Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026866981.1:192726-192825 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_32919.ps.pdf
Locus Name: Cluster_32919
AUAGUGAUUGAAAGCUAGGGUAUGAGUAUUACAUCAGGUACUGACUGUAUGUUUGUUCCGUACCUUAUGUGAUGUUCUUACUUUGUCUUGUCUGAAUCAA
....(((((..(((.(((((((.(((((((((((.((((((.(((.........)))..)))))).))))))))))).))))))).))).....))))). (-29.10)
......................UGAGUAUUACAUCAGGUACUG......................................................... len:21 al:18
......................UGAGUAUUACAUCAGGUACUGc........................................................ len:22 al:1
......................UGAuUAUUACAUCAGGUACUGA........................................................ len:22 al:1
......................UGAGUAUUACAUCAGGUgCUG......................................................... len:21 al:2
......................UGAGUAUUACAUCAGGUACU.......................................................... len:20 al:2
......................UGgGUAUUACAUCAGGUACUG......................................................... len:21 al:1
......................UGAGUAUUACAUCAGGUACUGAuU...................................................... len:24 al:1
......................UGAGUAUUACAUCAGGUACUGg........................................................ len:22 al:1
......................UGuGUAUUACAUCAGGUACUGA........................................................ len:22 al:2
......................UGAGUAUUACAUCAGGUACUGAC....................................................... len:23 al:1
......................UGAGUAUUcCAUCAGGUACUG......................................................... len:21 al:1
......................UGAGUAUUACAUCAGGUACUGAaU...................................................... len:24 al:2
......................UGAGUAUUACAUCAGGUACUGAa....................................................... len:23 al:7
......................UGAGUAUUACAUCAGGUACUGu........................................................ len:22 al:2
......................UGAGUAUUACAUCAGGUACUa......................................................... len:21 al:1
......................UGAGUAUUACAUCAGGUACUGA........................................................ len:22 al:63
..........................UAUUACAUCgGGUACUGA........................................................ len:18 al:1
..........................................................CGUACCUUAUGUGAUGUUCUU..................... len:21 al:13
..........................................................CGUACCUUAUGUGAUGUUCc...................... len:20 al:1
..........................................................CGUACCUUAUGUGAUGUUCU...................... len:20 al:3
..........................................................CGUACCUUAUGUGAUGUUCUUA.................... len:22 al:42
..........................................................CGUACCUUAUGUGAUGUUCUUAu................... len:23 al:2
..........................................................CGUACCUUAUGUGAUGUUC....................... len:19 al:1
..........................................................CGUACCUUAUGUGAUGUUCUUu.................... len:22 al:3