Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026852524.1:285406-285505 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_2042.ps.pdf
Locus Name: Cluster_2042
UUGGCUGAAUAAGUUUGUGCCACCAAACUAACUGUUGAUGCAUUGAUUCUUAUUUGUAUCACAGCUGGCUUGAGUGAGCAGAAUACAGCUAAGUUCAACU
(((((((.......((.(((((((((.(((.((((.((((((............)))))))))).))).))).))).))).))..)))))))........ (-28.80)
UUGGCUGAAUAAGUUUGUGC................................................................................ len:20 al:1
.UGGCUGAAUgAGUUUGUGC................................................................................ len:19 al:2
.UGGCUGAAUAAGUUUGUGu................................................................................ len:19 al:18
.UGGCUGAAUAAGUUUGUGC................................................................................ len:19 al:50
.UGGCUGAAUAAGUUUGUGa................................................................................ len:19 al:2
.UGGCUGAAUAAGcUUGUGC................................................................................ len:19 al:1
.cGGCUGAAUAAGUUUGUGC................................................................................ len:19 al:2
...................CCACCAAACUAACUGUUGAUGCA.......................................................... len:23 al:18
...................CCACCAAACUAACUGUUGAUGCAa......................................................... len:24 al:1
...................CCACCAAACUAACcGUUGAUGCA.......................................................... len:23 al:1
...................CCACCAAACUAACUGUUGAUG............................................................ len:21 al:1
...................CCACCAAACUAACUGUUGAUGu........................................................... len:22 al:3
...................CCACCAAACUAuCUGUUGAUGC........................................................... len:22 al:1
...................CCACCAAACcAACUGUUGAUGC........................................................... len:22 al:1
...................CCACCAAACUAACUGUUGAUGC........................................................... len:22 al:7
....................CACCAAACUAuCUGUUGAUGCA.......................................................... len:22 al:6
....................CACCAAACUAACUGUUGAUGCu.......................................................... len:22 al:2
....................CAgCAAACUAACUGUUGAUGCA.......................................................... len:22 al:1
....................CACCAAACUAACUGUUGAUGu........................................................... len:21 al:7
....................CACCAAACUAACUGUUGAcGCA.......................................................... len:22 al:1
....................CACCAAACUAACUGUUGAUGgA.......................................................... len:22 al:1
....................CACCAAACUAACUGUUGAUGCg.......................................................... len:22 al:2
....................CACCAAACUAACUGUUGAUGCAc......................................................... len:23 al:1
....................CACCAAACUAuCUGUUGAUGCAUU........................................................ len:24 al:1
....................CACCAAACUAuCUGUUGAUGC........................................................... len:21 al:8
....................CACCAAACUAACUGUUGAUGCAU......................................................... len:23 al:4
....................CACCAAACUAACUGUUGAUGCAa......................................................... len:23 al:1
....................CACCAgACUAACUGUUGAUGCA.......................................................... len:22 al:1
....................CACCAAACUAACUGUUGAUGCA.......................................................... len:22 al:55
....................CACCAAACUAACUGUUGAUGC........................................................... len:21 al:18
......................................................UaUAUCACAGCUGGCUUGAGUGAGC..................... len:25 al:1
......................................................UcUAUCACAGCUGGCUUGAGUGAGCA.................... len:26 al:1
......................................................gGUAUCACAGCUGGCUUGAGUGAGC..................... len:25 al:2
......................................................UcUAUCACAGCUGGCUUGAGUGAGC..................... len:25 al:5
.......................................................cUAUCACAGCUGGCUUGAGUG........................ len:21 al:10
.......................................................uUAUCACAGCUGGCUUGAGUGAGC..................... len:24 al:2
.......................................................cUAUCACAGCUGGCUUGAGUGAGCA.................... len:25 al:3
.......................................................aUAUCACAGCUGGCUUGAGUGAGC..................... len:24 al:11
.......................................................cUAUCACAGCUGGCUUGAGUGAGC..................... len:24 al:206
........................................................UAcCACAGCUGGCUUGAGUGAGCA.................... len:24 al:77
........................................................UcUCACAGCUGGCUUGAGUG........................ len:20 al:19
........................................................UAUCACAGCUuGCUUGAGU......................... len:19 al:1
........................................................UAUCACAGCUGGCUUGAGaGAGC..................... len:23 al:395
........................................................aAUCACAGCUGGCUUG............................ len:16 al:1
........................................................UgUCACAGCUGGCUUG............................ len:16 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAAg................ len:28 al:1
........................................................UAcCACAGCUGGCUUGAGUGA....................... len:21 al:7
........................................................UAUCuCAGCUGGCUUGAGUGAGCA.................... len:24 al:7
........................................................UAUCACcGCUGGCUUGAGUGAGC..................... len:23 al:999
........................................................UAUCACAGCUGGCcUGAGUGAGCAG................... len:25 al:2
........................................................UAUCACAGCUGGCUUGgGUGAGC..................... len:23 al:8062
........................................................aAUCACAGCUGGCUUGAGUGAG...................... len:22 al:5
........................................................UAUCACAGCUGGCUUGAGUGAGCg.................... len:24 al:572
........................................................UAUCACAGCUGGCUUGgGU......................... len:19 al:7
........................................................UAUCACAGCUGGCUUaAGUGAGCA.................... len:24 al:10
........................................................UAUCACAaCUGGCUUGAGUG........................ len:20 al:36
........................................................UAUCACAGCUGGCUUGAGUGcGC..................... len:23 al:538
