Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026866516.1:336376-336477 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_31844.ps.pdf
Locus Name: Cluster_31844
AUUUUUUCGGGGUUUGAUGCCAUCUUACUUGAUAGCAUUAGGCUGGGACGCCUGAUCUAAUACUGUCAGGUAAAGAUGUCCGCAGAUCUCGACCACUUCGAA
......((((((((((..(.(((((((((((((((.(((((((.((....)).).)))))).))))))))).)))))).)..)))))))))).......... (-38.30)
.UUUUUUCGGGGUUcGAUGC.................................................................................. len:19 al:1
.UUUUUUCGGGGUUUGAUGC.................................................................................. len:19 al:11
.UUUUUUCGGGGUUUGAUGu.................................................................................. len:19 al:6
....................CAUCUUACUUGAUAGCAUUAGa............................................................ len:22 al:3
....................CAUCUUACUUGAUAGCAUUAGu............................................................ len:22 al:1
....................CAUCUUACUUGAUAGCAUUA.............................................................. len:20 al:1
....................CAUCUUACUUGAUAGCAUUAGGa........................................................... len:23 al:1
....................CAUCUUACUUGAUAGCAUUAGG............................................................ len:22 al:26
....................CAUCUUACUUGAUAGCAUU............................................................... len:19 al:2
.........................UACUUGAUAGCAUUAGGCUGGGA...................................................... len:23 al:1
....................................................UGAUCUAAUACUGUCAGGUAAA............................ len:22 al:1
........................................................CUAAUACUGUCAGGUAAAGAUGUC...................... len:24 al:1
.........................................................UAAUACUGUCAGGUAAcGAUGUC...................... len:23 al:6
.........................................................UgAUACUGUCAGGUAAAGAUGU....................... len:22 al:21
.........................................................UgAUACUGUCAGGUAAAGAUG........................ len:21 al:2
.........................................................UAAUACUGUCAGGUAAAGAUcU....................... len:22 al:4
.........................................................UAAUACUGUCAGGUAAgGAUGU....................... len:22 al:64
.........................................................cAAUACUGUCAGGUAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUACcGUCAGGUAAAG........................... len:18 al:2
.........................................................UAAUACUGcCAGGUAAAGAUGUCC..................... len:24 al:3
.........................................................UAAUACUGUCAGGUAAAGAUGg....................... len:22 al:66
.........................................................UAAUACUGUCAGGgAAAGAUGU....................... len:22 al:5
.........................................................UAAUACcGUCAGGUAAAGAUGUC...................... len:23 al:56
.........................................................UAAUAuUGUCAGGUAAAGAUGU....................... len:22 al:5
.........................................................aAAUACUGUCAGGUAAAGAUGUC...................... len:23 al:4
.........................................................UAAUACUGUuAGGUAAAGAUGU....................... len:22 al:10
.........................................................UAAUACUGUaAGGUAAAGAUGUC...................... len:23 al:1
.........................................................UAAUACUGUCAGGUAAAGAUa........................ len:21 al:68
.........................................................UAAUACaGUCAGGUAAAGAUGUC...................... len:23 al:12
.........................................................UAAcACUGUCAGGUAAAGAUGUCC..................... len:24 al:2
.........................................................UAcUACUGUCAGGUAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUACUGUCAGGUAcAGAUGU....................... len:22 al:1
.........................................................UgAUACUGUCAGGUAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUACUGaCAGGUAAAGAUGUC...................... len:23 al:4
.........................................................UAAUACUGUCAGGUcAAGAUGU....................... len:22 al:4
.........................................................UAAUACUGUCAGGUAAAGgUGUC...................... len:23 al:53
.........................................................UAAUACUGUCAGGUAAuGAUGUC...................... len:23 al:4
.........................................................UAAUACUGUCuGGUAAAGAUGU....................... len:22 al:9
.........................................................UAAUACUGUCAGGUAAAGAcGUC...................... len:23 al:34
.........................................................UAAUACcGUCAGGUAAAGAUG........................ len:21 al:2
.........................................................UAAUACUGUCAGGUAg............................. len:16 al:2
.........................................................UAgUACUGUCAGGUAAAGAUGUC...................... len:23 al:51
.........................................................UAAUACaGUCAGGUAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUACUGUCAGGUAAAGAUGa....................... len:22 al:112
.........................................................UAAUACUGUCAGGcAAAGAUGUC...................... len:23 al:24
.........................................................UAAUACUGgCAGGUAAAGAUGUC...................... len:23 al:1
.........................................................UAcUACUGUCAGGUAAAGAUGUC...................... len:23 al:5
.........................................................UAAUACUGUuAGGUAAAGAUG........................ len:21 al:1
.........................................................UAAUACUGUCAGGUAAAGAUGUC...................... len:23 al:14451
.........................................................UAAUACUGUCAGGUAcAGAUGUC...................... len:23 al:5
.........................................................UAAUACUGUCAGGUgAAGAUGU....................... len:22 al:19
.........................................................UAAUACUGUCAGGUAAAuAUGUC...................... len:23 al:2
.........................................................UAuUACUGUCAGGUAAAGAUGU....................... len:22 al:3
.........................................................UAAaACUGUCAGGUAAAGAUG........................ len:21 al:1
.........................................................UAAUACUGcCAGGUAAAG........................... len:18 al:1
.........................................................UAAUACcGUCAGGUAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUcCUGUCAGGUAAAGAUGU....................... len:22 al:4
.........................................................cAAUACUGUCAGGUAAAGAUG........................ len:21 al:4
.........................................................UAAUACUGUCgGGUAAAGAUGU....................... len:22 al:38
.........................................................UAuUACUGUCAGGUAAAGAUGUC...................... len:23 al:6
.........................................................UAAUACUGUCAGGUAAAGAgGU....................... len:22 al:4
.........................................................UAAUACUGUCAGGUAAAGAUGcC...................... len:23 al:50
.........................................................UcAUACUGUCAGGUAAAGAUGUC...................... len:23 al:3
.........................................................UAgUACUGUCAGGUAAAGAUG........................ len:21 al:1
.........................................................UAAUACUGUCAGGUAAAGAUGcCC..................... len:24 al:2
.........................................................UAAUACUGcCAGGUAAAGAUGU....................... len:22 al:36
.........................................................UAAUACUGUCAGGUAAAaAUGUC...................... len:23 al:11
.........................................................UAAUACUGUCAGGUAgAGAUGUCC..................... len:24 al:1
.........................................................UAAUACUGUCAGGUAAAGAUaU....................... len:22 al:5
.........................................................UAAUgCUGUCAGGUAAAGA.......................... len:19 al:2
.........................................................UAAUACUGUCcGGUAAAGAUGUC...................... len:23 al:5
.........................................................UAAUACUGUCAGGUAAAGAUGUCa..................... len:24 al:1295
.........................................................UAAcACUGUCAGGUAAAGAUGUC...................... len:23 al:20
.........................................................UAAUcCUGUCAGGUAAAGAUGUC...................... len:23 al:5
.........................................................UAAUACUGUCAGGgAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUACUGUCAGGUAAAaAUGU....................... len:22 al:2
.........................................................UAAUAaUGUCAGGUAAAGAUGU....................... len:22 al:4
.........................................................cAAUACUGUCAGGUAAAGAUGUC...................... len:23 al:45
.........................................................UAAUACUGUgAGGUAAAGAUGU....................... len:22 al:1
.........................................................UAAUACUGUCAGGUAAAGAc......................... len:20 al:2
.........................................................UAAUACUGUCcGGUAAAGAU......................... len:20 al:1
.........................................................UAAUgCUGUCAGGUAAAGAUGUCC..................... len:24 al:14
.........................................................UAAgACUGUCAGGUAAAGAUGUC...................... len:23 al:3
.........................................................UAAUACUGUCAGGUAAAGAUaUC...................... len:23 al:5
.........................................................UAAUACUGUCAGGUAAAGAUGUuC..................... len:24 al:2
.........................................................UAAUACUGUCAGGUAA............................. len:16 al:9
.........................................................cAAUACUGUCAGGUAAAGAUGU....................... len:22 al:23
.........................................................aAAUACUGUCAGGUAAAGAUGU....................... len:22 al:4
