24 al:1
......................AGAUAUGUUUGAUAUAUUcGG............................................................ len:21 al:1
......................AGAUAUGgUUGAUAUAUUUGGU........................................................... len:22 al:1
......................AGAUAUGUUUGAUAUAUUUGGUGa......................................................... len:24 al:43
......................AGAUAUGUUUGAUAUAUUUGGUGGa........................................................ len:25 al:7
......................AGAcAUGUUUGAUAUAUUUGGUG.......................................................... len:23 al:1
......................AGAUAUGUUUGAUAUAUUUGG............................................................ len:21 al:107
......................AGAUAUGUUUGgUAUAUUUGGU........................................................... len:22 al:2
......................AGAUAUGaUUGAUAUAUUUGGUGG......................................................... len:24 al:1
......................AGAUAUGUUUGAUAUAUUUGGUGc......................................................... len:24 al:7
......................AGAUAUGUUUGAUAUAUUUGGUG.......................................................... len:23 al:285
......................AGAUAUGUUUGAUgUAUUUGGUGG......................................................... len:24 al:1
......................AGAUAUGUUUGAUAUAUUUaG............................................................ len:21 al:2
......................AGAUAUGUcUGAUAUAUUUGGU........................................................... len:22 al:1
......................cGAUAUGUUUGAUAUAUUUGGU........................................................... len:22 al:2
........................AgAUGUUUGAUAUAUUUGGUG.......................................................... len:21 al:2
........................AgAUGUUUGAUAUAUUUGGU........................................................... len:20 al:1
.........................UAUGUUUGAUAUAUUUGGc........................................................... len:19 al:1
..........................AUGUUUGAUAUAUUUGGUG.......................................................... len:19 al:1
.............................................................ACCGAAUACCAAACAUAUCAAa.................... len:22 al:1
.............................................................ACCGAAUACCAAACgUAUCAAUG................... len:23 al:1
.............................................................ACCGAAUACCuAACAUAUCAAUG................... len:23 al:2
.............................................................ACCGAAUACCAAACAUAUCAAU.................... len:22 al:9
.............................................................ACCGAAUACCAAACAUAUCAAcG................... len:23 al:2
.............................................................ACCGAAUACCAAACAUAUCAAUa................... len:23 al:10
.............................................................ACCuAAUACCAAACAUAUCAAUG................... len:23 al:1
.............................................................ACCGAAUACCAAACAUAUC....................... len:19 al:1
.............................................................ACCGAAUACCAAACAUAUCAgUG................... len:23 al:1
.............................................................ACCGAgUACCAAACAUAUCAAUG................... len:23 al:1
.............................................................ACCGAAUACCAAACAUAUCAAUG................... len:23 al:83
..............................................................CCGgAUACCAAACAUAUCAAUG................... len:22 al:2