........................................................UAUCAuAGCUGGCUUGAGUGAGCA.................... len:24 al:13
........................................................UAUCACAGCUGGCUUGAGUaAGCA.................... len:24 al:14
........................................................UAUCACAGCUGcCUUGAGUG........................ len:20 al:3
........................................................UgUCACAGCUGGCUUGAGUGAGCA.................... len:24 al:73
........................................................UAUCACAGCcGGCUUGAGU......................... len:19 al:2
........................................................UAUCACAGCUGGCUUGAGUGAGCAaAA................. len:27 al:417
........................................................UAUCACAGCUGGCUUGAGUaA....................... len:21 al:13
........................................................UAUCACAGCcGGCUUGAGUGAG...................... len:22 al:18
........................................................UAUuACAGCUGGCUUGAGUGAGCA.................... len:24 al:8
........................................................UAUCACAGCUGGCUgGAGUGAG...................... len:22 al:1
........................................................UAUCACAGCUGGCUUGAGUuAGCA.................... len:24 al:1
........................................................UAUCACAGCUGGCUUGAGUGc....................... len:21 al:7
........................................................UAUCACAGCUGGCUUGAGa......................... len:19 al:27
........................................................UAUCACAGCUGGCUUGAGUGgGCA.................... len:24 al:144
........................................................UAUCACAGCUuGCUUGAGUG........................ len:20 al:9
........................................................UAUCACAGCUGGCgUGAGU......................... len:19 al:2
........................................................UAUCACAuCUGGCUUGAGUGAG...................... len:22 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAAaA............... len:29 al:1
........................................................UAUCACAGCUGGCUUGAGUc........................ len:20 al:100
........................................................UAUCACAGCUGGCUaGAGUGAGC..................... len:23 al:817
........................................................UAUCACAGCUGGCUUGAa.......................... len:18 al:33
........................................................UAUCACAGaUGGCUUGAGUG........................ len:20 al:2
........................................................UAUCACAGCUGGCUUGAGUGA....................... len:21 al:2038
........................................................UAUCACAGCUGGCUUGAGgGA....................... len:21 al:1
........................................................UgUCACAGCUGGCUUGAGU......................... len:19 al:2
........................................................UAUgACAGCUGGCUUGAGUGAGCA.................... len:24 al:4
........................................................UcUCACAGCUGGCUUGAGUGAG...................... len:22 al:2
........................................................UAUCACAGCcGGCUUGAGUGA....................... len:21 al:3
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAu................. len:27 al:2
........................................................cAUCACAGCUGGCUUGAGUGAG...................... len:22 al:23
........................................................UAUCACAGCgGGCUUGAGUGAGCA.................... len:24 al:13
........................................................UAUCACAGCUGaCUUGAGUGA....................... len:21 al:2
........................................................UAUCACuGCUGGCUUGAGUGAGCA.................... len:24 al:18
........................................................UAUCACAGCUaGCUUGAGUG........................ len:20 al:42
........................................................UAUCACAGCUGGCgUGAGUG........................ len:20 al:37
........................................................UuUCACAGCUGGCUUGAGUGAG...................... len:22 al:1
........................................................gAUCACAGCUGGCUUGAGUGAGC..................... len:23 al:173
........................................................UAUCACAGCUGGgUUGAGUGAGC..................... len:23 al:103
........................................................UAUCAuAGCUGGCUUGAGUGAGC..................... len:23 al:1376
........................................................UAUCAgAGCUGGCUUGAGUGAGC..................... len:23 al:17
........................................................UAUCcCAGCUGGCUUGAG.......................... len:18 al:1
........................................................UAUCACAGCUGaCUUGAGUGAGC..................... len:23 al:1852
........................................................UAUCACAGaUGGCUUGAGUGAGC..................... len:23 al:231
........................................................UAUCACAGCUGGCUcGAGUGAGCA.................... len:24 al:69
........................................................UAUCACAGCUGGCUUGAGUGAGg..................... len:23 al:2354
........................................................UAUCACAGCUGGCUUGAcUGAGCA.................... len:24 al:8
........................................................UAUCACAGCUGGCUgGAGUGA....................... len:21 al:1
........................................................UAUCuCAGCUGGCUUGAGUGAGC..................... len:23 al:857
........................................................UAgCACAGCUGGCUUGAGUG........................ len:20 al:3
........................................................UAUCACAGCUaGCUUGAGUGA....................... len:21 al:3
........................................................UAUCACAGCUGGCcUGAGU......................... len:19 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAcA.................. len:26 al:14
........................................................gAUCACAGCUGGCUUGAGUGAGCA.................... len:24 al:2
........................................................UAUCACAGCUGGaUUGAGUGAGC..................... len:23 al:207
........................................................UAaCACAGCUGGCUUGAGUGAG...................... len:22 al:2
........................................................UAUCACAGCUGGCUcGAGU......................... len:19 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGgA.................... len:24 al:3
........................................................UAUCACAGCUGGCUUGAc.......................... len:18 al:1
........................................................UAUCACAGCUGGCgUGAGUGAGCA.................... len:24 al:19
........................................................UAUCACAGCaGGCUUGAGUGAGCA.................... len:24 al:15
........................................................UAUCACAGCUGGCUUaAGUGAG...................... len:22 al:3
