Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026860628.1:160277-160376 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_19246.ps.pdf
Locus Name: Cluster_19246
UCUAGACUGUAGUUAUUUUACCGGGUUUGACGAUUUGCGAGCAUUGGAAUUAUUUUGUUCGUUGUCGUCGAAACCUGCCUUAAAUACUGCAAUUUUACGU
.......((((((.((((...(((((((((((((..(((((((............))))))).)))))).)))))))....))))))))))......... (-31.90)
....................CCGGGUUUGACGAUUUGCGAGCA......................................................... len:23 al:3
....................CCGGGUUUGACGAUUUGCGAGC.......................................................... len:22 al:1
.........................................................UUCGUUGUCuUCGAAACCUGC...................... len:21 al:5
.........................................................UUCGUUGUCuUCGAAACCUGCC..................... len:22 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCCUUAAg................ len:27 al:1
.........................................................UUCGUUaUCGUCGAAACCUGCCU.................... len:23 al:1
.........................................................UUCGUUGUCGcCGAAACCUGCCUU................... len:24 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCCg.................... len:23 al:2
.........................................................UUCGUUGUCGUCGAAACCUGCCUUc.................. len:25 al:10
.........................................................UUCGUUGUCGUCGAAACCUGCCa.................... len:23 al:19
.........................................................UUCGUUGUCGUCGAAACCUGCCcU................... len:24 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCu..................... len:22 al:9
.........................................................cUCGUUGUCGUCGAAACCUGCCUU................... len:24 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCa..................... len:22 al:3
.........................................................cUCGUUGUCGUCGAAACCUGCCU.................... len:23 al:2
.........................................................UUCGUUGUCGUCGAAACCUGCCUa................... len:24 al:13
.........................................................UUCGUUGUCGUCGAAACCUGCCUUA.................. len:25 al:24
.........................................................UUCGUUGUCGUCGAAACCUGCCUU................... len:24 al:144
.........................................................UUCGUUGUCGUCGAAACCUGCCc.................... len:23 al:31
.........................................................UUCGUUGUCGUCGAAACCUGC...................... len:21 al:5
.........................................................UUCGUUGUCGUCGcAACCUGCCU.................... len:23 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCC..................... len:22 al:18
.........................................................UUCGUUGUCGUCGAAACCUGCCUaAA................. len:26 al:2
.........................................................UUCGUUGUCGUCGAAACCUGCCUUg.................. len:25 al:1
.........................................................UUCGUUGUCGUCGAAgCCUGCCUU................... len:24 al:3
.........................................................UUCGUUGUCGUCGAAACCUGCCUUAA................. len:26 al:9
.........................................................UUCGUUGUCGUCGAAACCUGCCUUAAu................ len:27 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCuU.................... len:23 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCCUUu.................. len:25 al:54
.........................................................UUCGUUGUCGUCGAAACCUGCCUUAg................. len:26 al:2
.........................................................UUCGUUGUCGUCGAAACCUG....................... len:20 al:1
.........................................................UUCGUUGUCGUCGAAACCUGu...................... len:21 al:7
.........................................................UUCGUUGUCGUCGAAACCUGCCgU................... len:24 al:2
.........................................................UcCGUUGUCGUCGAAACCUGCCU.................... len:23 al:1
.........................................................UUCGUUGUCGUCGAgACCUGCCU.................... len:23 al:1
.........................................................UUCGUUGUCGUCGAAACuUGCC..................... len:22 al:1
.........................................................UUCGUUGUCGcCGAAACCUGCCU.................... len:23 al:1
.........................................................UUCGUUGUCGUCGAAgCCUGCCU.................... len:23 al:1
.........................................................UUCGUUGUCGUCGgAACCUGCCUU................... len:24 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCuUU................... len:24 al:1
.........................................................UUCGUcGUCGUCGAAACCUGCCUU................... len:24 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCCUUAAA................ len:27 al:3
.........................................................UUCGUUGUCGUCGAAACCUaC...................... len:21 al:1
.........................................................UUCGUUGUCGUCGgAACCUGCCU.................... len:23 al:2
.........................................................UUCGUUGUCGUCGAAACCUGCCUaA.................. len:25 al:6
.........................................................UUCGUUGcCGUCGAAACCUGCCUU................... len:24 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCg..................... len:22 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCCU.................... len:23 al:162
.........................................................UUCGUUGUCGUCGAAACCUGCCUUAAc................ len:27 al:1
.........................................................UUCGUUGUCGUCGAAACCUGCCUc................... len:24 al:13