Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026862839.1:196888-196986 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_23993.ps.pdf
Locus Name: Cluster_23993
UACAGAGGUCACCCCUGAGAGUCAGCUCAUCAUCGGGUAGCCUUGGGUUAGAUAACAAGCUGCCUGAUGAAGAGCUGUCCUUUCUAGGUGAAUAACAAC
........(((((...(((((.((((((.((((((((((((.(((..........))))))))))))))).))))))..)))))..)))))........ (-44.90)
.....................UCAGCUCAUCAUCGGGUAGCCUg....................................................... len:23 al:1
.....................UCAGCUCAUCAUCGGGUAGCCUc....................................................... len:23 al:7
.....................UCAGCUCAUCAUCGGGcAGCCUU....................................................... len:23 al:1
.....................UCAGuUCAUCAUCGGGUAGCCU........................................................ len:22 al:1
.....................UCAGCUCAUCAUCGGGUAGCCUUGa..................................................... len:25 al:7
.....................UCAGCUCAUCAUCGGGUAGCCUUG...................................................... len:24 al:32
.....................UCAGCUCAUCAUCGGGUAGCCUUc...................................................... len:24 al:1
.....................UCAGCUCAUCAUCGGGUAGCCU........................................................ len:22 al:22
.....................UCAGCUCAUCAUCGGGUAGCCUa....................................................... len:23 al:2
.....................UCAGCcCAUCAUCGGGUAGCCUUG...................................................... len:24 al:1
.....................UCAGCUCAUCAUCGGGUAGCC......................................................... len:21 al:1
.....................UCAGCUCAUCAUCGGGUAGCCa........................................................ len:22 al:2
.....................UCAGCUCAUCAUCGGGUAGCCUUa...................................................... len:24 al:7
.....................UCAGCUCAUCAUCGGGUAGCCUU....................................................... len:23 al:51
.....................UCAGCUCAUCAUCGGGUAGCCc........................................................ len:22 al:1
.....................UCAGCUCAUCAUCGGGUAGCCUUu...................................................... len:24 al:6
......................CAGCUCAUCAUCGGGUAGCCUUc...................................................... len:23 al:9
......................CAGCUCAUCAUCGGGUAGCCUgG...................................................... len:23 al:1
......................CgGCUCAUCAUCGGGUAGCCUU....................................................... len:22 al:6
......................CAGCUCAUCAUCGGGUAGCCUUGc..................................................... len:24 al:4
......................CAuCUCAUCAUCGGGUAGCCU........................................................ len:21 al:1
......................CAGCUCAUCAUCGGGUAGCCUa....................................................... len:22 al:24
......................CAGCUCAUCAUCGGGUAGCCUUGGG.................................................... len:25 al:1
......................uAGCUCAUCAUCGGGUAGCCUU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGGUAGCCUUGu..................................................... len:24 al:40
......................CAGCUCAUCAUCGGGcAGCCUU....................................................... len:22 al:5
......................CAGCUCAUCAUCGGGUAGgCUU....................................................... len:22 al:2
......................CAGCcCAUCAUCGGGUAGCCUU....................................................... len:22 al:4
......................CAGCUCAUCAUCGGGUAGCuUUG...................................................... len:23 al:2
......................CAGCUCAUCgUCGGGUAGCCUUG...................................................... len:23 al:2
......................CAGCUCAUCAUCGGGUAaCCUU....................................................... len:22 al:1
......................CAGCUCAUCAcCGGGUAGCCUUG...................................................... len:23 al:1
......................CAGCUCAUCAUCGGGUuGCCUU....................................................... len:22 al:1
......................CAGuUCAUCAUCGGGUAGCCU........................................................ len:21 al:1
......................CAGCUCAUCAUCGGGUcGCCUU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGGUAGC.......................................................... len:19 al:3
......................CAGCUCAcCAUCGGGUAGCCUU....................................................... len:22 al:3
......................CAGCUCAUCAUCGGGUAGuCUU....................................................... len:22 al:2
......................CAGCUCAUCAUCGGGUAGCCUUaG..................................................... len:24 al:4
......................CAGCUCAUCAUCGGGUAGCCUUGaG.................................................... len:25 al:21
......................CAGCUCAUCAUCGGGUAGCCUg....................................................... len:22 al:8
......................CAGCUCAUCAUCGGGUAGCCUUa...................................................... len:23 al:265
......................CAGuUCAUCAUCGGGUAGCCUUG...................................................... len:23 al:2
......................CAGCUuAUCAUCGGGUAGCCUUG...................................................... len:23 al:2
......................CAGCUCAUCAUCGGGUAGCaUUG...................................................... len:23 al:1
......................CAGCUCAUCAUuGGGUAGCCUU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGGUAGCCUUGa..................................................... len:24 al:163
......................CAGCUCAcCAUCGGGUAGCCUUG...................................................... len:23 al:3
......................CAGCaCAUCAUCGGGUAGCCUUG...................................................... len:23 al:3
......................CAGCUCAUCAUCGGGUAGCCUUGGa.................................................... len:25 al:4
......................CAGCUCAUCAUCGGGUAGCCcUG...................................................... len:23 al:2
......................CAGCUCAUCAUCGGGUgGCCUU....................................................... len:22 al:5
......................CAaCUCAUCAUCGGGUAGCCUU....................................................... len:22 al:3