........................................................UuUCACAGCUGGCUUGAGUGAGCA.................... len:24 al:7
........................................................UgUCACAGCUGGCUUGAG.......................... len:18 al:3
........................................................UAUCACAGCUGGCUUGAGaG........................ len:20 al:29
........................................................UAUCACAGCUGGCUUGAcUGAG...................... len:22 al:1
........................................................UAaCACAGCUGGCUUGAGUGAGCA.................... len:24 al:14
........................................................UAUCACAaCUGGCUUG............................ len:16 al:1
........................................................UAUCACAGCUaGCUUGAGUGAGCA.................... len:24 al:14
........................................................UAUCACAGCUGGCUUaAGUGAGC..................... len:23 al:1049
........................................................UAUgACAGCUGGCUUGAGUGAGC..................... len:23 al:343
........................................................cAUCACAGCUGGCUUGAGUG........................ len:20 al:199
........................................................UAUCACAGCUGaCUUGAGU......................... len:19 al:2
........................................................UAUCACAGCUGGCUUGAGUaAGC..................... len:23 al:933
........................................................UAUCcCAGCUGGCUUGAGUG........................ len:20 al:16
........................................................UAUCACAGCUGGCUUGAGUGAGCAGgA................. len:27 al:1
........................................................UAUCACAGCUGGCUUGAuUGAGCA.................... len:24 al:1
........................................................UAUCACAGCUGGCUUGAcUGAGC..................... len:23 al:72
........................................................UAUCACAGCUGGCUUGAGUGAGaA.................... len:24 al:13
........................................................UAUCACAGCUGGCUUGAGUGAGCAGg.................. len:26 al:5
........................................................UAUCACAGCUGGCUUGAGUGAGCAcAAU................ len:28 al:5
........................................................UAUCACAGCUuGCUUGAGUGAGCA.................... len:24 al:3
........................................................UAUCACAuCUGGCUUGAGUGAGC..................... len:23 al:158
........................................................UAUCACAaCUGGCUUGAGU......................... len:19 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAc................... len:25 al:783
........................................................UAUCACAGCUGGCUcGAGUG........................ len:20 al:90
........................................................UAUCACAGCUGGCUUGA........................... len:17 al:1
........................................................UAUCACAGCUGGCaUGAGUGAGCA.................... len:24 al:5
........................................................UAUCAaAGCUGGCUUGAGU......................... len:19 al:1
........................................................UAUCACAGCUGGCUUGAGUGcG...................... len:22 al:3
........................................................UAUCACAGCaGGCUUGAGUGAG...................... len:22 al:6
........................................................UAUCACAGCUGGCUUGAGUGAGCAcAA................. len:27 al:5
........................................................UAUCACAGCUGGCUUGAaUGA....................... len:21 al:1
........................................................UAUCACAGCUGGCcUGAG.......................... len:18 al:1
........................................................UAUCACAGuUGGCUUGAGUGA....................... len:21 al:1
........................................................UAUCACAGCUGGCUUGcGUGAGC..................... len:23 al:428
........................................................UAUCACAGCUGGCaUGAGUGAGC..................... len:23 al:527
........................................................aAUCACAGCUGGCUUGAGUGAGC..................... len:23 al:1200
........................................................UAUCACAGCUGGCUUuAGUGAGCA.................... len:24 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAaAAUA............... len:29 al:2
........................................................cAUCACAGCUGGCUUGAGUGAGC..................... len:23 al:7712
........................................................UAUCACgGCUGGCUUGAGUGAGCA.................... len:24 al:87
........................................................UAUCACAGCUGGCUUGgGUGAG...................... len:22 al:20
........................................................UAUCACAGCUGGCUaGAGUGAG...................... len:22 al:2
........................................................UAUCACAGCUGGaUUGAGUGAGCA.................... len:24 al:3
........................................................UAUCACAGCUGGCUUGAGUuAGC..................... len:23 al:115
........................................................UAUCACAGCUGGCUUuAGUGAGC..................... len:23 al:90
........................................................UAUCACAGCUGGCUcGAGUGAGCAGA.................. len:26 al:1
........................................................UAUCACAGCaGGCUUGAGU......................... len:19 al:4
........................................................UAUCACAGCcGGCUUGAGUGAGC..................... len:23 al:5288
........................................................UAUCACAGCUGGCUUGgGUGAGCA.................... len:24 al:104
........................................................UAUCACAGCgGGCUUGAGUGAG...................... len:22 al:2
........................................................UAUCACAGCUGcCUUGAGUGAGC..................... len:23 al:102
........................................................UAUCgCAGCUGGCUUGAG.......................... len:18 al:1
........................................................UAUCACAGCUGGCUUGAGcGA....................... len:21 al:3
........................................................UAUCACAGCUGGCUUGAGUcAGC..................... len:23 al:33
........................................................UAUCACgGCUGGCUUGAGUGAG...................... len:22 al:21
........................................................UAUCACuGCUGGCUUGAGU......................... len:19 al:3
........................................................UAUCACAGCUGGCUgGAGU......................... len:19 al:1
........................................................UAUCACAGCUGGCUUaAGUGA....................... len:21 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAuAA................. len:27 al:51
........................................................UAUCACcGCUGGCUUGAGUGAG...................... len:22 al:5
........................................................UAUCACAGCUGGCUUGAGcGAG...................... len:22 al:8
