Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026865271.1:194028-194125 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_29018.ps.pdf
Locus Name: Cluster_29018
UGGAGAUAGUGUGUCCUUGACCUUGUUCAGCUGGGUUGCGAUGUAAUAGAAAUCAUCACAACCUGCUUGAAUGAGGACAAGUGCAUUCUGUAGCAACA
..(..((((.((((.((((.(((((((((((.((((((.((((..........)))).)))))))).))))))))).)))).)))).))))..).... (-38.70)
....................CCUUGUUCAGCUGGGUUGCGAUc....................................................... len:23 al:1
....................CCUUGUUCAGCUGGGUUGCGAcG....................................................... len:23 al:1
....................CCUUGUUCAGCUGGGUUGCGAU........................................................ len:22 al:12
....................CCUUGUUCAGCUGGGUUGCGAUu....................................................... len:23 al:10
....................CCUUGUUCAGCUGGGUcGCGAUG....................................................... len:23 al:1
....................CCUUGUUCAGCUGGGUUGCGAUG....................................................... len:23 al:146
....................CCUUGUUCAGCUGGGUUGCaAUG....................................................... len:23 al:1
....................CCUUGUUCAGCUGGGUUGCGAUa....................................................... len:23 al:14
....................CCUUGcUCAGCUGGGUUGCGAUG....................................................... len:23 al:2
....................CCUUGUUCAGCcGGGUUGCGAUG....................................................... len:23 al:1
....................CCUUGUUCAGCUGaGUUGCGAUG....................................................... len:23 al:1
....................CCUUGUUCAGCUGGGUUGCGAa........................................................ len:22 al:1
....................CCUUGUUCAGCUGGGUUGCGAgG....................................................... len:23 al:1
....................CCUUGUUCAGCUGGGUUGCGAc........................................................ len:22 al:2
....................CCUUGUUCAGCUGGGUUGCGA......................................................... len:21 al:1
.....................CUUGUUCAGCUGGGUUGCGAUG....................................................... len:22 al:5
.....................................................CAUCACAACCUGCUUGAAUGAGGAC.................... len:25 al:1
......................................................cUCACAACCUGCUUGAAUGAGGAC.................... len:24 al:1
......................................................AUCACAACCUGCUUGAAUGAGGACu................... len:25 al:1
.......................................................UCACAACCUGCUUGAAUGAa....................... len:20 al:4
.......................................................UCACAACCUGCUUGAAgGAGGAC.................... len:23 al:2
.......................................................UCACAACCUGCUUGcAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAaGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGAAUGAGG...................... len:21 al:305
.......................................................UuACAACCUGCUUGAAUGAGGACA................... len:24 al:4
.......................................................UCACAACCUGCUUGAgUGA........................ len:19 al:1
.......................................................aCACAACCUGCUUGAAUGAGGA..................... len:22 al:8
.......................................................UCACcACCUGCUUGAAUGAGGACA................... len:24 al:3
.......................................................UCACAACCUGCUUGAAUGu........................ len:19 al:1
.......................................................UCACAACCUGaUUGAAUGAGGAC.................... len:23 al:2
.......................................................UCAuAACCUGCUUGAAUGAGGA..................... len:22 al:2
.......................................................UCACAACCUGCUaGAAUGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGAAUGAGa...................... len:21 al:73
.......................................................cCACAACCUGCUUGAAUGAGGA..................... len:22 al:14
.......................................................UCACAACCUGCUUGAAUGAGGu..................... len:22 al:42
.......................................................UCcCAACCUGCUUGAAUGAGGACA................... len:24 al:2
.......................................................UCACgACCUGCUUGAAUGAGGA..................... len:22 al:8
.......................................................UCACAACCUGCUUGAAUGgGGACA................... len:24 al:17
.......................................................aCACAACCUGCUUGAAUGAGGACA................... len:24 al:4
.......................................................UCACAACCUGCUUGAAUGuGGA..................... len:22 al:1
.......................................................UCgCAACCUGCUUGAAUGAGGACA................... len:24 al:11
.......................................................UCACAACCcGCUUGAAUGAGGAC.................... len:23 al:88
.......................................................UCgCAACCUGCUUGAAUGAGGAC.................... len:23 al:144
.......................................................UCuCAACCUGCUUGAAUGAGGAC.................... len:23 al:21
.......................................................UCACAACCUGCUUGAAUGAGGACuA.................. len:25 al:1
.......................................................UCACAACCUGCUUGAAUGAu....................... len:20 al:1
.......................................................UCACAACCUGCUUGAAUGAGGACu................... len:24 al:16850
.......................................................UCACAACCUGCUUGAcUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAgUGAGGACA................... len:24 al:4
