Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026866981.1:188793-188892 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_32917.ps.pdf
Locus Name: Cluster_32917
CUUUAAAAUUUGUUUGGUUGUUUAAUAUCAGCUGGUAAUCCUGAGUGUUCUCUAGUCUCAGGCUGUCAGUUGAUAUUGUACAAACAGACAGACAAACAAC
........((((((((..(((.(((((((((((((((..((((((...........)))))).))))))))))))))).)))..))))))))........ (-35.40)
......................UAAUAUCgGCUGGUAAUCCUGAG....................................................... len:23 al:4
......................UgAUAUCAGCUGGUAAUCCUGA........................................................ len:22 al:1
......................UAAUAUCAGCUGGUAAUCCUG......................................................... len:21 al:58
......................UAAUAUCAGCUGGUAAUCCUGu........................................................ len:22 al:1
......................UAAUAUCAGCUGGUAAUCCUGAa....................................................... len:23 al:13
......................UAAUAUCAGCUGGUAAUCCUGAGa...................................................... len:24 al:34
......................UAuUAUCAGCUGGUAAUCCUGAGU...................................................... len:24 al:1
......................UAAUAUCAGCUGGUAAUCC........................................................... len:19 al:1
......................UAAUAUCAGCUGGUAAUCCUGAGc...................................................... len:24 al:4
......................UAAUAUCAGCUGGUAAUCCUGg........................................................ len:22 al:3
......................UAAUAUCAGCUGGUAAUCCU.......................................................... len:20 al:1
......................UAAUAUCAGCUGGUAAUCCUGA........................................................ len:22 al:107
......................UAAUAUCAGCUGGcAAUCCUGA........................................................ len:22 al:1
......................UAAUAUCAGCUGGUAAUCCUGAGU...................................................... len:24 al:19
......................cAAUAUCAGCUGGUAAUCCUG......................................................... len:21 al:1
......................aAAUAUCAGCUGGUAAUCCUGAG....................................................... len:23 al:1
......................UAAUAUCAGCUGGUAAcCCUGA........................................................ len:22 al:1
......................UAAUAUCAGuUGGUAAUCCUGAG....................................................... len:23 al:1
......................UAAUAUCAGCUGGUAAUCCUGAG....................................................... len:23 al:164
......................UAAUAUCAGCUGGUAAUCCUGAGg...................................................... len:24 al:1
......................UAAUAUCAGCUGGUAAcCCUGAG....................................................... len:23 al:2
......................UAAUAUCAGCUGGUAAUCCUGAu....................................................... len:23 al:1
......................UAAUAUCAGCUGGUAAUCCUGgG....................................................... len:23 al:2
......................UAAUAUCAGCUGGUAAUCCUa......................................................... len:21 al:3
......................UAAUAUCgGCUGGUAAUCCUGA........................................................ len:22 al:22
......................UAgUAUCAGCUGGUAAUCCUGAG....................................................... len:23 al:1
......................UAAUgUCAGCUGGUAAUCCUGAG....................................................... len:23 al:1
......................UAgUAUCAGCUGGUAAUCCUGA........................................................ len:22 al:2
......................UAAUAUCAGCUGGUAAUCCc.......................................................... len:20 al:1
......................UAAUAUCgGCUGGUAAUCCUG......................................................... len:21 al:1
......................UAAUAUCAGCUGGUAAUCCUGc........................................................ len:22 al:1
.........................UAUCAGCUGGUAAUCCUGA........................................................ len:19 al:1
..........................................................CAGGCUGUCAGUUGAUAUUGU..................... len:21 al:1
..........................................................CAGGCUGUCAGUUGAUAUUGUA.................... len:22 al:1