Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026866981.1:190572-190675 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_32918.ps.pdf
Locus Name: Cluster_32918
CAUGAGAUGGUUACUGUUUGUUUAAUCUCAGCUGGUAAUUCUGAGUAGACGAUUUAAGACCUCAAGUUACCAGCCGAGAUCAUACAAAUAUAACUACUAACAUC
....((.((((((.(((((((...(((((.((((((((((.((((...............)))))))))))))).)))))...)))))))))))))))...... (-34.20)
..UGAGAUGGUUACUGUUUGUU.................................................................................. len:20 al:7
..UGAGAUGGUUACUGUUUGUc.................................................................................. len:20 al:1
......................UAAUCUCAGaUGGUAAUUCUG............................................................. len:21 al:4
......................UAAUCUCAGCUGGUgAUUCUGAG........................................................... len:23 al:5
......................UAAUCUCAGCUGGUAAUUCUa............................................................. len:21 al:2136
......................UAAUCUCAGCUGaUAAUUCUG............................................................. len:21 al:19
......................UAAUCUCAGCUGGUAAcUCUGAG........................................................... len:23 al:5
......................UAAUCUCAGCUGGUAAUUCUGAG........................................................... len:23 al:2103
......................UAAUCUCAGuUGGUAAUUCUGAG........................................................... len:23 al:2
......................UAAcCUCAGCUGGUAAUUCUGAG........................................................... len:23 al:7
......................UAcUCUCAGCUGGUAAUUCUG............................................................. len:21 al:12
......................UAAUCUCAGgUGGUAAUUCU.............................................................. len:20 al:1
......................UuAUCUCAGCUGGUAAUUCUG............................................................. len:21 al:3
......................UAAUCUCAGCUGGUAcUUCUGA............................................................ len:22 al:2
......................UAgUCUCAGCUGGUAAUUCUGAG........................................................... len:23 al:8
......................UAAUCUCAGCUGGUAAUUCgG............................................................. len:21 al:29
......................UcAUCUCAGCUGGUAAUUCUG............................................................. len:21 al:8
......................UAAUCaCAGCUGGUAAUUCUGAG........................................................... len:23 al:2
......................UAAUCUCAGCUuGUAAUUCUGA............................................................ len:22 al:2
......................UAAUCUCAGCUGGUAAUUgUGA............................................................ len:22 al:3
......................UAAUCUCAGCUGGUAAUUCUGAc........................................................... len:23 al:5
......................UAAUCUCAGCUGGUAAcUCUGA............................................................ len:22 al:5
......................UAAUCUCAGCUGGUAAUUCa.............................................................. len:20 al:32
......................UAAUCUCAGCUcGUAAUUCUGA............................................................ len:22 al:1
......................UAAUCUCAGgUGGUAAUUCUGA............................................................ len:22 al:2
......................UAAUCUCAGgUGGUAAUUCUGAG........................................................... len:23 al:1
......................UAAcCUCAGCUGGUAAUUCU.............................................................. len:20 al:3
......................UAAUCUCAGCUGGcAAUUCU.............................................................. len:20 al:1
......................UAcUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:3
......................UAAUCUCAGCUGGUAAUUCgGAG........................................................... len:23 al:1
......................UAAUCUCAGCUGGUAgUUCUG............................................................. len:21 al:50
......................UAAUCUCAGCUGGUAAUUCc.............................................................. len:20 al:92
......................UAAUCUaAGCUGGUAAUUCUGA............................................................ len:22 al:1
......................UAAUCUCAGCUGGUAAUUCUaAG........................................................... len:23 al:1
......................UAAUCUCAuCUGGUAAUUCUG............................................................. len:21 al:1
......................UAAUCUCAGCUGGgAAUUCU.............................................................. len:20 al:2
......................UAAUCUCAGCUGGUgAUUCUGA............................................................ len:22 al:15
......................UAAUCUCAaCUGGUAAUUCUG............................................................. len:21 al:16
......................UAAUCcCAGCUGGUAAUUCUGA............................................................ len:22 al:20
......................UAAUCUCgGCUGGUAAUU................................................................ len:18 al:1
