Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026852815.1:56435-56532 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_2646.ps.pdf
Locus Name: Cluster_2646
AGGAAGGGGGGCUUGUAUAAGGGCUGGUGUUGGUGAAAUGCAUUGUGAUGUUGUUGUAUUGCACUUGCCCCGGCCUUUAUACUUGUUUCCACCAAUAC
.((...((((((..(((((((((((((.((.((((.((((((............)))))).)))).)).)))))))))))))..)))))).))..... (-41.50)
....................GGGCUGGUGUUGGUGAAAUGCA........................................................ len:22 al:2
......................................................UcUAUUGCACUUGCCCCGGCCUUU.................... len:24 al:1
.......................................................cUAUUGCACUUGCCCCGGCCUU..................... len:22 al:1
.......................................................cUAUUGCACUUGCCCCGGCCUUU.................... len:23 al:6
.......................................................aUAUUGCACUUGCCCCGGCCUUU.................... len:23 al:3
.......................................................aUAUUGCACUUGCCCCGGCCUUUA................... len:24 al:1
........................................................UAUUGCACUUGCCCCGGCCaUUA................... len:23 al:3
........................................................cAUUGCACUUGCCCCGGCCUUU.................... len:22 al:112
........................................................UAUUGCACUUGCCCCGGCCUUUgU.................. len:24 al:1
........................................................UAUUGCcCUUGCCCCGGCCUUU.................... len:22 al:18
........................................................UAUUGCACUUGCCCuGGCCUUUA................... len:23 al:2
........................................................UAUUGCACUUGCCCCGGCCc...................... len:20 al:35
........................................................UAUUGaACUUGCCCCGGCCUUU.................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCCg...................... len:20 al:5
........................................................UAUUGCAaUUGCCCCGGCCUUU.................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCgUUU.................... len:22 al:15
........................................................UAUUGCACUUGCCCCGaCCUUUA................... len:23 al:1
........................................................UAUUGCACUUGuCCCGGCCUUUA................... len:23 al:2
........................................................UAUUGCACUUGCCCCGGCCU...................... len:20 al:242
........................................................UAUUGCuCUUGCCCCGGCCUUU.................... len:22 al:12
........................................................UAUUaCACUUGCCCCGGCCUUUA................... len:23 al:2
........................................................UAUUGCACUUGCCCCGGCCUUU.................... len:22 al:32565
........................................................UAUUGCACUUGCCCCGGCCUUUA................... len:23 al:965
........................................................UAUUGCACUUGCCCCGGCCgUUA................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUu................... len:23 al:703
........................................................UAUUGCACUUGCCCCGGgCUUU.................... len:22 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUAUc................. len:25 al:1
........................................................cAUUGCACUUGCCCCGGCCUUUA................... len:23 al:4
........................................................UAUUGCACUaGCCCCGGCCUUU.................... len:22 al:9
........................................................UAUUGCACUcGCCCCGGCCUUU.................... len:22 al:111
........................................................UAUUGCACUUGCCCaGGCCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGuCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCgGGCCUUUA................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUuUAC................ len:26 al:1
........................................................UAUUGuACUUGCCCCGGCCUUUAU.................. len:24 al:1
........................................................UAUUGCACUUGCCCCuGCCUUU.................... len:22 al:6
........................................................UAUUGCACUUuCCCCGGCCUUU.................... len:22 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUcU.................. len:24 al:2
........................................................UAUUGuACUUGCCCCGGCC....................... len:19 al:1
........................................................UAUUGCACUUGCCCCGGuCUUU.................... len:22 al:35
........................................................UAUUGCACUUGCCCCGGCaUUU.................... len:22 al:7
........................................................UAUUGCACUUGaCCCGGCCUUU.................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCCUUaA................... len:23 al:19
........................................................UAUUGCACUUGCCCCGGCCUcUA................... len:23 al:2
........................................................UAUUGCACUUGCCCCGGCCUUc.................... len:22 al:3282
........................................................UAUUGCACUUGCCCCGGCuUUUA................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCUUgA................... len:23 al:1
........................................................UAUUGgACUUGCCCCGGCCUUU.................... len:22 al:1
........................................................UAcUGCACUUGCCCCGGCCU...................... len:20 al:1
........................................................UAUUGCACcUGCCCCGGCCU...................... len:20 al:1
........................................................UgUUGCACUUGCCCCGGCCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGuCU...................... len:20 al:1
........................................................UAUUGCACUUGCCCCGGCCUa..................... len:21 al:60
........................................................UAUUGCACUUGCCCCGGCC....................... len:19 al:22
........................................................UAUUGCACUUGCCCCGGCu....................... len:19 al:12
........................................................UAUcGCACUUGCCCCGGCCU...................... len:20 al:1
........................................................UAUUGCACUUGCCgCGGCCUU..................... len:21 al:3
........................................................UAUUGCACUUGCCCCGGCCcUUA................... len:23 al:1
........................................................UAcUGCACUUGCCCCGGCCUUU.................... len:22 al:103