........................................................UAUCACAGCUGGCUUGAGUGAaC..................... len:23 al:1747
........................................................UAUCACAGCUGGCUUGAaUGAG...................... len:22 al:2
........................................................UAUCACAGCUGGCUUGAGUGAcC..................... len:23 al:177
........................................................UAUCACAGCUGGCUUGAGc......................... len:19 al:98
........................................................UAUCACAGCUGGCUU............................. len:15 al:1
........................................................UAUCACAGCUGGCgUGAGUGA....................... len:21 al:2
........................................................UAUCACAGCUGGuUUGAGUGAGCA.................... len:24 al:27
........................................................UAUCgCAGCUGGCUUGAGU......................... len:19 al:9
........................................................UAUCAuAGCUGGCUUGAGUG........................ len:20 al:32
........................................................UAaCACAGCUGGCUUGAGUGAGC..................... len:23 al:740
........................................................UAUCACAGCUGGCUgGAGUGAGC..................... len:23 al:1349
........................................................UAUCACAGCUuGCUUGAGUGA....................... len:21 al:1
........................................................UAUCACgGCUGGCUUGAGUGAGC..................... len:23 al:7328
........................................................UAUCACAGCUGGCUcGAGUGAG...................... len:22 al:19
........................................................UAUCACAGCUGGCUUGAGcGAGC..................... len:23 al:3872
........................................................UAUCACcGCUGGCUUGAGU......................... len:19 al:1
........................................................UAUCACAaCUGGCUUGAGUGAGC..................... len:23 al:1461
........................................................UAUCACAGCUGGCUgGAGUG........................ len:20 al:33
........................................................UAUCACuGCUGGCUUGAGUG........................ len:20 al:29
........................................................UAUCACAGgUGGCUUGAGUG........................ len:20 al:1
........................................................UAUCAaAGCUGGCUUGAGUGAGC..................... len:23 al:292
........................................................UAUCgCAGCUGGCUUGAGUG........................ len:20 al:172
........................................................UAUCACgGCUGGCUUGAG.......................... len:18 al:4
........................................................UAUCACAGCUGaCUUGAGUGAG...................... len:22 al:8
........................................................UAUCACAGCUGGCUUGAGUGu....................... len:21 al:40
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAAU................ len:28 al:10
........................................................UAUCACAGCcGGCUUGAGUGAGCA.................... len:24 al:76
........................................................UAUCACAGCUGGCUUGAGcG........................ len:20 al:163
........................................................UAUCACAGCUGGuUUGAGUG........................ len:20 al:54
........................................................UAUCgCAGCUGGCUUGAGUGAGCA.................... len:24 al:67
........................................................UAUCACAGCUGaCUUGAGUGAGCA.................... len:24 al:13
........................................................UAUCACAGCUGGCUUGAGUGAGCuG................... len:25 al:9
........................................................UAcCACAGCUGGCUUGAGUGAG...................... len:22 al:11
........................................................UAUCACAGCUGGCUUGAGUGAGCAaAAU................ len:28 al:150
........................................................UAUCACAGCUGGCUUGAGUGgGCAG................... len:25 al:2
........................................................UAUCACAGCUGGCUUGAGUGcGCA.................... len:24 al:11
........................................................UAUCACAGCUGGCcUG............................ len:16 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAGA.................. len:26 al:106
........................................................aAUCACAGCUGGCUUGAGUGAGCAGA.................. len:26 al:1
........................................................UAUCACAGCUGGaUUGAGUG........................ len:20 al:4
........................................................UAUCACAGCUGGCUUGuGUGAGC..................... len:23 al:849
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAA................. len:27 al:9
........................................................UAUCgCAGCUGGCUUGAGUGAGC..................... len:23 al:7365
........................................................UAUCACcGCUGGCUUGAGUGA....................... len:21 al:2
........................................................UAUCACAGCUcGCUUGAGUGAGC..................... len:23 al:16
........................................................UAUCACAGCUGGCUUGAGUGAuCA.................... len:24 al:1
........................................................UAUCACAGCUGaCUUGAGUG........................ len:20 al:34
........................................................UAUCACAaCUGGCUUGAGUGA....................... len:21 al:2
........................................................UAUCACAGCUGGuUUGAGUGAG...................... len:22 al:4
........................................................UAUCACAGCUGGCUUa............................ len:16 al:9
........................................................UAUCACAGCUGGCUUGAGUGAGuA.................... len:24 al:59
........................................................UAUCACAGCcGGCUUGAGUG........................ len:20 al:128
........................................................UAUCACAcCUGGCUUGAGUGAGCA.................... len:24 al:1
........................................................UAcCACAGCUGGCUUGAGUGAGC..................... len:23 al:7071
........................................................UAUCACAGCUGGCaUGAGU......................... len:19 al:1
........................................................UAUCACAGCUGuCUUGAGUG........................ len:20 al:4
........................................................UAUCACAGCUGGCUUGAGUGAGC..................... len:23 al:1917648
........................................................UAUCACAGCUGGuUUGAGUGAGC..................... len:23 al:2347
........................................................UAUCACAGCUGuCUUGAGUGAGCA.................... len:24 al:2
........................................................UcUCACAGCUGGCUUGAG.......................... len:18 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCu.................... len:24 al:4528