......................UAAUCUCAGCcGGUAAUUCUGA............................................................ len:22 al:17
......................UAAUCUCAGCUGGgAAUUCUGAG........................................................... len:23 al:1
......................UAAUCUCAuCUGGUAAUUCUGAG........................................................... len:23 al:2
......................UAAUCaCAGCUGGUAAUUCUG............................................................. len:21 al:7
......................UAAUCUCAaCUGGUAAUUCUGA............................................................ len:22 al:5
......................UAAUCUCAGCUGGUAAUUCUGc............................................................ len:22 al:12
......................UAAUCUaAGCUGGUAAUUCUG............................................................. len:21 al:4
......................UAAUCaCAGCUGGUAAUUCUGA............................................................ len:22 al:1
......................UAAUCUCAGCUGGUAAUUCUGAGUAGACGu.................................................... len:30 al:6
......................UAAUuUCAGCUGGUAAUUCUG............................................................. len:21 al:9
......................UAAUCUCAGCUGaUAAUUCUGA............................................................ len:22 al:6
......................UAAUCUCAGCUGGUAAUUuUG............................................................. len:21 al:14
......................UAAUCUCAGCUGGUuAUUCUG............................................................. len:21 al:1
......................UAAUCUCAGCUGGUAAUcCU.............................................................. len:20 al:3
......................UAAUCUCAGCUGGUAAUUCaGAG........................................................... len:23 al:1
......................UgAUCUCAGCUGGUAAUUCUG............................................................. len:21 al:53
......................UAAUCUCAGgUGGUAAUUCUG............................................................. len:21 al:7
......................UgAUCUCAGCUGGUAAUUCU.............................................................. len:20 al:2
......................UAAUCUCAGCUGGUAAUUCg.............................................................. len:20 al:7
......................UAAUCUCAGCUGGUAAUUaUG............................................................. len:21 al:2
......................UAAUCUCAGCUGGUAAUaCUGAG........................................................... len:23 al:2
......................UAAUCUCAGCaGGUAAUUC............................................................... len:19 al:1
......................UAAUCcCAGCUGGUAAUUCUG............................................................. len:21 al:61
......................UAAUgUCAGCUGGUAAUUCUG............................................................. len:21 al:1
......................UAAUCUCAGCUaGUAAUUCUG............................................................. len:21 al:12
......................UAAUCUCgGCUGGUAAUUCU.............................................................. len:20 al:15
......................UAAUCUCAGCUGGUAuUUCUG............................................................. len:21 al:5
......................UAAUCUCAGCUGGUAAUgCUG............................................................. len:21 al:1
......................UAAUCUCAGCUGuUAAUUCUGA............................................................ len:22 al:1
......................UAAUCUCAGCUGGUAAUUCUGg............................................................ len:22 al:48
......................UAAUCUCAGCUGGUAAUcCUGA............................................................ len:22 al:6
......................UAAUCUCAGCUGGUAAUUCaG............................................................. len:21 al:15
......................UAAUCUCAGCUGGUAAUaCUG............................................................. len:21 al:2
......................UAAUCcCAGCUGGUAAUUCUGAG........................................................... len:23 al:12
......................UAAgCUCAGCUGGUAAUUCUG............................................................. len:21 al:3
......................UAAUgUCAGCUGGUAAUUCUGA............................................................ len:22 al:1
......................UAAUCUCAGCUGGUAAcUCUG............................................................. len:21 al:26
......................UAAUuUCAGCUGGUAAUUCUGA............................................................ len:22 al:3
......................UAAUCUCAGCUGGUAAUUCUGcG........................................................... len:23 al:2
......................UAAUCUCAGCUGGUAAUUCUGAGUu......................................................... len:25 al:1
......................UAAUCUCAGCUGGUAAUUCcGAG........................................................... len:23 al:3
......................UAAUCUuAGCUGGUAAUUCUGA............................................................ len:22 al:4