.......................................................UCACAACCUGCcUGAAUGAGGA..................... len:22 al:12
.......................................................UCACAACCUGCUUGAAUGcGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUGAGGgCA................... len:24 al:10
.......................................................UCACAAaCUGCUUGAAUGAGGAC.................... len:23 al:5
.......................................................UCACAACCUGCUUGAAUGAGGc..................... len:22 al:8
.......................................................UCACAACuUGCUUGAAUGAGGAC.................... len:23 al:27
.......................................................UCACAACCUGCUUGAAcGAGGACA................... len:24 al:3
.......................................................UCACAACCUGCUUGAAUGAuGAC.................... len:23 al:6
.......................................................UCACAACCUGCUUGAAUc......................... len:18 al:1
.......................................................UCACAACCUGCUUGAAUGAGGAaA................... len:24 al:7
.......................................................UCACAACCUGCUUGAAUGAaGAC.................... len:23 al:13
.......................................................UCACAACCUGuUUGAAUGAGGAC.................... len:23 al:44
.......................................................UCACAACCUGCUUuAAUGAGGAC.................... len:23 al:2
.......................................................UCACAACCUGCUUGAAUGAGaA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAcUGAGGAC.................... len:23 al:10
.......................................................UCACuACCUGCUUGAAUGAGGA..................... len:22 al:3
.......................................................UCACAACCUGCUUGAAUaAGGAC.................... len:23 al:22
.......................................................UCACAACCUGCUUGAAUGAaGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGgAUGAGGAC.................... len:23 al:119
.......................................................UCuCAACCUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUGAGGACAc.................. len:25 al:2
.......................................................UCACAACuUGCUUGAAUGAGGACA................... len:24 al:4
.......................................................UCACAACCUGCUUGAAUGAGGg..................... len:22 al:42
.......................................................UCACAACCUGCUUGAuUGAGGAC.................... len:23 al:2
.......................................................UCACgACCUGCUUGAAUG......................... len:18 al:2
.......................................................UCACcACCUGCUUGAAUGAGGAC.................... len:23 al:14
.......................................................UCACAAaCUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUu......................... len:18 al:3
.......................................................UCgCAACCUGCUUGAAUGAGG...................... len:21 al:1
.......................................................UuACAACCUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUaCUUGAAUG......................... len:18 al:1
.......................................................UCACAACaUGCUUGAAUGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUaAAUGA........................ len:19 al:1
.......................................................UCACAACCUGCUUGcAUGAGGAC.................... len:23 al:7
.......................................................UCACAACCUGCUUGAAcGAGGA..................... len:22 al:7
.......................................................UCACAACCUGCUUGAAUGAGGACgA.................. len:25 al:2
.......................................................UCACAgCCUGCUUGAAUGAGG...................... len:21 al:3
.......................................................UCAgAACCUGCUUGAAUGAGGAC.................... len:23 al:5
.......................................................UCACAACCUGCUUGuAUGAGGAC.................... len:23 al:5
.......................................................UCACcACCUGCUUGAAUGAGGA..................... len:22 al:2
.......................................................UCACAACCUaCUUGAAUGAGGA..................... len:22 al:4
.......................................................UCACAACCUGCUUGAAUGAGGcC.................... len:23 al:10
.......................................................UCACAACCUGCUUGAAUGAGGACg................... len:24 al:287
.......................................................UCuCAACCUGCUUGAAUGAGGACA................... len:24 al:2
.......................................................UCACAACCUGCUUGAAUGAGGACAAu................. len:26 al:3
.......................................................UCACAACCUGCUcGAAUGAGGACA................... len:24 al:3
.......................................................UCACAACuUGCUUGAAUGAGGA..................... len:22 al:7
.......................................................UCACAACCaGCUUGAAUGAGGACA................... len:24 al:2
.......................................................UCACAACCUGCUUGgAUGAGGA..................... len:22 al:13
.......................................................UCAuAACCUGCUUGAAUGAGG...................... len:21 al:1
.......................................................UCACuACCUGCUUGAAUGAGGAC.................... len:23 al:18
.......................................................UCACAACCUGCUUGAAUGAGGAC.................... len:23 al:31912
.......................................................UCcCAACCUGCUUGAAUGAGGAC.................... len:23 al:8