.........................................................UAAUgCUGUCAGGUAAAGAUGU....................... len:22 al:336
.........................................................UAAUACUGUCAGGUAAAGAU......................... len:20 al:28
.........................................................UAAUACUGUCAGGcAAAGAUGU....................... len:22 al:18
.........................................................UAAUACUGUCAGGUAAAGAgGUC...................... len:23 al:4
.........................................................UAAUACUGUCAGGUAAAcAUGU....................... len:22 al:1
.........................................................UAAUACUGUCAaGUAAAGAUGU....................... len:22 al:13
.........................................................UAAUACUGUCAGGUAAuGAUGU....................... len:22 al:6
.........................................................UAAUACUGUCAaGUAAAGAUGUC...................... len:23 al:7
.........................................................UAAUACUGUCAGGUAAAGcUGU....................... len:22 al:3
.........................................................UAAUACUGUCAuGUAAAGAUGUC...................... len:23 al:4
.........................................................UAAUACcGUCAGGUAAAGAUGU....................... len:22 al:26
.........................................................UAAUACUGUCAGGUAAgGAUG........................ len:21 al:2
.........................................................UAAUACUGUCAGGUAAAGAUGc....................... len:22 al:1056
.........................................................UAAUACUGUCAGGUAAAGAcGUCC..................... len:24 al:3
.........................................................UAAUACUGUCAGGUAcAGAUG........................ len:21 al:1
.........................................................UAAUACUGUCAGaUAAAG........................... len:18 al:1
.........................................................UAAUACUGUCAGGUAuAGAUGU....................... len:22 al:1
.........................................................UAAUACUGUCAGGUAuAGAUGUC...................... len:23 al:1
.........................................................UAAUACUGUCAGGUAAAGgUGUCC..................... len:24 al:1
.........................................................gAAUACUGUCAGGUAAAGAUGUC...................... len:23 al:1
.........................................................UAAUACUGUCAGGUAAAGAUGUCCu.................... len:25 al:1
.........................................................UAAUACUGUCAGGUAAAGcUG........................ len:21 al:1
.........................................................UAcUACUGUCAGGUAAAGAUGU....................... len:22 al:1
.........................................................UAAUACgGUCAGGUAAAGAUGU....................... len:22 al:2
.........................................................UAAUACUGUCAGGUAAAGgUG........................ len:21 al:5
.........................................................UAAUACUGUCAGGUAAAGAUGUu...................... len:23 al:1195
.........................................................UuAUACUGUCAGGUAAAGAUGU....................... len:22 al:2
.........................................................UAAUACUGUCAGGcAAAGAUG........................ len:21 al:2
.........................................................UAAUACUGUCAGGUAAAGAUGU....................... len:22 al:8865
.........................................................UAAUACUGUCAGcUAAAGAUGU....................... len:22 al:1
.........................................................UAAUACUGUCAGGUAAAG........................... len:18 al:43
.........................................................UAAUACUGUCAGGUAAAGAcGU....................... len:22 al:14
.........................................................UAAUAaUGUCAGGUAAAGAUGUC...................... len:23 al:2
.........................................................UAAUACUGUCAGGUAAgGAUGUCC..................... len:24 al:2
.........................................................UAAUACUGUCuGGUAAAGAUGUC...................... len:23 al:7
.........................................................UAAUACUGUCAGGUAAAGcUGUCC..................... len:24 al:1
.........................................................UAAUACUGUgAGGUAAAGAUGUC...................... len:23 al:3
.........................................................UuAUACUGUCAGGUAAAGAUGUC...................... len:23 al:4
.........................................................UAAUACUGcCAGGUAAAGAUG........................ len:21 al:3
.........................................................UAAUgCUGUCAGGUAAAGAUGUC...................... len:23 al:1883
.........................................................UAAUACUGUCAGGUAAcGAUGU....................... len:22 al:4
.........................................................UAAUACUGUCAGGUAAAGA.......................... len:19 al:4
.........................................................UAAUACUGUCAGGUAAAGAUGUCuG.................... len:25 al:1
.........................................................UAAUACUGUCAGGgAAAGAUGUC...................... len:23 al:13
