Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026863568.1:43517-43616 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_25443.ps.pdf
Locus Name: Cluster_25443
AUGAAGGAGGGCUUGUAUAAGGGCUGGUGUUGGUGAAAUGCAUUGUGAUGUUGUUGUAUUGCACUUGCCCCGGCCUUUAUACUUGUUUCCACCAAUACAA
.....(((((.(..(((((((((((((.((.((((.((((((............)))))).)))).)).)))))))))))))..)))))).......... (-37.70)
....................GGGCUGGUGUUGGUGAAAUGCA.......................................................... len:22 al:2
......................................................UcUAUUGCACUUGCCCCGGCCUUU...................... len:24 al:1
.......................................................cUAUUGCACUUGCCCCGGCCUUU...................... len:23 al:5
.......................................................aUAUUGCACUUGCCCCGGCCUUU...................... len:23 al:7
........................................................UAUUGCACUUGCCuCGGCCUU....................... len:21 al:1
........................................................UAUUGCACUcGCCCCGGCCU........................ len:20 al:1
........................................................UAUUGCACUUGCCCCGGCaUU....................... len:21 al:2
........................................................UAUUGCACUUGCCCaGGCCUUUA..................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCUgU...................... len:22 al:209
........................................................UAUgGCACUUGCCCCGGCCUUU...................... len:22 al:8
........................................................UAUUGuACUUGCCCCGGCCUUU...................... len:22 al:28
........................................................UcUUGCACUUGCCCCGGCCUUU...................... len:22 al:10
........................................................UAUUGCACUUGCCCCGGCCUUUAaAC.................. len:26 al:2
........................................................UAUUGCACUUGCCCCcGCCUUU...................... len:22 al:4
........................................................UAUcGCACUUGCCCCGGCCU........................ len:20 al:2
........................................................UAUUGCACUUGCCCCGGCCUUg...................... len:22 al:98
........................................................UAUUGCACUUGCCCCGGCCcUU...................... len:22 al:84
........................................................cAUUGCACUUGCCCCGGCCU........................ len:20 al:1
........................................................UAUUGCACUUGCCCCGGCCcU....................... len:21 al:8
........................................................UAUUGCACcUGCCCCGGCCUUU...................... len:22 al:87
........................................................UAUUGCACUUGCCCCGGCCUUUAUu................... len:25 al:15
........................................................UAUUGCACUgGCCCCGGCCUUU...................... len:22 al:11
........................................................UAUUGCACUUGCCCuGGCCUUUA..................... len:23 al:4
........................................................UAUUGCACUUGCCCCGGCCUUUAU.................... len:24 al:17
........................................................UAUUGCACUUGCCCCGcCCUUU...................... len:22 al:5
........................................................UAUUGaACUUGCCCCGGCCUUU...................... len:22 al:3
........................................................UAUUGgACUUGCCCCGGCCUUU...................... len:22 al:1
........................................................UAgUGCACUUGCCCCGGCCUUU...................... len:22 al:5
........................................................UAaUGCACUUGCCCCGGCCUUU...................... len:22 al:12
........................................................UAUcGCACUUGCCCCGGCCUUUA..................... len:23 al:4
........................................................UuUUGCACUUGCCCCGGCCUUU...................... len:22 al:6
........................................................UAUUuCACUUGCCCCGGCCUUU...................... len:22 al:7
........................................................UAUUGCACUUGCCCCGGCu......................... len:19 al:9
........................................................UAUUGCACUUGCCCCGGCCUUUAUc................... len:25 al:3
........................................................UAUUGCACUUGCCCCGGCCUUUAUAa.................. len:26 al:6
........................................................UAUUGCgCUUGCCCCGGCCUU....................... len:21 al:7
........................................................UAUUGuACUUGCCCCGGCCUUUA..................... len:23 al:1
........................................................UgUUGCACUUGCCCCGGCCUUUA..................... len:23 al:4
........................................................UAUUGCAaUUGCCCCGGCCUUU...................... len:22 al:3
........................................................UAUUGCACUUGCCCCGGCCUU....................... len:21 al:1565
........................................................UAUaGCACUUGCCCCGGCCUUU...................... len:22 al:4
........................................................UAaUGCACUUGCCCCGGCCUUUA..................... len:23 al:2
........................................................UAcUGCACUUGCCCCGGCCUUUA..................... len:23 al:2
