Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026862846.1:25929-26031 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_24004.ps.pdf
Locus Name: Cluster_24004
UGCAAUGAGGUUGUGUGGAUGCGCUUGAAUCUUUAGCUCAGACCUUGGUUUUGUAAGAGGUGAGCAAAGUUUCAAGUGUGUCUGUAUGCCUUAAAACAUCAGA
.....((((((.(((((((((((((((((.((((.(((((...((((......))))...))))))))).))))))))))))))))))))))).......... (-37.00)
...................UGCGCUUGAAUCUUUAGCUCAGAC............................................................ len:24 al:1
...................UGCGCUUGAAUCUUUAGCUCAGACa........................................................... len:25 al:1
....................GCGCUUGAAUCUUUAGCUCAGACa........................................................... len:24 al:1
....................GCGCUUGAAUCUUUAGCUCAGACCU.......................................................... len:25 al:1
....................GCGCUUGAAUCUUUAGCUCAGACC........................................................... len:24 al:13
....................GCGCUUGAAUCUUUAGCUCAGAC............................................................ len:23 al:3
....................GCGCUUGAAUCUUUAGCUCAGACCc.......................................................... len:25 al:1
....................GCGCUUGAAUCUUUAGCUCAGACu........................................................... len:24 al:5
.........................................................AaGUGAGCAAAGUUUCAAGUGUGU...................... len:24 al:6
..........................................................aGUGAGCAAAGUUUCAAGUGUGU...................... len:23 al:7
...........................................................cUGAGCAAAGUUUCAAGUGUGU...................... len:22 al:5
...........................................................GUGAGCAAAGUUUCAAGgGUGU...................... len:22 al:3
...........................................................GUGAGCAAAGaUUCAAGUGUGU...................... len:22 al:2
...........................................................GUGAGCAAAGUUUCAAGUGUGU...................... len:22 al:23876
...........................................................GUGcGCAAAGUUUCAAGUGUGU...................... len:22 al:11
...........................................................GUGAGCAAAGUUUCAAuUGUGU...................... len:22 al:4
...........................................................GUGAGCAAAGUUUCAAGUGUGUuU.................... len:24 al:7
...........................................................GUGAGuAAAGUUUCAAGUGUGU...................... len:22 al:28
...........................................................GUGAGCAAAGUUUgAAGUGUGU...................... len:22 al:15
...........................................................GUGAGCAAAGUUUCAAGUGUGa...................... len:22 al:434
...........................................................GUGAGCuAAGUUUCAAGUGUGU...................... len:22 al:10
...........................................................GUGAGCAAAGUUcCAAGUGUGUC..................... len:23 al:2
...........................................................GUGAGCAAAGUUUCAAGUGUGUu..................... len:23 al:1333
...........................................................GUGAGCAuAGUUUCAAGUGUGU...................... len:22 al:13
...........................................................GUGAGCAAAGUUUCAAGUGUGcC..................... len:23 al:1
...........................................................GUGAGCAAAuUUUCAAGUGUGU...................... len:22 al:2
...........................................................GUGAGCAAAGUUUCAAGUGUaU...................... len:22 al:15
...........................................................GUaAGCAAAGUUUCAAGUGUG....................... len:21 al:1
...........................................................GUGAGCAAAGUUgCAAGUGUGU...................... len:22 al:3
...........................................................GUGAGCAAAGUUUCAAGUG......................... len:19 al:4
...........................................................GUGAGCAAAGUUUCAAGUGUGc...................... len:22 al:3093
...........................................................GUGgGCAAAGUUUCAAGUGUGUC..................... len:23 al:1
...........................................................GUGAGCAAAGUUUCAAGUuUGU...................... len:22 al:28
...........................................................GUGAGCAAAGUUUCAAGaGUGU...................... len:22 al:9
...........................................................uUGAGCAAAGUUUCAAGUGUGU...................... len:22 al:18
...........................................................GUGAGCAAAGUUUCAAGUaUGU...................... len:22 al:15
...........................................................GUGAGCAAAGUUUCAAGUGUcU...................... len:22 al:5
...........................................................GUGAGCAAAGgUUCAAGUGUGU...................... len:22 al:4
...........................................................GUGAGCAAAGUUUCAAaUGUGU...................... len:22 al:17
...........................................................GUGAGCAAAGUUUCAAGUGUGUa..................... len:23 al:128
...........................................................GUGAGCAgAGUUUCAAGUGUGU...................... len:22 al:98
...........................................................GUGAGCAAAGUUUCgAGUGUGU...................... len:22 al:135
...........................................................GUGAGCAAAGUUUCuAGUGUGU...................... len:22 al:11
...........................................................GUGAGCAAAGUUUgAAGUGUGUC..................... len:23 al:1
...........................................................GUGAGCAAAGUUUCAAGcGUGUC..................... len:23 al:2
...........................................................GUGAGCAAAGUUUCAAGUGUGUg..................... len:23 al:12
...........................................................GUGAGCAAAGUUcCAAGUGUG....................... len:21 al:1
...........................................................GUGAGCAAAGUUUCAAGUGgGU...................... len:22 al:11
...........................................................GUGAGCAAAGUUUCAuGUGUGU...................... len:22 al:7