.........................................................UAAUuCUGUCAGGUAAAGAUGUC...................... len:23 al:5
.........................................................UAAUACUGUCAGGUAgAGAUGU....................... len:22 al:29
.........................................................UAAUACUGUCAGGUAgAGAUG........................ len:21 al:1
.........................................................UAAUACUGUCAGGUgAAGAUGUC...................... len:23 al:40
.........................................................UAAUACUGUCAGGUAAAGAUGUCaGC................... len:26 al:1
.........................................................UAAUACUGUgAGGUAAAGAUG........................ len:21 al:1
.........................................................UAAUACUGUCgGGUAAAGAUG........................ len:21 al:6
.........................................................UAAUACUGUuAGGUAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUACUGUCAGGUAAAGAUGUCu..................... len:24 al:3398
.........................................................UgAUACUGUCAGGUAAAGAUGUC...................... len:23 al:40
.........................................................UAAUACUGUCAGGUAAAGAUu........................ len:21 al:2
.........................................................UAAUgCUGUCAGGUAAAGAU......................... len:20 al:3
.........................................................UAgUACUGUCAGGUAAAGAUGUCC..................... len:24 al:2
.........................................................UAAUuCUGUCAGGUAAAGAUG........................ len:21 al:1
.........................................................UAAUAuUGUCAGGUAAAGAUG........................ len:21 al:2
.........................................................UAAUACUGUCgGGUAAAGAUGUCC..................... len:24 al:6
.........................................................UAAUgCUGUCAGGUAAAG........................... len:18 al:7
.........................................................UAAgACUGUCAGGUAAAGAUGU....................... len:22 al:3
.........................................................UAAUACUaUCAGGUAAAGAUGUC...................... len:23 al:3
.........................................................UAAUACUGUCAGGUcAAGAUGUC...................... len:23 al:3
.........................................................UAAUACUGcCAGGUAAAGAUGUC...................... len:23 al:39
.........................................................UAAUACUGUCAGGUgAAGAUG........................ len:21 al:2
.........................................................UAAUACUGUCAGGUAgAGAUGUC...................... len:23 al:53
.........................................................UAAUACUGUCAGGUAAAGuUGU....................... len:22 al:4
.........................................................UAgUACUGUCAGGUAAAGA.......................... len:19 al:1
.........................................................UAAUACUGUCAGGUAgAG........................... len:18 al:1
.........................................................UAAUACUGUCAGGUAAAGAUGUCaG.................... len:25 al:9
.........................................................UAAUgCUGUCAGGUAAAGAUG........................ len:21 al:30
.........................................................UAAUACUGUCAGGUAAAGAUGUaC..................... len:24 al:2
.........................................................UAAUACUGUCAGGUAAAGAUGaC...................... len:23 al:6
.........................................................UAAUACUGUCAGGUAAgGAUGUC...................... len:23 al:109
.........................................................UcAUACUGUCAGGUAAAGAUGU....................... len:22 al:2
.........................................................UAAUACUGUCAGGUAAAGAUGUg...................... len:23 al:10
.........................................................UAAUACUGUCAGGUAAAGuUGUC...................... len:23 al:2
.........................................................UAAcACUGUCAGGUAAAGAUGU....................... len:22 al:16
.........................................................UAAUACUGUCAGGUAAAa........................... len:18 al:2
.........................................................UAAgACUGUCAGGUAAAGAUGUCC..................... len:24 al:1
.........................................................UAAUAuUGUCAGGUAAAGAUGUC...................... len:23 al:6
.........................................................UAAUACUGUuAGGUAAAGAUGUC...................... len:23 al:11
.........................................................UAAUACUGUCAGGUAAAGAcG........................ len:21 al:4
.........................................................UAAUACUGUCAGGUAAAGAUGUa...................... len:23 al:370
.........................................................UAAUACUGUCAGGUAAAGcUGUC...................... len:23 al:4
.........................................................UAAUACUGUCAGGgAAAG........................... len:18 al:1
.........................................................UAAUACUGUCAGGUAcAGAUGUCC..................... len:24 al:1
.........................................................UAgUACUGUCAGGUAAAGAUGU....................... len:22 al:30
