Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026863091.1:83513-83609 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_24617.ps.pdf
Locus Name: Cluster_24617
GGCAUAGUGCAUUGGUGUACUUUCUCAUGUGUAUGGCUUAUGUAAUUCAAAACUGUAAGUCUUCACAAUGAGGGAAUAUACUUUUAGCAGUUUAAGU
.....(.(((...((((((.(((((((((((...(((((((((........)).)))))))..))).)))))))).))))))....))).)...... (-25.60)
....................UUUuUCAUGUGUAUGGCUUAUG....................................................... len:22 al:1
....................UUUCUCAUGUGUAcGGCUUAUG....................................................... len:22 al:2
....................UUUCUCAUGUGUAUGaCUUAUG....................................................... len:22 al:3
....................UUUCUCAUGUGUAUGGCUUAcG....................................................... len:22 al:1
....................UUUCUCAUGUGUAUGGCUUAUa....................................................... len:22 al:122
....................UUUCUCAUGUGUAUGGCcUAUG....................................................... len:22 al:3
....................UUUCUCAUGUGUAUGGCUUAU........................................................ len:21 al:4
....................UUUCUCAUGUGUAUGGCUUAUGUAgU................................................... len:26 al:1
....................UUUCUCAUGUGUAUGGCUUAc........................................................ len:21 al:2
....................UUUCUCAUGUGUAUGGCUUAUG....................................................... len:22 al:1454
....................UUUCUCAUGUGUAUaGCUUAUG....................................................... len:22 al:1
....................UUUCUCcUGUGUAUGGCUUAUG....................................................... len:22 al:1
....................cUUCUCAUGUGUAUGGCUUAUG....................................................... len:22 al:4
....................UUUCUCAUGcGUAUGGCUUAUG....................................................... len:22 al:7
....................UUUCUCAUGUGUAUGGCUUAUGaAA.................................................... len:25 al:6
....................UUUgUCAUGUGUAUGGCUUAUG....................................................... len:22 al:1
....................UUUCUCAUGUGUgUGGCUUAUG....................................................... len:22 al:4
....................UcUCUCAUGUGUAUGGCUUAUG....................................................... len:22 al:1
....................aUUCUCAUGUGUAUGGCUUAUG....................................................... len:22 al:2
....................UUUCUCAUGUGUAaGGCUUAUG....................................................... len:22 al:1
....................UUUCUCAUGUGUAUGGuUUAUG....................................................... len:22 al:2
....................UUUCUCAUGUGUAUGGCUUcUG....................................................... len:22 al:1
....................UUUCUCAUGUGUAUGGCUUAgG....................................................... len:22 al:2
....................UUUCUCAUGcGUAUGGCUUAU........................................................ len:21 al:2
....................UUUCUCAUGUGUAUGGCUUAUc....................................................... len:22 al:2
....................UUUCUCAUGUGUAUGGCUcAUG....................................................... len:22 al:3
....................UUUCUCAUGUGUAUGGCUUgUG....................................................... len:22 al:3
....................UUUCUCAUGUGcAUGGCUUAUG....................................................... len:22 al:8
....................UUUCUCAUGUGUAUGGCUUAUGUAAU................................................... len:26 al:25
....................UUUCUCAUGUGUAUGGCUUAUGa...................................................... len:23 al:18
....................UUUCUCgUGUGUAUGGCUUAUG....................................................... len:22 al:11
....................UUcCUCAUGUGUAUGGCUUAUG....................................................... len:22 al:8
....................UUUCUCAUGUGUAUGGCUUAUGUAAUU.................................................. len:27 al:2
....................UUUCUCAUGUGUAUGGCUU.......................................................... len:19 al:2
....................UUUCUCAUGUGUAUGGCUUAUGUA..................................................... len:24 al:2
....................UUUCUCAUGUGUAUGGCaUAUG....................................................... len:22 al:1
....................UUUCUCAUGUGaAUGGCUUAUG....................................................... len:22 al:1
....................UUUCcCAUGUGUAUGGCUUAUG....................................................... len:22 al:3
....................UUUCUCAUGUGUAUGGCUUAUGaA..................................................... len:24 al:5
....................UUUCUCAcGUGUAUGGCUUAUG....................................................... len:22 al:5
....................UUUCUCAUGUGUAUGGCUUAUGU...................................................... len:23 al:9
....................UUUCUCAUGUGUAUuGCUUAUG....................................................... len:22 al:1
....................UUUCUCAUGUGUAUGGCUUAUGcAAU................................................... len:26 al:1
....................UUUCUCAUGUGUAUGGCUUAUGUAAUUCA................................................ len:29 al:11
....................UUUCUCAUGUGUAUGGCUUAUGUAAUUC................................................. len:28 al:1
.....................UUCUCAUGUGUAUGGCUUAUGUAAUUCAA............................................... len:29 al:1
.....................UUCUCAUGUGUAUGGCUUAUGUAgU................................................... len:25 al:1
.....................UUCcCAUGUGUAUGGCUUAUGUAAU................................................... len:25 al:1
.....................UUCUCAUGUGUAUGGCUUAUGUAA.................................................... len:24 al:1
.....................UUCUCAUGUGUAUGGCUUAUGUAAc................................................... len:25 al:2
.....................UUCUCAUGUGUAUGGCUUAUGUAAU................................................... len:25 al:8
......................UCUCAUGUGUAUGGCUUAUGUAAU................................................... len:24 al:4
......................UCUCAUGUGUAUGGCUUAUGUAAUUCAA............................................... len:28 al:3
......................UCUCAUGUGUAUGGCcUAUGUAAU................................................... len:24 al:1
........................UCAUGUGUAUGGCUUAUGUAAU................................................... len:22 al:2
...............................UAUGGCUUAUGUAAUcCAAA.............................................. len:20 al:1
.............................................UUCAAAACUGUAAGUCUUCACAAUGA.......................... len:26 al:1
..................................................AACUGUAAGUCUUCACAAUGAGGGA...................... len:25 al:2
..................................................AACUGUAAGUCUUCACAAUGAGGGAu..................... len:26 al:1
..................................................AACUGUAAGUCUUCACAAUGAGGGAAU.................... len:27 al:1
..................................................AACUGUAAGUCUUCACAAUGA.......................... len:21 al:1
....................................................CUGUAAGUCUUCACAAUGAGGGA...................... len:23 al:5
.......................................................UAAGUCUUCACAAUGAGGGAAU.................... len:22 al:3