........................................................UAUUGCACUUGCCCCGGCuUUUA..................... len:23 al:1
........................................................UAUUGCACUUaCCCCGGCCUU....................... len:21 al:2
........................................................UAUUGCACUUGCCCCGGCCUUUcU.................... len:24 al:2
........................................................UAUUGCACUUGCCCCGGCCUUaAU.................... len:24 al:1
........................................................UAUUGCACUaGCCCCGGCCUU....................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCCa........................ len:20 al:30
........................................................UAUUGCACUUGCCCCGGCCUcUA..................... len:23 al:2
........................................................UAUUGCACUUGCCCuGGCCUU....................... len:21 al:1
........................................................UAUUGCACUUGCCuCGGCCUUUAU.................... len:24 al:1
........................................................UAUUGCACUUGCCCuGGCCUUU...................... len:22 al:40
........................................................UAUUGCACUUGCCCCaGCCUUUA..................... len:23 al:2
........................................................UAUUGCACUUGCCCCGGCCUUUc..................... len:23 al:57
........................................................UAUUGCACUUGCCCCGGCCUUUAUAaU................. len:27 al:1
........................................................UAUUGCACUUGuCCCGGCCUUU...................... len:22 al:41
........................................................UAUUGCACUUGCCCCGGCuUUU...................... len:22 al:31
........................................................UgUUGCACUUGCCCCGGCCUUU...................... len:22 al:95
........................................................UAUUGCACUUGCCCCGGCCU........................ len:20 al:247
........................................................UAUcGCACUUGCCCCGGCCUUU...................... len:22 al:125
........................................................UAUUGCACUUGCCCCGGCCUa....................... len:21 al:64
........................................................UAUUGCACUcGCCCCGGCCUUUA..................... len:23 al:3
........................................................UAUUGCACUUGaCCCGGCCUUU...................... len:22 al:1
........................................................UAUUGCACUUGCCCCGGCgUU....................... len:21 al:2
........................................................UAUUGCACUUGCCgCGGCCUU....................... len:21 al:2
........................................................UAUUGCAaUUGCCCCGGCCUUUA..................... len:23 al:1
........................................................UAUUGCACUUuCCCCGGCCUUU...................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCa......................... len:19 al:7
........................................................UAUUGCACUUGCCCCGGCCUaU...................... len:22 al:12
........................................................UAUUGCACUUGCCgCGGCCUUU...................... len:22 al:23
........................................................UAUUGCACUUGCCCCGGCCUgUA..................... len:23 al:1
........................................................UAUUGCACcUGCCCCGGCCUU....................... len:21 al:3
........................................................UAUUGCACUUGCCCCGGCCgU....................... len:21 al:14
........................................................UAUUGCACUUGCCCCGGCCcUUA..................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCUUU...................... len:22 al:32567
........................................................UAUUGCcCUUGCCCCGGCCUUU...................... len:22 al:20
........................................................UAUUGCgCUUGCCCCGGCCUUU...................... len:22 al:123
........................................................UAUUGCAgUUGCCCCGGCCUUU...................... len:22 al:1
........................................................UAcUGCACUUGCCCCGGCCUUU...................... len:22 al:99
........................................................UAUUGCACcUGCCCCGGCCUUUA..................... len:23 al:4
........................................................UAUUGCACUaGCCCCGGCCUUU...................... len:22 al:10
........................................................UAUUGCACUUGCCCCGuCCUUU...................... len:22 al:1
........................................................UAUUGCACUUGCCCaGGCCUU....................... len:21 al:1
........................................................UAUUGCACaUGCCCCGGCCUUU...................... len:22 al:15
........................................................UAUUGCACUcGCCCCGGCCUUU...................... len:22 al:108
........................................................UAUcGCACUUGCCCCGGCCUUUAU.................... len:24 al:1
........................................................UAUUGCACUcGCCCCGGCCUU....................... len:21 al:7
........................................................UAUUGCACUUGCCCCGGu.......................... len:18 al:3
........................................................UAUUGCACUUGCCCCGGCCUUUAUAu.................. len:26 al:1