.......................................................UCACAACCUGCUUGAAUGgGGAC.................... len:23 al:168
.......................................................UCACAACCUGCUUGAAUuAGGAC.................... len:23 al:5
.......................................................UuACAACCUGCUUGAAUGAGGAC.................... len:23 al:21
.......................................................UCACAACCUGCUUGAAUuAGGACA................... len:24 al:2
.......................................................UCACAACCUGCUUGAAUGAuGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUGAGGACAAa................. len:26 al:1
.......................................................UCACAACCUGCUUGAAUGAGGACAA.................. len:25 al:12
.......................................................UCACAACCUGCcUGAAUGAGGAC.................... len:23 al:80
.......................................................UCAuAACCUGCUUGAAUGAGGAC.................... len:23 al:31
.......................................................UCACAACCUGCUUGAAUGAGGA..................... len:22 al:4129
.......................................................UCAgAACCUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUGAGGAu.................... len:23 al:3494
.......................................................UCACAAuCUGCUUGAAUGAGGACA................... len:24 al:1
.......................................................UCACAuCCUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGgAUG......................... len:18 al:2
.......................................................UCACAACCUGCgUGAAUGAGGAC.................... len:23 al:15
.......................................................UCACAACCcGCUUGAAUGAGGA..................... len:22 al:12
.......................................................UCACAACCUGCUUGAAUGAGu...................... len:21 al:2
.......................................................UCACAACCUGaUUGAAUGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGAgUG......................... len:18 al:1
.......................................................UCACAACCUGCUcGAAUGAGG...................... len:21 al:2
.......................................................UCACAACCUGCUUGAAUGAGGAa.................... len:23 al:412
.......................................................UCACAACCUGCUcGAAUGAGGA..................... len:22 al:11
.......................................................UCACAACCUGCUUGAAUGAGaAC.................... len:23 al:19
.......................................................UCACAACCgGCUUGAAUGAGGAC.................... len:23 al:2
.......................................................UCACAACCUGCUUaAAUGAGGAC.................... len:23 al:9
.......................................................UCcCAACCUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAgCCUGCUUGAAUGAGGA..................... len:22 al:13
.......................................................UCACAACCUuCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUaCUUGAAUGAGGAC.................... len:23 al:27
.......................................................UCACAACCUGCUUuAAUGAGGACA................... len:24 al:1
.......................................................gCACAACCUGCUUGAAUGAGGAC.................... len:23 al:8
.......................................................cCACAACCUGCUUGAAUGAGGACA................... len:24 al:10
.......................................................UCACAACCUGCUUGAAUa......................... len:18 al:17
.......................................................UCACAACCUGCUUGAAUGAGGuC.................... len:23 al:19
.......................................................UCACAACCUGCUUGAAUGcGGAC.................... len:23 al:7
.......................................................UCACAgCCUGCUUGAAUGAGGACA................... len:24 al:9
.......................................................UCgCAACCUGCUUGAAUGAGGA..................... len:22 al:13
.......................................................UCACAACCUGCaUGAAUGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGAAUGAGGACA................... len:24 al:2788
.......................................................UCACAACCUGCUUGAAcGAGGAC.................... len:23 al:53
.......................................................UCACAACCUGCUgGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUaGAAUGAGGAC.................... len:23 al:8
.......................................................UCACAACCUGCUUGAAUGAGuAC.................... len:23 al:3
.......................................................cCACAACCUGCUUGAAUGAGGAC.................... len:23 al:163
.......................................................UCACAACCUGCUUGAAUGAGGAg.................... len:23 al:13
.......................................................UCACAACCUGCUUGAgUGAGGA..................... len:22 al:11
.......................................................UCACAACCUGCUUGAAUGuGGAC.................... len:23 al:20
.......................................................UCACAACCUGuUUGAAUGAGGA..................... len:22 al:2
.......................................................UuACAACCUGCUUGAAUG......................... len:18 al:1
.......................................................UCACAACCUGCUUGAAUGAGuA..................... len:22 al:1
.......................................................UCACAACCaGCUUGAAUGAGGAC.................... len:23 al:7
.......................................................UCACAACCUGCUUGAAUGAGGACcA.................. len:25 al:8
.......................................................UCAgAACCUGCUUGAAUGAGG...................... len:21 al:1