........................................................UcUCACAGCUGGCUUGAGU......................... len:19 al:2
........................................................cAUCACAGCUGGCUUGAGUGA....................... len:21 al:10
........................................................UAUCACAGCUGGCUUGuGUGAGCA.................... len:24 al:12
........................................................UAUCACAGgUGGCUUGAGUGAGC..................... len:23 al:56
........................................................UAUCACAGCgGGCUUGAGUGA....................... len:21 al:1
........................................................UAUCACAGuUGGCUUGAGUGAGCA.................... len:24 al:26
........................................................UAUCACAGuUGGCUUGAGUG........................ len:20 al:52
........................................................UAUCACAGCUuGCUUGAGUGAGC..................... len:23 al:186
........................................................UAUCACAGCUGGCUUGAGUGAGCA.................... len:24 al:22901
........................................................UAUCACAGCUGGCUUGAGgGAG...................... len:22 al:7
........................................................UAUCACAGCUGGCUUGAGg......................... len:19 al:6
........................................................UAUCACAGCaGGCUUGAGUGA....................... len:21 al:1
........................................................UAUCACAGCUGGCUUGAGUGgG...................... len:22 al:45
........................................................UAUCACAGCUGGCcUGAGUGAG...................... len:22 al:21
........................................................UAUCACgGCUGGCUUGAGUG........................ len:20 al:183
........................................................UAUuACAGCUGGCUUGAGUGA....................... len:21 al:1
........................................................UcUCACAGCUGGCUUGAGUGAGC..................... len:23 al:586
........................................................UAUCACAGCUGGCUUaAGUG........................ len:20 al:17
........................................................UAUCACAGCUGGCUUGAGgGAGC..................... len:23 al:1080
........................................................UAUCACAGCUGGCUUGAuUGAGC..................... len:23 al:89
........................................................UAUCuCAGCUGGCUUGAGUGAG...................... len:22 al:5
........................................................UAUCACAGCUGGCUUGAGUGAGCAu................... len:25 al:6462
........................................................UAUCACAGCUGGCUUGAGaGAGCA.................... len:24 al:4
........................................................UAUCACAGCUaGCUUGAGUGAGC..................... len:23 al:1661
........................................................UAUCACAGCUGGCcUGAGUG........................ len:20 al:137
........................................................UAUCACAGCUGGCUUGAGUGAGCuGAA................. len:27 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAAa................ len:28 al:4
........................................................UAUCACAGCUGGCUUGAGUGAu...................... len:22 al:34
........................................................UAUCACAGCUGGCUUGAGU......................... len:19 al:999
........................................................cAUCACAGCUGGCUUGAGUGAGCAGA.................. len:26 al:1
........................................................aAUCACAGCUGGCUUGAGUGAGCA.................... len:24 al:16
........................................................UAUCACAGCUcGCUUGAGUGA....................... len:21 al:1
........................................................UgUCACAGCUGGCUUGAGUGAG...................... len:22 al:15
........................................................UAUCACAGCUGGCUUGAaUGAGCA.................... len:24 al:11
........................................................UAUaACAGCUGGCUUGAGUG........................ len:20 al:3
........................................................UAUCACAGCUGGCUUGAGUGuGCA.................... len:24 al:21
........................................................UAUCACAGCUGGCUUGAGUGAG...................... len:22 al:5604
........................................................UAUCACAGCUGGCUUGAGUGAGCAGc.................. len:26 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGuAG................... len:25 al:1
........................................................cAUCACAGCUGGCUUGAGUGAGCA.................... len:24 al:77
........................................................UgUCACAGCUGGCUUGAGUG........................ len:20 al:109
........................................................UAUCACAGCUGGCUUGAGUG........................ len:20 al:47312
........................................................UAUCACAGCUGGCUUGAGUGuG...................... len:22 al:7
........................................................UAcCACAGCUGGCUUGAGU......................... len:19 al:2
........................................................cAUCACAGCUGGCUUGAG.......................... len:18 al:1
........................................................UAgCACAGCUGGCUUGAGUGAGCA.................... len:24 al:2
........................................................UAUCACAGCUGGCUUGgGUG........................ len:20 al:184
........................................................UAUCACAGCUGGCUUGAcUG........................ len:20 al:3
........................................................UAUCACcGCUGGCUUGAGUG........................ len:20 al:24
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAuU................ len:28 al:1
........................................................UAUCACAGCUGGCUUGAaUGAGC..................... len:23 al:969
........................................................UAUCAaAGCUGGCUUGAGUG........................ len:20 al:6
........................................................UAUCACuGCUGGCUUGAGUGA....................... len:21 al:1
........................................................UAcCACAGCUGGCUUG............................ len:16 al:1
........................................................UAUuACAGCUGGCUUGAGUG........................ len:20 al:30
........................................................UAUCACAcCUGGCUUGAGUGAGC..................... len:23 al:134
........................................................UAUCACAGCUGGCUUaAG.......................... len:18 al:1
........................................................UAUCACAGuUGGCUUGAGUGAG...................... len:22 al:9
........................................................UAUgACAGCUGGCUUGAGUGAGCAGA.................. len:26 al:1
........................................................UAUCACAcCUGGCUUGAG.......................... len:18 al:1