........................................................UAUUGCACUcGCCCCGGCCUU..................... len:21 al:3
........................................................UuUUGCACUUGCCCCGGCCUUU.................... len:22 al:5
........................................................UAUUGCgCUUGCCCCGGCCUUUA................... len:23 al:5
........................................................UAUUGCACUUGCCCCGuCCUUU.................... len:22 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUAc.................. len:24 al:3
........................................................UAUUGCACUUGCCCCGGCCUUUAUAa................ len:26 al:4
........................................................UAaUGCACUUGCCCCGGCCUUU.................... len:22 al:12
........................................................UAUUGuACUUGCCCCGGCCUUUA................... len:23 al:1
........................................................UAUUGCACUUGgCCCGGCCUUU.................... len:22 al:12
........................................................UAUUGCACUUGCCCCGGCCUc..................... len:21 al:158
........................................................UAUaGCACUUGCCCCGGCCUUU.................... len:22 al:10
........................................................UcUUGCACUUGCCCCGGCCUUU.................... len:22 al:13
........................................................UAUUGCACUUGCCCCGGCCUUUAgA................. len:25 al:71
........................................................UAUUGCACUUGCCCCGGu........................ len:18 al:2
........................................................UAUUGCACUUGCCCCGcCCUUU.................... len:22 al:3
........................................................UAUUcCACUUGCCCCGGCCUUU.................... len:22 al:2
........................................................UAUUGCAuUUGCCCCGGCCU...................... len:20 al:1
........................................................UAUUGCACUUcCCCCGGCCUUU.................... len:22 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUAaA................. len:25 al:410
........................................................UAUUGCACUUGCCCCGGCgUU..................... len:21 al:2
........................................................UAUUGCACUUGCCuCGGCCUUU.................... len:22 al:42
........................................................aAUUGCACUUGCCCCGGCCUUU.................... len:22 al:20
........................................................UAUUGCACUcGCCCCGGCCUUUA................... len:23 al:3
........................................................UAUUGCACUUGCCCCGGCCUUa.................... len:22 al:525
........................................................UAUUGCACaUGCCCCGGCCUUU.................... len:22 al:8
........................................................UAUUGuACUUGCCCCGGCCUU..................... len:21 al:2
........................................................UAUUGCACUUGCCCCGGCa....................... len:19 al:5
........................................................UAcUGCACUUGCCCCGGCCUUUA................... len:23 al:3
........................................................UAaUGCACUUGCCCCGGCCUU..................... len:21 al:2
........................................................UAUUGCACUUGCCCCaGCCUUU.................... len:22 al:33
........................................................UAUUGCcCUUGCCCCGGCCU...................... len:20 al:1
........................................................UAUUGCACUUGCCCCGGCuUU..................... len:21 al:2
........................................................UAUUGCACUUGCCCCGGCCUUUAgAC................ len:26 al:1
........................................................UAUUGCgCUUGCCCCGGCCUUU.................... len:22 al:123
........................................................UAUUuCACUUGCCCCGGCCUUU.................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCCcU..................... len:21 al:5
........................................................cAUUGCACUUGCCCCGGCCUUUAU.................. len:24 al:1
........................................................UAUUGCcCUUGCCCCGGCCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCgGGCCUUU.................... len:22 al:30
........................................................UAUUGCACUUGCCCCGGCCUU..................... len:21 al:1562
........................................................UAUUGCACUUGCCCCGGCCgUU.................... len:22 al:12
........................................................UAUUGCACUUGCCgCGGCCUUU.................... len:22 al:24
........................................................UAUUGCACUUaCCCCGGCCUU..................... len:21 al:3
........................................................UAUUGCACUUGCCaCGGCCUUU.................... len:22 al:5
........................................................UAUUGCACUUGCCCCGGCCUUg.................... len:22 al:97
........................................................UAUUGCACUUGCCCuGGCCUUU.................... len:22 al:44
........................................................UAUUGCACUUGCuCCGGCCUU..................... len:21 al:2
........................................................UAUUGCACUUGCCCCGGCCaUU.................... len:22 al:133
........................................................UgUUGCACUUGCCCCGGCCUUU.................... len:22 al:97
........................................................UAUUGCACUUGCCCCGGCCcUU.................... len:22 al:84
........................................................UgUUGCACUUGCCCCGGCCU...................... len:20 al:1
........................................................UAUUaCACUUGCCCCGGCCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCuU...................... len:20 al:1
........................................................cAUUGCACUUGCCCCGGCCUU..................... len:21 al:8
........................................................UAUUGCACUUGCCuCGGCCUUUA................... len:23 al:1
........................................................UAUUGCACUUGCCuCGGCCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCCUg..................... len:21 al:16
........................................................UAUgGCACUUGCCCCGGCCUUU.................... len:22 al:3
........................................................UAUUGCACUUGCCCCGGCuUUU.................... len:22 al:29
........................................................UAUUGCACUUGCCCCGGCCUUUAU.................. len:24 al:14
........................................................UAUUGCACUUGCCCCGGCCUUUc................... len:23 al:57