.......................................................gCACAACCUGCUUGAAUGAGGA..................... len:22 al:2
.......................................................UCACAACCUGCaUGAAUGAGGAC.................... len:23 al:7
.......................................................UCACAcCCUGCUUGAAUGAGGAC.................... len:23 al:14
.......................................................UCACAACCUGuUUGAAUGAGG...................... len:21 al:1
.......................................................UCACAACCUGCUgGAAUGAGGAC.................... len:23 al:3
.......................................................UCACAACCUGCUUGAAUcAGGACA................... len:24 al:1
.......................................................UCACAACCcGCUUGAAUGAGGACA................... len:24 al:7
.......................................................UCACAACCUGCUUGAAUGgGG...................... len:21 al:1
.......................................................UCACAACCUGCUUGAAUGAGGAuA................... len:24 al:13
.......................................................UCACgACCUGCUUGAAUGAGGAC.................... len:23 al:129
.......................................................UCACAACCUGCUcGAAUGAGGAC.................... len:23 al:90
.......................................................UCACAACCUGCUUGAAUGAGGACc................... len:24 al:2602
.......................................................UCACAACCUGCUUGAAaGAGGAC.................... len:23 al:7
.......................................................UCACAACCUGCUUGAAUGAcGAC.................... len:23 al:2
.......................................................UCACAAuCUGCUUGAAUGAGGAC.................... len:23 al:10
.......................................................aCACAACCUGCUUGAAUGAGGAC.................... len:23 al:24
.......................................................UCAuAACCUGCUUGAAUGAGGACA................... len:24 al:3
.......................................................UCACAACCUGCUUGAAUGAGGACAAG................. len:26 al:1
.......................................................UCACAACCUuCUUGAAUGAGGAC.................... len:23 al:1
.......................................................UCACAACCUaCUUGAAUGAGGACA................... len:24 al:4
.......................................................UCACAACCUGCUUGAAUGAGGACAu.................. len:25 al:7
.......................................................UCACAACCUGCUUGgAUGA........................ len:19 al:1
.......................................................UCACAACCaGCUUGAAUGAGGA..................... len:22 al:2
.......................................................UCACAACCUGuUUGAAUGAGGACA................... len:24 al:4
.......................................................UCACAACCUGCUUGAAUGAGGACAAuU................ len:27 al:1
.......................................................UgACAACCUGCUUGAAUGAGGAC.................... len:23 al:3
.......................................................UCACAgCCUGCUUGAAUGAGGAC.................... len:23 al:88
.......................................................UCACAACaUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAgUGAGGAC.................... len:23 al:86
.......................................................UCACAACCUGCcUGAAUGAGGACA................... len:24 al:8
.......................................................UCACAcCCUGCUUGAAUGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGAAUGAGGgC.................... len:23 al:162
.......................................................UCACAACaUGCUUGAAUGAGGAC.................... len:23 al:10
.......................................................UCACAACCUGCUUGAAUGgGGA..................... len:22 al:27
.......................................................UCACAACCUGCUUGAAUGAGGACAg.................. len:25 al:3
.......................................................UCACAACCUGCaUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUaAGGACA................... len:24 al:4
.......................................................UCACAcCCUGCUUGAAUGAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUaAGGA..................... len:22 al:1
.......................................................UCACAACCUGCUUGAAUGuGGACA................... len:24 al:2
.......................................................UCACAACCUGCgUGAAUGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGAAUGAG....................... len:20 al:74
.......................................................UCACAuCCUGCUUGAAUGAGGACA................... len:24 al:1
.......................................................UCACAACCUGCUUGAAUGA........................ len:19 al:56
.......................................................UCACAuCCUGCUUGAAUGAGGAC.................... len:23 al:7
.......................................................UCACgACCUGCUUGAAUGAGGACA................... len:24 al:16
.......................................................UCACAACCUGCUUGgAUGAGGACA................... len:24 al:11
.......................................................UCACAACCUGCUUGAAUG......................... len:18 al:139
.......................................................UaACAACCUGCUUGAAUGAGGAC.................... len:23 al:2
.......................................................UCACAACCcGCUUGAAUGAGG...................... len:21 al:1
.......................................................UCACAACCUGCUUGAAcGAGG...................... len:21 al:1
........................................................CACAACCUGCUUGAAUGAGGACu................... len:23 al:234