........................................................UAUCACAGCUGGCUUcAGUGAGC..................... len:23 al:22
........................................................UAUCACAGCUGGuUUGAG.......................... len:18 al:1
........................................................UAUCACAGCUGuCUUGAGUGAG...................... len:22 al:1
........................................................UAUCACAGCUGGCUUGAGUGgGC..................... len:23 al:13905
........................................................UAUCACAGCUGGCUUGAGUu........................ len:20 al:683
........................................................UAUCACAGuUGGCUUGAGUGAGC..................... len:23 al:1959
........................................................UAUCACAGCUGGCUUGAGUGAa...................... len:22 al:554
........................................................UAUCACAGCUGGCUUGcGUGA....................... len:21 al:1
........................................................UAUCACAGCUGGCUUGcGUGAGCA.................... len:24 al:6
........................................................UAUCACAGCUGGCUaGAGUG........................ len:20 al:12
........................................................UuUCACAGCUGGCUUGAGUG........................ len:20 al:14
........................................................UAUCACAGCUGGCUUGAaU......................... len:19 al:10
........................................................UAUCACuGCUGGCUUGAGUGAGC..................... len:23 al:1413
........................................................UAUCACAGaUGGCUUGAGUGAG...................... len:22 al:1
........................................................UAUCACAGCgGGCUUGAGUG........................ len:20 al:22
........................................................UAUCuCAGCUGGCUUGAGUG........................ len:20 al:16
........................................................UAUCgCAGCUGGCUUGAGUGAGCAGA.................. len:26 al:1
........................................................UAUCcCAGCUGGCUUGAGUGAGCA.................... len:24 al:13
........................................................UAUCACAGCUGGCUUGAu.......................... len:18 al:2
........................................................UAUCACgGCUGGCUUGAGUGAGCAGA.................. len:26 al:1
........................................................UAUCACAGCUGGCUUGAGUGAGCAGu.................. len:26 al:8
........................................................UAUCcCAGCUGGCUUGAGUGAGC..................... len:23 al:984
........................................................UAUCACAGCUGGCUUGAGUGAGCc.................... len:24 al:649
........................................................UAUCACAGCUGGCUUGAG.......................... len:18 al:278
........................................................UAUCACAGCUGGCUUGAGUGAGCAuAAU................ len:28 al:6
........................................................UAUCACAGCUGGCUUGcGU......................... len:19 al:1
........................................................UAUCACAaCUGGCUUGAGUGAG...................... len:22 al:4
........................................................UAUCACAGCUGGCUUGgGUGA....................... len:21 al:8
........................................................UAUgACAGCUGGCUUGAGUG........................ len:20 al:10
........................................................UAUaACAGCUGGCUUGAGUGAGCA.................... len:24 al:1
........................................................cAUCACAGCUGGCUUGAGU......................... len:19 al:8
........................................................UAUCACgGCUGGCUUGAGU......................... len:19 al:6
........................................................UAUCACAGCUGGCUUGAGUGAGaAG................... len:25 al:4
........................................................UAUCACAGCUGGCUUGAGUGAcCA.................... len:24 al:4
........................................................UAcCACAGCUGGCUUGAGUGAGCAG................... len:25 al:2
........................................................UAUCACAGCUGGCUUGAGUGAGCAG................... len:25 al:113
........................................................UgUCACAGCUGGCUUGAGUGAGC..................... len:23 al:4342
........................................................UAUCACAGCUGuCUUGAGUGAGC..................... len:23 al:246
........................................................UAUCACAGCUGGCUUGAGUGAaCA.................... len:24 al:17
........................................................UAUCACAGCUGGCUUGAGUGgGCAGA.................. len:26 al:2
........................................................gAUCACAGCUGGCUUGAGUG........................ len:20 al:5
........................................................UAUCACAGCaGGCUUGAGUG........................ len:20 al:26
........................................................UAcCACAGCUGGCUUGAGUG........................ len:20 al:184
........................................................UAUCACAGaUGGCUUGAGUGAGCA.................... len:24 al:1
........................................................UAUCuCAGCUGGCUUGAGUGA....................... len:21 al:1
........................................................UAUCACAGCUGGCaUGAGUG........................ len:20 al:9
........................................................UAUCACAGCUGGCUUGAGUa........................ len:20 al:5611
........................................................UAUCACAGCUaGCUUGAGUGAG...................... len:22 al:8
........................................................UAUCACAGCUGGCUUGAaUG........................ len:20 al:20
........................................................UAUCACAaCUGGCUUGAGUGAGCA.................... len:24 al:15
........................................................UAUCACuGCUGGCUUGAGUGAG...................... len:22 al:5
........................................................UAUCACAGCUGGCUUGAGUGAGCAa................... len:25 al:1838
........................................................UAUaACAGCUGGCUUGAGUGAGC..................... len:23 al:67
........................................................UAaCACAGCUGGCUUGAGUGA....................... len:21 al:2
........................................................UAUCACAuCUGGCUUGAGUG........................ len:20 al:1
........................................................UuUCACAGCUGGCUUGAGUGAGC..................... len:23 al:506
........................................................UAUCgCAGCUGGCUUGAGUGAG...................... len:22 al:22
........................................................UAUCgCAGCUGGCUUGAGUGA....................... len:21 al:6
........................................................UAUCACAGCUGGCUUGAGUGAGCAuA.................. len:26 al:75
........................................................UAUCACAGCUGGuUUGAGU......................... len:19 al:2