........................................................UAUUGCACUUGaCCCGGCCUU....................... len:21 al:1
........................................................UAUUGCACUUaCCCCGGCCUUU...................... len:22 al:27
........................................................UAUUGuACUUGCCCCGGCCUUUAU.................... len:24 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUAc.................... len:24 al:2
........................................................UAUUGCgCUUGCCCCGGCCUUUA..................... len:23 al:4
........................................................UAUUaCACUUGCCCCGGCCUUU...................... len:22 al:45
........................................................UAUUGCACUUGCCCCGGa.......................... len:18 al:3
........................................................UAUUGCACUUcCCCCGGCCUUU...................... len:22 al:1
........................................................UAUUGCACUUGCCCCGGuCUU....................... len:21 al:1
........................................................UAUUGCACUUGCCCCaGCCUU....................... len:21 al:5
........................................................UAUUGCACUUGCCCCGGCCUaUA..................... len:23 al:1
........................................................UAUUGCACUUGCaCCGGCCUUU...................... len:22 al:6
........................................................UgUUGCACUUGCCCCGGCCUU....................... len:21 al:4
........................................................UAUcGCACUUGCCCCGGCCUU....................... len:21 al:10
........................................................UAUUGCACUUGCCCCGGCgUUU...................... len:22 al:13
........................................................UAUUGCAuUUGCCCCGGCCUUU...................... len:22 al:24
........................................................UAUUGCACUUGCCCgGGCCUUUA..................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCg........................ len:20 al:6
........................................................UAUUGCACUUGCCCCGGCCc........................ len:20 al:34
........................................................UAUUGCACUUGCCCaGGCCUUU...................... len:22 al:16
........................................................UAUUGCACUUGCCaCGGCCUUU...................... len:22 al:7
........................................................cAUUGCACUUGCCCCGGCCUUUA..................... len:23 al:3
........................................................UAUUGCACUUGCCCCGGCC......................... len:19 al:26
........................................................UAUUGCACUUGCCCCGGCCUUc...................... len:22 al:3286
........................................................UAUUGCACUUGCCCCGGCCUUa...................... len:22 al:527
........................................................UAUUGCACUUGCCCgGGCCUU....................... len:21 al:1
........................................................UAUUGCACUgGCCCCGGCCUU....................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCCUc....................... len:21 al:161
........................................................UAgUGCACUUGCCCCGGCCUU....................... len:21 al:2
........................................................UAUUGCACUUGCCCCGGg.......................... len:18 al:1
........................................................UAUUGCACUUGCCCCGGaCUUU...................... len:22 al:1
........................................................UAUUGCACUUGCCCCGGCCUUaA..................... len:23 al:29
........................................................UAUUGCACUUGCCCCGaCCUU....................... len:21 al:1
........................................................UAUUGCACUgGCCCCGGCCUUUA..................... len:23 al:1
........................................................UAUUGCACUUGCCCCGGCCUcU...................... len:22 al:68
........................................................UAUUGCACUUGCCCCGGCCUUUuU.................... len:24 al:89
........................................................UAUUGCACUUGCCCCcGCCUU....................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCCaUU...................... len:22 al:133
........................................................UAUUGCACgUGCCCCGGCCUUU...................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCCaUUA..................... len:23 al:5
........................................................UAUUGCACUUGCCCCGGCaUUU...................... len:22 al:12
........................................................UAUUGCACUUGgCCCGGCCUUU...................... len:22 al:12
........................................................UAUUGCACUUGCCCCGGgCUUU...................... len:22 al:2
........................................................UAUUGCuCUUGCCCCGGCCUUU...................... len:22 al:15
........................................................UAUUGCACUUGCCCCGGCCUg....................... len:21 al:14
........................................................UAUUGCACUUGCCCCGGCCaU....................... len:21 al:5
........................................................UAUUGCACUUGCCCCGGCCgUU...................... len:22 al:14
........................................................UAUUGCACUUGCCCCGGCCUUUgU.................... len:24 al:3