......................UAAUCUCAGCUGGcAAUUCUGAG........................................................... len:23 al:4
......................UAAUCUCAGCUaGUAAUUCUGAG........................................................... len:23 al:1
......................UAAUCUCAGCUGGUAA.................................................................. len:16 al:1
......................UAAUCUCAGCgGGUAAUUCUG............................................................. len:21 al:5
......................UAuUCUCAGCUGGUAAUUCUG............................................................. len:21 al:2
......................UAAUCUCAGCUGGUAuUUCUGAG........................................................... len:23 al:2
......................UAAUCUCAGCUGGUAcUUCUG............................................................. len:21 al:4
......................UAAUCUCAGCUuGUAAUUCU.............................................................. len:20 al:2
......................UAAUCUCAaCUGGUAAUUCUGAG........................................................... len:23 al:1
......................UAAUCUCAGCUGGcAAUUCUGA............................................................ len:22 al:7
......................UAAaCUCAGCUGGUAAUUCUG............................................................. len:21 al:4
......................UAAUCUCAGCUGGUuAUUCUGAG........................................................... len:23 al:1
......................UAAUCUCAGCUGGcAAUUCUG............................................................. len:21 al:29
......................UAAUaUCAGCUGGUAAUUCUG............................................................. len:21 al:1
......................UAAUCUCAGCUGGUAAUUCUGAuU.......................................................... len:24 al:2
......................UAAUCUCAGCUGGUgAUUCU.............................................................. len:20 al:2
......................UAAUCUuAGCUGGUAAUUCUG............................................................. len:21 al:8
......................UAAUCUCAGCaGGUAAUUCUGA............................................................ len:22 al:6
......................UAAUCgCAGCUGGUAAUUCUG............................................................. len:21 al:2
......................UAAUCUCAGaUGGUAAUUCUGAG........................................................... len:23 al:2
......................UAAUCUCAGCUGGUAAUUC............................................................... len:19 al:11
......................UAAUCUCgGCUGGUAAUUCUGAGU.......................................................... len:24 al:6
......................aAAUCUCAGCUGGUAAUUCUG............................................................. len:21 al:5
......................UAAUCUCgGCUGGUAAUUCUGA............................................................ len:22 al:459
......................UAAUCUCcGCUGGUAAUUCUG............................................................. len:21 al:7
......................UAAUCUCgGCUGGUAAUUCUG............................................................. len:21 al:738
......................UAAUCUCAGCUGGUAuUUCUGA............................................................ len:22 al:1
......................UAAUCUCAGCUGGUAAUUCUaA............................................................ len:22 al:3
......................cAAUCUCAGCUGGUAAUUCUGAG........................................................... len:23 al:6
......................UAAUCUCAGCUGGUgAUUCUG............................................................. len:21 al:49
......................UAAUCUCAGCUGGUAAUU................................................................ len:18 al:2
......................UAAUCUCAGCUGGUAAUUCUGAu........................................................... len:23 al:14
......................UAAUuUCAGCUGGUAAUUCU.............................................................. len:20 al:1
......................UAAUCUCAGCaGGUAAUUCUGAG........................................................... len:23 al:3
......................UAAUCUCAcCUGGUAAUUCUG............................................................. len:21 al:1
......................UAAUCUCAGCUGGUAAUUCUGAGa.......................................................... len:24 al:11
......................UAAUCUCAGCUGGgAAUUCUGA............................................................ len:22 al:8
......................UAAcCUCAGCUGGUAAUUCUGA............................................................ len:22 al:24
......................UAAUCUCAGuUGGUAAUUCUG............................................................. len:21 al:22
......................UAAUCUCAGCUGGUAAUUCcGA............................................................ len:22 al:11
......................UAAUCUCAGCUGGUAAUUCUu............................................................. len:21 al:133
......................UAAUCUCAGCUGGUAAUUCUGuG........................................................... len:23 al:2
......................UgAUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:17
