Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026852415.1:231396-231495 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_1785.ps.pdf
Locus Name: Cluster_1785
UGGUUUCUAUGGCGAUGUUUUAUGGCAGUGUGGUUAGCUGGUUGUCAAGGGAGCUGUACAACCACUUUCUGCACUCCAGAAAAACGUGUCAUUAUUUCGG
........(((((.(((((((.(((.(((((((..((.(((((((..((....))..)))))))))..))))))))))..))))))))))))........ (-35.00)
......................UGGCAGUGUGGUUAaCUGGUUGU....................................................... len:23 al:3
......................UGGCAGUGUGGaUAGCUGGUUGU....................................................... len:23 al:1
......................UGGCAGUGUGGUUAGCUGGUc......................................................... len:21 al:5
......................UGGCAGUGUGGUUAGuUGGUUGU....................................................... len:23 al:8
......................UGGCAGUGUGGUUAGCUGGUU......................................................... len:21 al:68
......................UGGCAGUGUGGUUAGCUGGUUGg....................................................... len:23 al:51
......................UGGCAGcGUGGUUAGCUGGUUGU....................................................... len:23 al:15
......................UGGCAaUGUGGUUAGCUGGUUGU....................................................... len:23 al:4
......................UGGCAGUGUGGUUAGCUGGUUaU....................................................... len:23 al:7
......................UGGCAGUGUGGUUAGCUGGUUc........................................................ len:22 al:2
......................UGGCAGUGUGGUUAGCUGGUUGUu...................................................... len:24 al:67
......................UuGCAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:2
......................cGGCAGUGUGGUUAGCUGGUU......................................................... len:21 al:1
......................UaGCAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:8
......................UGGCgGUGUGGUUAGCUGGUUGU....................................................... len:23 al:24
......................UGGCAGUGUGGUUAGCUGGUUGUaAA.................................................... len:26 al:16
......................UGGCAGUGUGGUUAuCUGGUUGU....................................................... len:23 al:1
......................UGGCAGUGUGGUUcGCUGGUUGU....................................................... len:23 al:4
......................UGGCAGUGUGGUUAGCUGGUUGUa...................................................... len:24 al:466
......................UGGCAGUGUGGUUAGCUGGUUGUg...................................................... len:24 al:14
......................UGGCAGUGUGGUUAGCUGuUUGU....................................................... len:23 al:2
......................UGGCAGUGUGGUUAGCUGGUUu........................................................ len:22 al:5
......................UGGCAGUGUGGUUAGCUGGUcGU....................................................... len:23 al:10
......................UGGCAGUGUGGUUAGCUGaUUGU....................................................... len:23 al:3
......................UGGCAGgGUGGUUAGCUGGUUGU....................................................... len:23 al:2
......................UGGCAGUGUGGcUAGCUGGUUGU....................................................... len:23 al:10
......................UGGCAGUGUGGUUAGCUGGUUGa....................................................... len:23 al:109
......................UGGCAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:5970
......................UGGCAGUGUGGUUAGCUGGUUGUaA..................................................... len:25 al:53
......................UGGCAGaGUGGUUAGCUGGUUGU....................................................... len:23 al:2
......................UGGCAGUGUaGUUAGCUGGUUGU....................................................... len:23 al:1
......................UGGCAGUGUGaUUAGCUGGUU......................................................... len:21 al:1
......................UGGCAGUGUuGUUAGCUGGUUGU....................................................... len:23 al:2
......................UGGCAGUaUGGUUAGCUGGUUGU....................................................... len:23 al:3
......................UGGCAGUGUGGUcAGCUGGUUGU....................................................... len:23 al:17
......................UGGCAGUGUGGUUAGCUaGUUGU....................................................... len:23 al:8
......................UGGCAGUGcGGUUAGCUGGUUGU....................................................... len:23 al:13
......................UGGCAGUGUGGUUAGCaGGUUGU....................................................... len:23 al:2
......................UGGCAGUGUGaUUAGCUGGUUGU....................................................... len:23 al:2
......................gGGCAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:2
......................UGaCAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:2
......................UGGCAGUGUGGUUAGCUGGUUG........................................................ len:22 al:32
......................UGGCAGUGUGGUUAGCUGGUUuU....................................................... len:23 al:4
......................UGGCAGUGUGGUUAGCUGGUUa........................................................ len:22 al:5