........................................................cAUUGCACUUGCCCCGGCCUUU...................... len:22 al:108
........................................................UAUUGCACUUGCCCCGGuCUUU...................... len:22 al:34
........................................................UAUUGCACUUGCCCCGGCCUUUA..................... len:23 al:964
........................................................UAUUGCACUUGCCCCGGCCUUUu..................... len:23 al:701
........................................................cAUUGCACUUGCCCCGGCCUU....................... len:21 al:5
........................................................UAUUGCACUUGCCCCcGCC......................... len:19 al:1
........................................................UAUUGCACUUGCCCCGGCuUU....................... len:21 al:4
........................................................UAUUcCACUUGCCCCGGCCUUU...................... len:22 al:2
........................................................UAUUaCACUUGCCCCGGCCUUUA..................... len:23 al:5
........................................................UAUUGCACUUGCCCgGGCCUUU...................... len:22 al:34
........................................................aAUUGCACUUGCCCCGGCCUUU...................... len:22 al:22
........................................................UAUUGCAuUUGCCCCGGCCUUUA..................... len:23 al:2
........................................................UAUUGCACUUGCgCCGGCCUUU...................... len:22 al:2
........................................................UAUUGCACUUGCCCCGGCCUUUg..................... len:23 al:14
........................................................UAUUGCACUUGCCCCGGCCUUUAaA................... len:25 al:409
........................................................UAcUGCACUUGCCCCGGCCUU....................... len:21 al:4
........................................................UAUUGCACUUGCCCCGGuCU........................ len:20 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUAa.................... len:24 al:521
........................................................UAUUGCACUUGCuCCGGCCUUU...................... len:22 al:44
........................................................UAUUGCACUUGCCCCGaCCUUU...................... len:22 al:21
........................................................UAUUGCACUUGuCCCGGCCUUUA..................... len:23 al:3
........................................................UAUUGCACUUGCuCCGGCCUU....................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGC.......................... len:18 al:16
........................................................UAUgGCACUUGCCCCGGCC......................... len:19 al:1
........................................................UAUUGCACUUGCCuCGGCCUUU...................... len:22 al:48
........................................................UAUUGCcCUUGCCCCGGCCUUUA..................... len:23 al:2
........................................................UAUUGCACUUGCCCCuGCCUUU...................... len:22 al:5
........................................................UAUUGCACUUGCCCCGGCCUUUAcA................... len:25 al:3
........................................................UAaUGCACUUGCCCCGGCCUU....................... len:21 al:1
........................................................UAUUGCACUUGCCCCGGCCUUUAUA................... len:25 al:5
........................................................UAUUGuACUUGCCCCGGCCUU....................... len:21 al:2
........................................................UAUUGCACUUGCCCCGGCCUUUAg.................... len:24 al:77
........................................................UAUUGCACUUGCCCCGGCCUUUAgA................... len:25 al:72
........................................................UAUUGCACUUGCCCCaGCCUUU...................... len:22 al:30
........................................................UAUUGCAuUUGCCCCGGCCUU....................... len:21 al:2
........................................................UAUUGCACUUGCCgCGGCCUUUA..................... len:23 al:1
.........................................................AUUGCACUUGCCCCGGCCUa....................... len:20 al:1
.........................................................AUUGCACUUGCCCCGGCCU........................ len:19 al:1
.........................................................uUUGCACUUGCCCCGGCCUUU...................... len:21 al:1
.........................................................AUUGCACUUGCCCCGGCCUc....................... len:20 al:1
.........................................................AUUGCACUUGCCCCGGCCUUc...................... len:21 al:2
.........................................................AUUGCACUUGCCCCGGCCUUU...................... len:21 al:13
.........................................................AUUGCACUUGCCCCGGCCUUUA..................... len:22 al:1
..........................................................UUGCACUUGCCCCGGCCUUU...................... len:20 al:4
..........................................................UUGCACUUGCCCCGGCCUUUAUu................... len:23 al:1
..........................................................UUGCACUUGCCCCGGCCUU....................... len:19 al:2
............................................................GCACUUGCCCCGGCCUUU...................... len:18 al:2