...........................................................GUGAGCAAAGUUcCAAGUGUGU...................... len:22 al:110
...........................................................GUGAGCAAAGUUUCAAGUGUGg...................... len:22 al:235
...........................................................GUGAaCAAAGUUUCAAGUGUGU...................... len:22 al:12
...........................................................GgGAGCAAAGUUUCAAGUGUGU...................... len:22 al:5
...........................................................aUGAGCAAAGUUUCAAGUGUG....................... len:21 al:2
...........................................................GUGAGCAAAGUUUCAAGUGUG....................... len:21 al:225
...........................................................GUGAGCAAAGcUUCAAGUGUGU...................... len:22 al:80
...........................................................GaGAGCAAAGUUUCAAGUGUGU...................... len:22 al:17
...........................................................GUGAGCAAAGUgUCAAGUGUGU...................... len:22 al:7
...........................................................GUGAGgAAAGUUUCAAGUGUGU...................... len:22 al:1
...........................................................GUGAGCAAAGUUUCAAGUGcGU...................... len:22 al:65
...........................................................GUGgGCAAAGUUUCAAGUGUGU...................... len:22 al:105
...........................................................GUGAGCgAAGUUUCAAGUGUG....................... len:21 al:2
...........................................................GUGAGCAAAGUUaCAAGUGUGU...................... len:22 al:3
...........................................................GUGAGCAAuGUUUCAAGUGUGU...................... len:22 al:16
...........................................................aUGAGCAAAGUUUCAAGUGUGU...................... len:22 al:84
...........................................................GUGAGCAAAGUaUCAAGUGUGU...................... len:22 al:1
...........................................................GUGAGCAAAGUUUuAAGUGUGU...................... len:22 al:17
...........................................................GUGAuCAAAGUUUCAAGUGUGU...................... len:22 al:1
...........................................................GUGAGCAAAGUUUCAAGUGUu....................... len:21 al:3
...........................................................GUGAGCAAAGcUUCAAGUGUGUC..................... len:23 al:2
...........................................................GUGAGCAAAaUUUCAAGUGUGU...................... len:22 al:16
...........................................................GUGAGCAAAGUUUCAAGU.......................... len:18 al:1
...........................................................GUGgGCAAAGUUUCAAGUGU........................ len:20 al:1
...........................................................GUGAGCAAAGUUUCAAGUGUGUC..................... len:23 al:154
...........................................................GUGAGCAAAGUUUCAAGUGUuU...................... len:22 al:4
...........................................................GUGAGCAAAGUUUCAAGUGU........................ len:20 al:13
...........................................................GUGAGCAAAGUUUCcAGUGUGU...................... len:22 al:5
...........................................................GUaAGCAAAGUUUCAAGUGUGU...................... len:22 al:19
...........................................................GUGAGCAAAGUUUCAAGUGUa....................... len:21 al:27
...........................................................GUGAGaAAAGUUUCAAGUGUGU...................... len:22 al:1
...........................................................GUGAGCgAAGUUUCAAGUGUGU...................... len:22 al:64
...........................................................GUuAGCAAAGUUUCAAGUGUGU...................... len:22 al:4
...........................................................GUGAGCAAAGUUUCAcGUGUGU...................... len:22 al:7
...........................................................GUGAGCAAgGUUUCAAGUGUG....................... len:21 al:2
...........................................................GUGAGCcAAGUUUCAAGUGUGU...................... len:22 al:9
...........................................................GUGAGCAAAGUUUCAAGUGaGU...................... len:22 al:3
...........................................................GUGAGCAAAGUcUCAAGUGUGU...................... len:22 al:74
...........................................................GUGAGCAAAGUUUCAgGUGUGU...................... len:22 al:82
...........................................................GUGuGCAAAGUUUCAAGUGUGU...................... len:22 al:11
...........................................................GUGAGCAAAGUUUCAAGcGUGU...................... len:22 al:55
...........................................................GUGAGCAAgGUUUCAAGUGUGU...................... len:22 al:104
...........................................................GUGAGuAAAGUUUCAAGUGUGUC..................... len:23 al:1
...........................................................GUGAGCAAAGUUUCAAGUGUGUCgGU.................. len:26 al:1
...........................................................GUGAGCAcAGUUUCAAGUGUGU...................... len:22 al:6
...........................................................GUGAGCAAcGUUUCAAGUGUGU...................... len:22 al:12
...........................................................GcGAGCAAAGUUUCAAGUGUGU...................... len:22 al:70
............................................................UGAGCAAAGUUUCAAGUGUGa...................... len:21 al:1
............................................................UGAGCAAAGUUUCAAGUGUGU...................... len:21 al:25
............................................................UGAGgAAAGUUUCAAGUGUGU...................... len:21 al:1
............................................................UGAGCAAAGUUUCAAGUGUGUC..................... len:22 al:1
............................................................UGAGCAAAGUUUCAAGUGUGUu..................... len:22 al:7
............................................................UGAGCAAAGUUUCAAGUGUGUg..................... len:22 al:1