......................UGGCcGUGUGGUUAGCUGGUUGU....................................................... len:23 al:6
......................UGGCAGUGUGGUUAGCcGGUUGU....................................................... len:23 al:18
......................UGGCAGUGUGGUUAGCUGG........................................................... len:19 al:9
......................UGGCAGUGUGGUUAGCUGGgUGU....................................................... len:23 al:1
......................UGGCAGUGUGGgUAGCUGGUUGU....................................................... len:23 al:2
......................UGGCAGUGUGGUUgGCUGGUUGU....................................................... len:23 al:20
......................UGGCAGUGUGGUUAGCUGGU.......................................................... len:20 al:6
......................UGGCAGUGUGGUUAGaUGGUUGU....................................................... len:23 al:1
......................UGGCAGUGUGGUUAGCUGGcUGU....................................................... len:23 al:17
......................UGGCAGUGUGGUUAGCUGGUUGUC...................................................... len:24 al:10
......................UGGCAGUGUGGUUAGCUGGUUGc....................................................... len:23 al:812
......................UGGCAGUGUGGUUAGCUGGUgGU....................................................... len:23 al:7
......................UGGCuGUGUGGUUAGCUGGUUGU....................................................... len:23 al:5
......................UGGuAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:11
......................UGGCAGUGUGuUUAGCUGGUUGU....................................................... len:23 al:2
......................UGGCAGUGaGGUUAGCUGGUUGU....................................................... len:23 al:3
......................aGGCAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:7
......................UGGCAGUGUGGUUAGCUGGUa......................................................... len:21 al:1
......................cGGCAGUGUGGUUAGCUGGUUGU....................................................... len:23 al:29
.............................................CAAGGGAGCUGUACg........................................ len:15 al:1
..........................................................CAACCACUUUCUGCACUCCAGAA................... len:23 al:1
...........................................................uACCACUUUCUGCACUCCAGAA................... len:22 al:5
...........................................................AcCCACUUUCUGCACUCCAGAA................... len:22 al:3
...........................................................cACCACUUUCUGCACUCCAGAA................... len:22 al:11
...........................................................AACCACUUUCUGCACUCCAGgA................... len:22 al:24
...........................................................AACCACUUUaUGCACUCC....................... len:18 al:1
...........................................................AACCACUUUuUGCACUCCAGAA................... len:22 al:2
...........................................................AACCACUUaCUGCACUCCAGA.................... len:21 al:1
...........................................................AACCACcUUCUGCACUCCAGAA................... len:22 al:11
...........................................................AACCACUUUCUGCACUCCuGA.................... len:21 al:1
...........................................................AACCACUUUCUGCACUCCAGAAu.................. len:23 al:2
...........................................................AACCACUUUCUGCACUuC....................... len:18 al:1
...........................................................AACCACUUUCUGCACUCuAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCuCUCCAGAA................... len:22 al:1
...........................................................AACCACUUcCUGCACUCCAGAA................... len:22 al:8
...........................................................AACCACUUUCaGCACUCCAGAA................... len:22 al:5
...........................................................AACCgCUUUCUGCACUCCAGAA................... len:22 al:7
...........................................................AACuACUUUCUGCACUCCAGA.................... len:21 al:1
...........................................................AAgCACUUUCUGCACUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCACUCu....................... len:18 al:19
...........................................................AACCACUUUCcGCACUCCAGAA................... len:22 al:13
...........................................................AACCACUUUgUGCACUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCACUCCAGAc................... len:22 al:2
...........................................................AACCACUUUCUGCACUCCAGAA................... len:22 al:4535
...........................................................AACCgCUUUCUGCACUCCAGA.................... len:21 al:3
...........................................................gACCACUUUCUGCACUCCAGA.................... len:21 al:1
...........................................................gACCACUUUCUGCACUCCAGAA................... len:22 al:19
...........................................................AACCACUcUCUGCACUCCAGAA................... len:22 al:10
...........................................................AACCACUUgCUGCACUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCcCUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCACUCCcGAA................... len:22 al:3
...........................................................AACCACcUUCUGCACUCCAGA.................... len:21 al:4
...........................................................AACCACUUcCUGCACUCC....................... len:18 al:1
...........................................................AACCACUUUCUaCACUCCAGA.................... len:21 al:2
...........................................................AACCACaUUCUGCACUCCAGA.................... len:21 al:1
...........................................................AACCACUUUCUaCACUCC....................... len:18 al:1
...........................................................AACCcCUUUCUGCACUCCAGAA................... len:22 al:1
...........................................................AACCACUcUCUGCACUCCAGA.................... len:21 al:1
...........................................................AACCACUaUCUGCACUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCAuUCCAGAA................... len:22 al:3
...........................................................AACCACUUUCUGCACcCCAGAA................... len:22 al:15
...........................................................AACCACUUUCUGuACUCC....................... len:18 al:1
...........................................................AACCACUUUCUGCACUCCAaAA................... len:22 al:2
...........................................................AACuACUUUCUGCACUCC....................... len:18 al:1
...........................................................AACCACUUUCcGCACUCCAGA.................... len:21 al:3
...........................................................AACCACUUUCUGCACUCCAGAg................... len:22 al:21
...........................................................AACCACUUUCUGCACUCC....................... len:18 al:82
...........................................................AACCACUUUCUGCACUCCAG..................... len:20 al:14
...........................................................AACCACUUUCUGCACUCa....................... len:18 al:10
...........................................................AACCACUUUCUGCACUCCAGAAA.................. len:23 al:3
...........................................................AAuCACUUUCUGCACUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGaACUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCACUCCAGu.................... len:21 al:7
...........................................................AACCACUUUCUGCgCUCCAGA.................... len:21 al:3
...........................................................AACCACUUUCUGCgCUCC....................... len:18 al:1
...........................................................AACCACUUUCUGCACUCCuGAA................... len:22 al:1
...........................................................AACCACUUUCUGCACUCCgGAA................... len:22 al:16
...........................................................AACCAuUUUCUGCACUCCAGA.................... len:21 al:2
...........................................................AACCACUUUCUGCACUCCAGAu................... len:22 al:17
...........................................................AACCACUUUCUGCgCUCCAGAA................... len:22 al:19
...........................................................AACCACUUUCUGCACUuCAGAA................... len:22 al:2
...........................................................AgCCACUUUCUGCACUCCAGAA................... len:22 al:22
...........................................................AACCACUUUCUuCACUCCAGAA................... len:22 al:1
...........................................................AuCCACUUUCUGCACUCCAGAA................... len:22 al:3
...........................................................AACCACUUUCUGCACUCCgGA.................... len:21 al:2
...........................................................AACCACUUUCUaCACUCCAGAA................... len:22 al:156
...........................................................AACCACUUUCUGCACUCCAGc.................... len:21 al:1
...........................................................AgCCACUUUCUGCACUCCAGA.................... len:21 al:1
...........................................................AACCACUUUCUGCACUCCAGA.................... len:21 al:420
...........................................................AACCACUUUCUGCAgUCCAGAA................... len:22 al:3
...........................................................AACCACUUUCaGCACUCC....................... len:18 al:1
...........................................................AACCAuUUUCUGCACUCCAGAA................... len:22 al:1
...........................................................AACCAaUUUCUGCACUCCAGAA................... len:22 al:1
...........................................................AACCACUUUCUGCACUCCAGAAc.................. len:23 al:1
...........................................................AACuACUUUCUGCACUCCAGAA................... len:22 al:3
.............................................................CCACUUUCUGCACUCCAGAA................... len:20 al:1
...............................................................ACUUUCUGCACUCCAGAA................... len:18 al:1