......................CAGCUCAUCAUCGGGUAGCuUU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGaUAGCCUU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGGUAGCCg........................................................ len:21 al:1
......................CAGCUCAUCAUCGGGUAGCaUU....................................................... len:22 al:1
......................CAGCUCAUuAUCGGGUAGCCUU....................................................... len:22 al:2
......................CAGCUCAUCAUCGGGUAGCCUUu...................................................... len:23 al:112
......................CAGCUCAUCAUCGGcUAGCCUUG...................................................... len:23 al:1
......................CuGCUCAUCAUCGGGUAGCCUUG...................................................... len:23 al:2
......................CAGgUCAUCAUCGGGUAGCCUUG...................................................... len:23 al:1
......................CAGCUCAUCAUaGGGUAGCCUUG...................................................... len:23 al:1
......................CAGCUCAUCAUCGGGUAGCCc........................................................ len:21 al:10
......................CAGCUCAUCAUCGaGUAGCCUU....................................................... len:22 al:2
......................CAaCUCAUCAUCGGGUAGCCU........................................................ len:21 al:1
......................CAGCUCAUCAUCGGGUAGCCUU....................................................... len:22 al:1057
......................CAGCUCAUCAUCGGGUAGCCUUG...................................................... len:23 al:969
......................CAGCUCAUCgUCGGGUAGCCU........................................................ len:21 al:1
......................CAGCUCAUCAUCGGGUAGCCUcG...................................................... len:23 al:3
......................CAGCUCAUCAUCGGGUAGCCcU....................................................... len:22 al:1
......................CAGCUCcUCAUCGGGUAGCCUU....................................................... len:22 al:1
......................uAGCUCAUCAUCGGGUAGCCUUG...................................................... len:23 al:1
......................CAGCUCAUCAUCGGGUAGCCU........................................................ len:21 al:98
......................CAGCUCAUuAUCGGGUAGCCUUG...................................................... len:23 al:1
......................CAGCUCAUCgUCGGGUAGCCUU....................................................... len:22 al:5
......................CAGCUCAUCAUCaGGUAGCCUU....................................................... len:22 al:2
......................CAGCUCAUCAcCGGGUAGCCUU....................................................... len:22 al:1
......................CAGCUCgUCAUCGGGUAGCCUU....................................................... len:22 al:4
......................CgGCUCAUCAUCGGGUAGCCUUG...................................................... len:23 al:4
......................CAGCUCAUCAUCGGGUAGCCaU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGGUgGCCUUG...................................................... len:23 al:2
......................CAGCcCAUCAUCGGGUAGCCUUG...................................................... len:23 al:2
......................CAGCUCAUCAUCGaGUAGCCUUG...................................................... len:23 al:1
......................CAGCUuAUCAUCGGGUAGCCUU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGGUAGCCUc....................................................... len:22 al:111
......................CAGCUCAUCAUCGGGUAGCCUUGG..................................................... len:24 al:8
......................CAGCUCAUCAgCGGGUAGCCUU....................................................... len:22 al:1
......................CAGCUCAUCAUCGGGUAGCCa........................................................ len:21 al:14
......................CAGCUCAUCAUCGGGUAGCCgU....................................................... len:22 al:13
......................CAaCUCAUCAUCGGGUAGCCUUG...................................................... len:23 al:5
.......................AGCUCAUCAUCGGGUAGCCU........................................................ len:20 al:1
.......................AGCUCAUCAUCGGGUAGCCUUu...................................................... len:22 al:1
.......................AGCUCAUCAUCGGGUAGCCUUa...................................................... len:22 al:2
.......................AGCUCAUCAUCGGGUAGCCUUG...................................................... len:22 al:7
.......................AGCUCAUCAUCGGGUAGCCUU....................................................... len:21 al:4
........................GCcCAUCAUCGGGUAGCCUU....................................................... len:20 al:1
.........................CUCAUCAUCGGGUAGCCUUG...................................................... len:20 al:1
.........................................................AGCUGCCUGAUGAAGAGCUGU..................... len:21 al:3
.........................................................AGCUGCCUGAUGAAGAGCUGUCCa.................. len:24 al:6
.........................................................AGCUGCCUGAUGAAGAGCUGUCa................... len:23 al:3
.........................................................AGCUGCCUGAUGAAGAGCUGUu.................... len:22 al:5
.........................................................AGCUGCCUGAUGAgGAGCUGUCC................... len:23 al:1
.........................................................AGCUaCCUGAUGAAGAGCUGUCC................... len:23 al:1
.........................................................AGCUGCCUGAUGAAGAGC........................ len:18 al:1
.........................................................AGCUGCCUGAUGAAGAGCUGc..................... len:21 al:1
.........................................................AGCUGCCUGAUGAAGAGCUGUCu................... len:23 al:12
.........................................................AGCUGCCUGAUGAAGAGCUGUCC................... len:23 al:57
.........................................................AGCUGCCUGAUGAAGAGCUGUC.................... len:22 al:10
.........................................................AGCUGCCUGAUGAAGAGCUG...................... len:20 al:3