........................................................UAUCACAGCUGGCUUGAGUGAc...................... len:22 al:18
........................................................UAUCACcGCUGGCUUGAGUGAGCA.................... len:24 al:10
........................................................UAUuACAGCUGGCUUGAGUGAGC..................... len:23 al:1095
........................................................UAUCACAGCUGGCUUGAGgG........................ len:20 al:47
........................................................UAUCACAGCUGGCUUGcGUG........................ len:20 al:5
........................................................UAaCACAGCUGGCUUGAGUG........................ len:20 al:29
........................................................UAUCACAGCcGGCUUG............................ len:16 al:1
........................................................UAUCACAGCUGGgUUGAGUG........................ len:20 al:7
........................................................UAUCcCAGCUGGCUUGAGU......................... len:19 al:1
........................................................UAUCACAGCUGGCgUGAGUGAGC..................... len:23 al:1574
........................................................UAUCACgGCUGGCUUGAGUGA....................... len:21 al:5
........................................................UAUCACAGCUGGCUUGAGUGAuC..................... len:23 al:511
........................................................UAUCACAGCaGGCUUGAGUGAGC..................... len:23 al:1135
........................................................UAUCACuGCUGGCUUGAGUGAGCAG................... len:25 al:1
........................................................UAUCACAGCUGGCgUGAGUGAG...................... len:22 al:4
........................................................UAUCACAGCUGGCUcGAGUGA....................... len:21 al:2
........................................................UAaCACAGCUGGCUUGAGU......................... len:19 al:3
........................................................UAUCACAGCUGGCUUGAGUGAGu..................... len:23 al:421085
........................................................UAUCACAGCUGGCUUGuGUG........................ len:20 al:17
........................................................UAUCACAGCUGGCUUGAGUGAGCAGAAc................ len:28 al:2
........................................................UAgCACAGCUGGCUUGAGUGAGC..................... len:23 al:229
........................................................UAUCACAGCUGGCUUGuGUGAG...................... len:22 al:3
........................................................UAUCACAGCUGGCUUGAGUGAGCAaA.................. len:26 al:1293
........................................................UAUCACAGCUGGCUUGAGcGAGCA.................... len:24 al:48
........................................................UAUCACAGCUGGCUgGAGUGAGCA.................... len:24 al:23
........................................................UAUCACAGCUGGCUaGAGUGAGCA.................... len:24 al:11
........................................................UAUCACAGCUGGCUUG............................ len:16 al:139
........................................................UAUCACAGCUGGCUUGAGUGuGC..................... len:23 al:1453
........................................................UAUCACAGCUGGCUUGAGgGAGCA.................... len:24 al:10
........................................................aAUCACAGCUGGCUUGAGUG........................ len:20 al:32
........................................................UcUCACAGCUGGCUUGAGUGAGCA.................... len:24 al:7
........................................................UAUuACAGCUGGCUUGAGUGAG...................... len:22 al:5
........................................................UAUCACAcCUGGCUUGAGUG........................ len:20 al:3
........................................................UAUCACAGCUGGCUUGAGUGg....................... len:21 al:28
........................................................UAUCACAGCUGGCUUGAGUGAGa..................... len:23 al:65299
........................................................UAUCACAGCUGuCUUGAGUGA....................... len:21 al:2
........................................................UAUCACAGCUGGCUcGAGUGAGC..................... len:23 al:5166
........................................................UAUCACAGCUGGCcUGAGUGAGCA.................... len:24 al:60
........................................................UAUCcCAGCUGGCUUGAGUGAG...................... len:22 al:1
........................................................UAUCACAGCUGGCcUGAGUGA....................... len:21 al:6
........................................................UAUCACAGCUGGCcUGAGUGAGC..................... len:23 al:5535
........................................................UAUCACAGCgGGCUUGAGUGAGC..................... len:23 al:743
.........................................................AUCACAGCUGGuUUGAGUGAGC..................... len:22 al:2
.........................................................AUCACAGCUGGCUUGAGUGAGCAu................... len:24 al:1
.........................................................AUCACAGCUGGCUUGAGUGAGa..................... len:22 al:7
.........................................................AUCACAGCUGGCUUGAGUGAGC..................... len:22 al:147
.........................................................AUCACAGCUGGCUUGAGUGgGC..................... len:22 al:1
.........................................................AUCACAGCUGGCcUGAGUGAGC..................... len:22 al:1
.........................................................AUCACAGCUGGCUaGAGUGAGC..................... len:22 al:1
.........................................................AUCACAGCUGGCUUGAGUGAGCu.................... len:23 al:1
.........................................................AUCACuGCUGGCUUGAGUGAGC..................... len:22 al:2
.........................................................AUCACAGCUGGCUUGAGUG........................ len:19 al:4
.........................................................AaCACAGCUGGCUUGAGUGAGC..................... len:22 al:2
.........................................................AUCACAGCUGGCUUGAGUGAGCAc................... len:24 al:1
.........................................................AUCACAGCUGGCUUGAGUGAGu..................... len:22 al:40
..........................................................UaACAGCUGGCUUGAGUGAGC..................... len:21 al:2
..........................................................UCACAGCUGGCUUGAGUGAGC..................... len:21 al:5
..........................................................UCACAGCUGGCUUGAGUGAGu..................... len:21 al:2
..........................................................UCACAGCUGGCUUGAGUGAGCA.................... len:22 al:1
...........................................................CACAGCUGGCUUGAGUGAGu..................... len:20 al:3
