Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026861010.1:35908-36007 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_20177.ps.pdf
Locus Name: Cluster_20177
GAAAGCAGAGACUUUUUGUACGUGAUAGGUCUUGCAUUGCUGUUUAGUUUAUUUCACCAAUGCAUAAUCUACCACUGUAUAAAUUUCUCUUGACACAACU
......(((((...((((((((((.(((((..(((((((.((............)).)))))))..))))).))).)))))))..))))).......... (-27.40)
...................ACGUGAUAGGUCUUGCAUUGCU........................................................... len:22 al:1
....................CGUGAUAGGUCUUGCAUUGCUGUaU....................................................... len:25 al:1
....................CGUGAUAGGUCUUGCAUUGCUa.......................................................... len:22 al:43
....................uGUGAUAGGUCUUGCAUUGCU........................................................... len:21 al:1
....................CGUGAUAGGUCUUGCAUUGCUGaU........................................................ len:24 al:1
....................CGUGAUAGGcCUUGCAUUGCUG.......................................................... len:22 al:2
....................CGUGAUAGGUCUcGCAUUGCU........................................................... len:21 al:1
....................CGUGAUAGGUCUUGCAUUGCUGg......................................................... len:23 al:2
....................CGUGgUAGGUCUUGCAUUGCUG.......................................................... len:22 al:1
....................CGUGAUAGGUCUUGCAUUGaUG.......................................................... len:22 al:1
....................CGUGAUAGGUCUUGCAUUGCa........................................................... len:21 al:8
....................CGUGAUAGGUCUUGCAUUGC............................................................ len:20 al:12
....................CGUGAUAGGUCUUGCAUUGCUGUa........................................................ len:24 al:2
....................CGUGAUAGGUCcUGCAUUGC............................................................ len:20 al:1
....................CGUGAUAGGUCUUGCAUUGCUGa......................................................... len:23 al:34
....................CGUGAUAGGUCUUGCAUcGCUG.......................................................... len:22 al:1
....................CGUGAUAGGUCUUGCAUUGCUGU......................................................... len:23 al:4
....................CGUGAUAGGUCUUGCAUUGCg........................................................... len:21 al:6
....................CGUGAUAGGUCUUGCAUUGCU........................................................... len:21 al:160
....................CGUGAUAGGUCUUGCAUUGCc........................................................... len:21 al:22
....................CGUGAUAGGUCUUGCAUUGCcG.......................................................... len:22 al:5
....................CGcGAUAGGUCUUGCAUUGCUG.......................................................... len:22 al:2
....................CGUGAUAGGUCUUGCAUUGu............................................................ len:20 al:2
....................CGUGcUAGGUCUUGCAUUGCU........................................................... len:21 al:2
....................CGUGgUAGGUCUUGCAUUGC............................................................ len:20 al:1
....................CGUGAUgGGUCUUGCAUUGCUG.......................................................... len:22 al:1
....................CGUGAUAGGUCUUGCAUUGCUG.......................................................... len:22 al:274
....................CGUGAUAGGUCUcGCAUUGCUG.......................................................... len:22 al:1
....................CGUGAUAGGUCUUaCAUUGCU........................................................... len:21 al:1
....................CGUGAUAGGUCUUGCAaUGCU........................................................... len:21 al:1
....................CGUGAUAGGcCUUGCAUUGCU........................................................... len:21 al:2
....................CGUGAUAGGUCUUGCAUUGCUc.......................................................... len:22 al:2
....................CGUGAUAGGUCUUGCAUUGCUu.......................................................... len:22 al:7
....................CGUGAUAGGUCUUGCcUUGCU........................................................... len:21 al:1
....................CGUGAUAGGUCcUGCAUUGCUG.......................................................... len:22 al:1
.....................GUGAUAGGUCUUGCAUUGCUG.......................................................... len:21 al:1
........................................................CCAAUGCAUAAUCUACCAuUGU...................... len:22 al:4
........................................................CCAAUGCAUgAUCUACCACUGU...................... len:22 al:1
........................................................CCAAUcCAUAAUCUACCACUGU...................... len:22 al:1
........................................................CCAAUGCAUAAUCUACCAaUGU...................... len:22 al:1
........................................................CCAAUGCAgAAUCUACCACUGUA..................... len:23 al:1
........................................................CaAAUGCAUAAUCUACCACUGU...................... len:22 al:1
........................................................CCAAgGCAUAAUCUACCACUGU...................... len:22 al:1
........................................................CCgAUGCAUAAUCUACCACUGU...................... len:22 al:4
........................................................CCAAaGCAUAAUCUACCACUGU...................... len:22 al:1
........................................................CCAAcGCAUAAUCUACCACUGUA..................... len:23 al:1
........................................................CCAAUGCAUAAUCUACCACUGU...................... len:22 al:797
........................................................CCAgUGCAUAAUCUACCACUGU...................... len:22 al:1
........................................................CCAAUGCAUAAUuUACCACUGU...................... len:22 al:1
........................................................CCAcUGCAUAAUCUACCACUGU...................... len:22 al:2
........................................................CCAAUGCAUAAUCUACCACUGg...................... len:22 al:18
........................................................CCAAUGCAUAAUCUACCACUG....................... len:21 al:3
........................................................CCAAUGCAUAAUCUACCACUGUAg.................... len:24 al:7
........................................................CCAAUGCAUAgUCUACCACUGU...................... len:22 al:1
........................................................CCAAUGCgUAAUCUACCACUGU...................... len:22 al:6
........................................................CCAAUGCAUAAUCUACCACUGc...................... len:22 al:99
........................................................uCAAUGCAUAAUCUACCACUGU...................... len:22 al:2
........................................................CCAAUGCAUAAUCUACCACUaU...................... len:22 al:1
........................................................CCAAUGCAUAAUCUACCACgGU...................... len:22 al:1
........................................................CCAAUGCAUAAUCUACCACUGa...................... len:22 al:8
........................................................CCAAUGCAUAAUCUACCACUGUA..................... len:23 al:52
........................................................CCAAUaCAUAAUCUACCACUGU...................... len:22 al:1
........................................................CCAAUGCAUAAUCUACCgCUGU...................... len:22 al:2
........................................................CCAAUGCAUAAUCUACCACUGcAU.................... len:24 al:1
........................................................CCAAUGCAUAAUCUACCACUGUAaA................... len:25 al:4
........................................................CCAAUGCAUAAUCUACCACUa....................... len:21 al:1
........................................................CCAAUGCAUAAUCUACCACUGUAU.................... len:24 al:15
........................................................CCAAUGCAUAAcCUACCACUGU...................... len:22 al:2
........................................................CCAAUGCAUAAUCUgCCACUGU...................... len:22 al:2
........................................................CCAAUGCAUAAUCcACCACUGU...................... len:22 al:3
........................................................CCAAUGCAUAAUCUACCACUGUAa.................... len:24 al:39
........................................................CCAAUGCAUAAUCUACCACcGU...................... len:22 al:1
........................................................CCAAcGCAUAAUCUACCACUGU...................... len:22 al:1
.........................................................CAAUGCAUAAUCUACCACUGU...................... len:21 al:5
..........................................................AAUGCAUAAUCUACCACUGU...................... len:20 al:1