........................................................CACAACCUGCUUGAgUGAGGAC.................... len:22 al:3
........................................................CACAACCUGCUUGAAUGAGGAC.................... len:22 al:455
........................................................CACAACCUGCUUGAAUGAGGAa.................... len:22 al:7
........................................................CACAACCUGCUUGAAUGAGG...................... len:20 al:1
........................................................CACAACCUGCUUGAAUGAGGAu.................... len:22 al:80
........................................................CACAACCUGCUUGAAUGA........................ len:18 al:2
........................................................CACAACCUGCUUGAAUGcGGAC.................... len:22 al:1
........................................................CACAACCcGCUUGAAUGAGGAC.................... len:22 al:1
........................................................CACAACuUGCUUGAAUGAGGAC.................... len:22 al:2
........................................................CACAACCUGCUUGAAUGAGGACAA.................. len:24 al:1
........................................................CACAACCUGCUUGAAcGAGGAC.................... len:22 al:1
........................................................CACAAuCUGCUUGAAUGAGGAC.................... len:22 al:1
........................................................CACAACCUGCUUGAAUGAGGgC.................... len:22 al:3
........................................................CACAACCUGCUUGAAUGgGGAC.................... len:22 al:1
........................................................CACAACCUGCUUGAAUGAGGcC.................... len:22 al:1
........................................................CACAACCUGCUUGAAUGAGGACcA.................. len:24 al:2
........................................................CACgACCUGCUUGAAUGAGGAC.................... len:22 al:1
........................................................CACAACCUGCUUGAAUGAGGACA................... len:23 al:21
........................................................CACAACCUGCUUGgAUGAGGA..................... len:21 al:2
........................................................CACAACCUGCUUGAAUGAGGACc................... len:23 al:44
........................................................CACAACCUGCcUGAAUGAGGAC.................... len:22 al:2
........................................................CACAACCUGCUUGAAUGAGGACg................... len:23 al:4
........................................................CACAACCUGCUUGgAUGAGGAC.................... len:22 al:2
........................................................CACAACCUGCUUGAAUGAG....................... len:19 al:1
........................................................CuCAACCUGCUUGAAUGAGGAC.................... len:22 al:1
........................................................gACAACCUGCUUGAAUGAGGAC.................... len:22 al:1
........................................................CACAACCUGCUUGAAUGAGGA..................... len:21 al:20
........................................................CACAgCCUGCUUGAAUGAGGAC.................... len:22 al:1
........................................................CACAACCUGCUUGAAaGAGGAC.................... len:22 al:2
........................................................CgCAACCUGCUUGAAUGAGGAC.................... len:22 al:2
.........................................................ACAACCUGCUcGAAUGAGGAC.................... len:21 al:1
.........................................................ACAACCUGCUUGAAUGAGGACc................... len:22 al:3
.........................................................ACAACCUGCUUGAAUGAGGACu................... len:22 al:28
.........................................................ACgACCUGCUUGAAUGAGGACA................... len:22 al:1
.........................................................ACAACCUGCUUGAAUGAGGACA................... len:22 al:5
.........................................................ACAACCUGCUcGAAUGAGGA..................... len:20 al:1
.........................................................ACAACCUGCUUGAAUGAGGAa.................... len:21 al:1
.........................................................ACAACCUGCUUGAAcGAGGAC.................... len:21 al:1
.........................................................ACAACCUGCUUGAAUGAGGA..................... len:20 al:5
.........................................................ACAACCUGCUUGAAUGAGGAu.................... len:21 al:4
.........................................................ACAACCUGCUUGAAUGAGGAC.................... len:21 al:38
.........................................................gCAACCUGCUUGAAUGAGGACA................... len:22 al:1
..........................................................CAACCUGCUUGAAUGAGGACu................... len:21 al:1
..........................................................CAACCUGCUUGgAUGAGGAC.................... len:20 al:1
..........................................................CAACCUGCUUGAAUGAGGAC.................... len:20 al:1
...........................................................AACCUGCUUGAAUGAGGACcA.................. len:21 al:1
...........................................................AACCUGCUUGAAUGAGGAC.................... len:19 al:1
............................................................ACCUGCUUGAAUGAGGAC.................... len:18 al:2
............................................................ACCUGCUUGAAUGAGGAu.................... len:18 al:1
..............................................................................AAGUGCAUUCUGUAaCAAC. len:19 al:1