...........................................................uACAGCUGGCUUGAGUGAGC..................... len:20 al:1
...........................................................CACAGCUGGCUUGAGUGAGC..................... len:20 al:12
............................................................ACAGCUGaCUUGAGUGAGC..................... len:19 al:2
............................................................ACAGCUGGCUUGAGUGAGCAaAA................. len:23 al:1
............................................................ACgGCUGGCUUGAGUGAGC..................... len:19 al:13
............................................................ACAGCcGGCUUGAGUGAGC..................... len:19 al:17
............................................................ACAGCUGGCUUGAaUGAGC..................... len:19 al:3
............................................................ACAGCUGGCUUGAGUaAGC..................... len:19 al:1
............................................................ACAGCUGGCUUGAGUGAGCAc................... len:21 al:1
............................................................ACAGCUGGCUUGAuUGAGC..................... len:19 al:1
............................................................ACAGCUGGCaUGAGUGAGC..................... len:19 al:1
............................................................cCAGCUGGCUUGAGUGAGC..................... len:19 al:2
............................................................ACAGCUGGCUUGgGUGAGC..................... len:19 al:17
............................................................ACAGCUGGCUUaAGUGAGC..................... len:19 al:1
............................................................ACAGCUGGCUUGAGUGgGC..................... len:19 al:26
............................................................ACAGCUGGCUUGAGUGAGCAGAAg................ len:24 al:1
............................................................ACAGCUGGCUUGAGUGAGCA.................... len:20 al:33
............................................................ACAGCUGGCUUGuGUGAGC..................... len:19 al:4
............................................................ACAGuUGGCUUGAGUGAGC..................... len:19 al:3
............................................................ACAGCUGGCUcGAGUGAGC..................... len:19 al:10
............................................................ACAGCUGGCUUGAGUGAa...................... len:18 al:3
............................................................ACAaCUGGCUUGAGUGAGC..................... len:19 al:3
............................................................ACAGCUGGCUUGAGUGA....................... len:17 al:1
............................................................ACAGCUuGCUUGAGUGAGC..................... len:19 al:1
............................................................ACAGCUGGCUUGAGUGAGC..................... len:19 al:4329
............................................................ACAGCUGGCUUGcGUGAGC..................... len:19 al:3
............................................................ACAGCUGGCUUGAGUGAuC..................... len:19 al:1
............................................................ACAGCUGGCUUGAGUG........................ len:16 al:6
............................................................ACcGCUGGCUUGAGUGAGC..................... len:19 al:4
............................................................ACAGCUGGCUUGAGUGcGC..................... len:19 al:2
............................................................ACAGCUGGCUUGAGUGAGCAa................... len:21 al:4
............................................................ACAGCUGGCUUGAGUGAGCAu................... len:21 al:9
............................................................ACAGCUGGCUgGAGUGAGC..................... len:19 al:2
............................................................ACAGCUGGCUUGAGUGAGCu.................... len:20 al:7
............................................................ACAGCUGGCUaGAGUGAGC..................... len:19 al:2
............................................................ACAGCUGGCcUGAGUGAGC..................... len:19 al:9
............................................................ACAGCUGGCUUGAGU......................... len:15 al:1
............................................................ACAGaUGGCUUGAGUGAGC..................... len:19 al:1
............................................................AuAGCUGGCUUGAGUGAGC..................... len:19 al:7
............................................................ACAGCUGGuUUGAGUGAGC..................... len:19 al:6
............................................................ACuGCUGGCUUGAGUGAGC..................... len:19 al:7
............................................................ACAGCUGGCUUGAGUGAG...................... len:18 al:2
............................................................ACAGCUaGCUUGAGUGAGC..................... len:19 al:2
............................................................ACAGCaGGCUUGAGUGAGC..................... len:19 al:4
............................................................ACAGCUGGCUUGAGUGAGCAGA.................. len:22 al:1
............................................................uCAGCUGGCUUGAGUGAGC..................... len:19 al:1
............................................................ACAGCUGGCUUGAGUGuGC..................... len:19 al:2
............................................................AgAGCUGGCUUGAGUGAGC..................... len:19 al:1
............................................................ACAGCUGGCUUGAGcGAGC..................... len:19 al:11
............................................................ACAGCUGGCUUGAGUGAGu..................... len:19 al:915
............................................................ACAGCUGGCUUGAGUGAGa..................... len:19 al:149
............................................................ACAGCUGGCUUGAGUGAGCAaA.................. len:22 al:1
............................................................gCAGCUGGCUUGAGUGAGC..................... len:19 al:19
............................................................ACAGgUGGCUUGAGUGAGC..................... len:19 al:2
............................................................ACAGCUGGCUUGAGUGAGg..................... len:19 al:8
............................................................ACAGCUGGCgUGAGUGAGC..................... len:19 al:1
............................................................ACAGCUGGCUUGAGUGAaC..................... len:19 al:7
............................................................ACAGCUGcCUUGAGUGAGC..................... len:19 al:1
.............................................................CAGCUGGCUUGAGUGAGC..................... len:18 al:4
.............................................................CAGCUGGCUUGAGUGAGu..................... len:18 al:1