.........................................................UAAUACUGUCAGGUAAuGAU......................... len:20 al:2
.........................................................UAAUACUGUCAGGUAAAGgUGU....................... len:22 al:46
.........................................................UAAUACUGUCgGGUAAAGAUGUC...................... len:23 al:64
.........................................................UAAUACUGUCAGGUAAAGAUGgC...................... len:23 al:31
.........................................................UAAUACUGUCcGGUAAAGAUGU....................... len:22 al:5
.........................................................UAAUACUaUCAGGUAAAGAUGU....................... len:22 al:3
.........................................................UAAUACUGUCAGGUAAAGAUG........................ len:21 al:877
.........................................................UAAUACUGUCAGaUAAAGAUGUC...................... len:23 al:5
.........................................................UAAUACaGUCAGGUAAAGAUGU....................... len:22 al:9
.........................................................UAAcACUGUCAGGUAAAGAUG........................ len:21 al:2
.........................................................UAAUACUGUCAGGUAAAGAUGUgC..................... len:24 al:1
.........................................................UAAUACUGUCAGGUAAAGAa......................... len:20 al:2
.........................................................UAAUACUGUCAGGUAAAGAUGUCg..................... len:24 al:186
.........................................................UAAUACgGUCAGGUAAAGAUGUC...................... len:23 al:3
.........................................................UAAUACUGUCAGGUAAAGAUGUCC..................... len:24 al:527
..........................................................AAUACUGUCAGGUAAAGAUGUC...................... len:22 al:38
..........................................................AAUACUGUCAGGUAAAGAUGUCa..................... len:23 al:3
..........................................................uAUACUGUCAGGUAAAGAUGU....................... len:21 al:2
..........................................................AAUACUGUCAGGUAAAGAUGUCC..................... len:23 al:5
..........................................................AAUACUGUCAGGUAAAGAgGUC...................... len:22 al:1
..........................................................AAUACUGUCAGGUAAAGAUGU....................... len:21 al:9
..........................................................AAUACUGUCAGGUAAAGAUGUCg..................... len:23 al:3
..........................................................AAUACUGUCAGGUAAAGAUGUu...................... len:22 al:3
..........................................................AAUgCUGUCAGGUAAAGAUGUC...................... len:22 al:5
..........................................................uAUACUGUCAGGUAAAGAUGUC...................... len:22 al:5
..........................................................AAUACUGUCAGGUAAAGAUGUuC..................... len:23 al:1
..........................................................AAUACUGUCAGGUAAAGAUGUCu..................... len:23 al:57
..........................................................AAUACUGUCAGGUAAgGAUGUC...................... len:22 al:1
...........................................................AUACUGUCAGGUAAAGAUGUCa..................... len:22 al:1
...........................................................AUACUGUCAGGUAAAGAUGUu...................... len:21 al:1
...........................................................AUACUGUCAGGUAAAGAUGU....................... len:20 al:1
...........................................................AUACUGUCAGGUAAAGAUG........................ len:19 al:2
...........................................................AUACUGUCAGGUAAAGAUGc....................... len:20 al:1
...........................................................AUACUGUCAGGUAAAGAUGUC...................... len:21 al:1
............................................................UACUGUCAGGUAAAGAUGUC...................... len:20 al:1
............................................................UACUGUCAGGUAAAGAUGUCu..................... len:21 al:4
............................................................UACUGUCAGGUAAAGAUG........................ len:18 al:1
............................................................UACUGUCAGGUAAAGAUGU....................... len:19 al:2
.............................................................ACUGUCAGGUAAAGAUGUCu..................... len:20 al:2
..............................................................CUGUCAGGUAAAGAUGUC...................... len:18 al:1
...............................................................UGUCAGGUAAAGAUGUCu..................... len:18 al:1
................................................................................CGCAGAUCUCGACCACUU.... len:18 al:1
................................................................................CGCAGAUCUCGACCACUUCGA. len:21 al:8
................................................................................CGCAGAUCUCGACCACUUCGAA len:22 al:2