......................UAgUCUCAGCUGGUAAUUCU.............................................................. len:20 al:1
......................UAAUCUCAGCUGGUAgUUCUGAG........................................................... len:23 al:3
......................UAAUCUCAGCcGGUAAUUCUG............................................................. len:21 al:55
......................UAAUCUCAGCUGGUcAUUCUG............................................................. len:21 al:4
......................cAAUCUCAGCUGGUAAUUCU.............................................................. len:20 al:3
......................UAAUCUCAGCUGGUAAUUCUc............................................................. len:21 al:37
......................UAAUCUCAGCUGGUAAUUCUGAGU.......................................................... len:24 al:9
......................UAAUCUCAGCUGGUAAUUgUGAG........................................................... len:23 al:1
......................UAAUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:5842
......................cAAUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:16
......................UAAUCUCAGCUGGUAAUcCUGAG........................................................... len:23 al:6
......................UAAUCUCAGCUGGUcAUUCUGA............................................................ len:22 al:1
......................UAAUCUCAGCUGGUAcUUCUGAG........................................................... len:23 al:2
......................UAAUCUCuGCUGGUAAUUCUGA............................................................ len:22 al:3
......................UAAUCUCAGCUGGUAAUcCUG............................................................. len:21 al:62
......................UAAUCUCAGCUGGUAAUUCUGu............................................................ len:22 al:79
......................UAAUCUCAGCUaGUAAUUCU.............................................................. len:20 al:1
......................UAAUCaCAGCUGGUAAUUCU.............................................................. len:20 al:1
......................UAAUCUCAGCaGGUAAUUCU.............................................................. len:20 al:1
......................UgAUCUCAGCUGGUAAUUCUGAG........................................................... len:23 al:6
......................UAAUCUCAGuUGGUAAUUCUGA............................................................ len:22 al:10
......................UAAUCUCAGCUGGUAgUUCUGA............................................................ len:22 al:21
......................UuAUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:2
......................UAAUCUCAGCUGGUAAUUCUGAa........................................................... len:23 al:185
......................UAgUCUCAGCUGGUAAUUCUG............................................................. len:21 al:57
......................UAgUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:16
......................UAAUCUCAGCUGGUAAUUCaGA............................................................ len:22 al:3
......................UcAUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:2
......................UAAUCUCAGCUGGUAAUUCcG............................................................. len:21 al:84
......................UAAUCUuAGCUGGUAAUUCUGAG........................................................... len:23 al:8
......................UAAUCUCAGCUGGUAAUUCU.............................................................. len:20 al:785
......................cAAUCUCAGCUGGUAAUUCUG............................................................. len:21 al:53
......................UAAUCUCAGCUGGUAAUUCUGgG........................................................... len:23 al:11
......................UAAUCUCAGCUGGUAAUUCUuAG........................................................... len:23 al:2
......................UAAUCUCAGCUGGUuAUUCUGA............................................................ len:22 al:2
......................UAAUCUCAGCUGGUAAUUuUGA............................................................ len:22 al:3
......................UAAUCUCAGCUGGUAAgUCU.............................................................. len:20 al:1
......................UAAUCUCAGCUGcUAAUUCUG............................................................. len:21 al:1
......................UAAUCUCAGCUGGUAAUUuUGAG........................................................... len:23 al:5
......................UAAUCUCAGCUGuUAAUUCUG............................................................. len:21 al:2
......................UAAUCUCgGCUGGUAAUUCUGAGUAGACGA.................................................... len:30 al:1
......................UAAUCUCAGCUuGUAAUUCUG............................................................. len:21 al:7
......................UAAUCUCgGCUGGUAAUUCUGAG........................................................... len:23 al:12974
......................UAAUCUCuGCUGGUAAUUCUGAG........................................................... len:23 al:2