........................................................UAUgGCACUUGCCCCGGCCUUUA................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCUgU.................... len:22 al:209
........................................................UAUUGCACUUGuCCCGGCCUUU.................... len:22 al:44
........................................................UAUUGCACUUGCCCCGGCCUUUAaAC................ len:26 al:2
........................................................UAUUGCACUUGCCCCGGCCUUUAUAu................ len:26 al:1
........................................................UAUUGCACUUGCaCCGGCCU...................... len:20 al:1
........................................................UAUUGCACUUGCaCCGGCCUUU.................... len:22 al:5
........................................................UAUUGCACUUGCaCCGGCCUU..................... len:21 al:1
........................................................UAUUaCACUUGCCCCGGCCUUU.................... len:22 al:45
........................................................UAUcGCACUUGCCCCGGCCUU..................... len:21 al:9
........................................................UAgUGCACUUGCCCCGGCCUUU.................... len:22 al:9
........................................................UAUUGCACUUGCCCCGGCCUUcA................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGC........................ len:18 al:17
........................................................UAUUGCuCUUGCCCCGGCCUUUA................... len:23 al:1
........................................................UAUUGCACUUGCCCCGaCCU...................... len:20 al:2
........................................................UAUUGCACUUGCCCCGGCCa...................... len:20 al:27
........................................................UAUUGCACUUGCCCCGGCCUUUAg.................. len:24 al:79
........................................................UAUUGuACUUGCCCCGGCCUUU.................... len:22 al:31
........................................................UAUUGCACgUGCCCCGGCCUUU.................... len:22 al:1
........................................................UAUUGCACUgGCCCCGGCCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCCcGCCUUU.................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCCUUUAa.................. len:24 al:518
........................................................gAUUGCACUUGCCCCGGCCUUU.................... len:22 al:2
........................................................UAcUGCACUUGCCCCGGCCUU..................... len:21 al:5
........................................................UAUUGCACUUGCCCCGGCCUcU.................... len:22 al:71
........................................................UAUUGCACcUGCCCCGGCCUUU.................... len:22 al:91
........................................................UAUUGCACUaGCCCCGGCCUU..................... len:21 al:1
........................................................UAUcGCACUUGCCCCGGCCUUU.................... len:22 al:120
........................................................UAUUGCACUUGCCCCGGCCUUUuU.................. len:24 al:81
........................................................UAUUGCACUUGCCCCGGCCUUUg................... len:23 al:19
........................................................UAUUGCACUUGCCCCGGCCUaU.................... len:22 al:11
........................................................UAUUGCACUUGCuCCGGCCUUUA................... len:23 al:1
........................................................UAUUGCACUUGCuCCGGCCUUU.................... len:22 al:45
........................................................UAUUGCACUUGCCCCGGCCaU..................... len:21 al:1
........................................................UAUUGCACcUGCCCCGGCCUU..................... len:21 al:3
........................................................UAUUGCACUUaCCCCGGCCUUU.................... len:22 al:28
........................................................UAUcGCACUUGCCCCGGCCUUUA................... len:23 al:3
........................................................UAUUGCACUUGCCCCGaCCUUU.................... len:22 al:24
........................................................UAUUGCAuUUGCCCCGGCCUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCCUaUA................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCaUU..................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCCgU..................... len:21 al:11
........................................................UAUUGCACUUGCCCCGGCCUUUAUA................. len:25 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUAUu................. len:25 al:14
........................................................UAUUGCACUUGCCCaGGCCUUU.................... len:22 al:14
........................................................UAUUGCACUUGCCCCGGa........................ len:18 al:1
........................................................UAUUGCACUUGCCCgGGCCUU..................... len:21 al:5
........................................................UAUUGCAgUUGCCCCGGCCUUU.................... len:22 al:1
........................................................UAUUGCACUgGCCCCGGCCUUU.................... len:22 al:10
........................................................UAUUGCACcUGCCCCGGCCUUUA................... len:23 al:3
........................................................UAUUGCACUUGCCCuGGCCUU..................... len:21 al:2
........................................................UAUUGCAuUUGCCCCGGCCUUU.................... len:22 al:23
........................................................UAUUGCgCUUGCCCCGGCCUU..................... len:21 al:3
........................................................cAUUGCACUUGCCCCGGCCU...................... len:20 al:1
.........................................................AUUGCACUUGCCCCGGCCa...................... len:19 al:1
.........................................................AUUGCACUUaCCCCGGCCUUU.................... len:21 al:1
.........................................................AUUGCACUUGCCCCaGCCUUU.................... len:21 al:1
.........................................................uUUGCACUUGCCCCGGCCUUU.................... len:21 al:1
.........................................................AUUGCACUUGCCCCGGCCUUU.................... len:21 al:11
..........................................................UUGCACUUGCCCCGGCCUUU.................... len:20 al:4
...........................................................UGCACUUGCCCCGGCCUU..................... len:18 al:1
.............................................................CACUUGCCCCGGCCUUU.................... len:17 al:1