......................UAAUCUCAGCcGGUAAUUCUGAG........................................................... len:23 al:8
......................UAAcCUCAGCUGGUAAUUCUG............................................................. len:21 al:59
......................UAAUCUCcGCUGGUAAUUCUGA............................................................ len:22 al:4
......................UAAUCUCAGCUGGaAAUUCUGA............................................................ len:22 al:2
......................UAAUCUCAGCUGGUAAgUCUG............................................................. len:21 al:1
......................UAAUCUCAGCUGGUAAUUgUG............................................................. len:21 al:4
......................UAAUCUCAGCUGGUAAUUCUcAG........................................................... len:23 al:1
......................UAAUCUCAGCUGGUAAUUgU.............................................................. len:20 al:2
......................UAAUCUCAGCUGGUAAcUCU.............................................................. len:20 al:1
......................UAAUCUCAGCUGGUAAUUCUGAaU.......................................................... len:24 al:4
......................UAAUCUCAGCUGGgAAUUCUG............................................................. len:21 al:13
......................UAAUCUCAGCUGGUAAUUCUG............................................................. len:21 al:21278
......................UAAUCUCgGCUGGUAAUUC............................................................... len:19 al:1
......................UAAUCcCAGCUGGUAAUUCU.............................................................. len:20 al:3
......................UAAUCUCuGCUGGUAAUUCUG............................................................. len:21 al:18
......................UAuUCUCAGCUGGUAAUUCUGA............................................................ len:22 al:2
......................UAAUCUCAGCUGGUAgUUCU.............................................................. len:20 al:2
......................UAAUCUCAGCUaGUAAUUCUGA............................................................ len:22 al:8
......................UAAUCUCAGCaGGUAAUUCUG............................................................. len:21 al:10
.......................AgUCUCAGCUGGUAAUUCUGA............................................................ len:21 al:1
.......................uAUCUCAGCUGGUAAUUCUG............................................................. len:20 al:1
.......................AAUCUCAGCUGGUAAUUCUGAG........................................................... len:22 al:1
.......................AAUCUCgGCUGGUAAUUCUGAG........................................................... len:22 al:1
.......................uAUCUCAGCUGGUAAUUCUGAG........................................................... len:22 al:2
.......................AAUCUCAGCUGGUAAUUCUGA............................................................ len:21 al:3
.......................AAUCUCAGCUGGUAAUUCcG............................................................. len:20 al:1
.......................AAUCUCAGCUGGUAAUUCUG............................................................. len:20 al:7
.......................AAUCUCgGCUGGUAAUUCUG............................................................. len:20 al:1
........................AUCUCAGCUGGUAAUUCUG............................................................. len:19 al:5
........................AUCUCgGCUGGUAAUUCUGAG........................................................... len:21 al:3
.........................UCUCAGCUGGUAAUUCUG............................................................. len:18 al:2
.........................UCUCAGCUGGUAAUUCUa............................................................. len:18 al:1
..........................CUCgGCUGGUAAUUCUGAG........................................................... len:19 al:1
..........................CUCAGCUGGUAAUUCUGA............................................................ len:18 al:2
...........................UCgGCUGGUAAUUCUGAG........................................................... len:18 al:4
...........................UCAGCUGGUAAUUCUGAG........................................................... len:18 al:2
...........................UCAGCUGGUAAUUCUGAGa.......................................................... len:19 al:1
............................CAGCUGGUAAUUCUG............................................................. len:15 al:1
..............................................................CAAGUUACCAGCCGgGAUCAUA.................... len:22 al:1
..............................................................CAAGUUACCAGCCGAGAUCAUAa................... len:23 al:1
..............................................................CAAGUUACCAuCCGAGAUCAUA.................... len:22 al:1
..............................................................CAAGUUACCAGCCGAGAUCAUA.................... len:22 al:3
..............................................................CAAGUUACCAGCCGAGAUCAU..................... len:21 al:3