Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026859924.1:190953-191067 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_17619.ps.pdf
Locus Name: Cluster_17619
GGAACGCUGGGUGGUUUACUUGUUCUACGAGCUGUAACUGUCAUUGCUUUUCAAUUUUUCACAAAGCAUACGGCAGUUAUUACUCGUAGGAUACUUUAAUAUGCCCAAAUGUCAU
.((....((((((..(((..(((((((((((..(((((((((..((((((............))))))...)))))))))..)))))))))))...)))..))))))....)).. (-38.40)
...................UUGUUCUACGAGCUGUAACUGUCAUU...................................................................... len:26 al:1
....................UGUUCUACGAGCUGUAACcGUCAUUGCUUU................................................................. len:30 al:1
....................UGUUCUACGAGCUGUAACaGUCA........................................................................ len:23 al:1
....................UGUUCUAaGAGCUGUAACUGU.......................................................................... len:21 al:1
....................UGUUCUACGAGCUGUAACUGUCAUU...................................................................... len:25 al:1
....................UGUUCUACGAGCUGUAACUGc.......................................................................... len:21 al:19
....................UGUUCUACGAGuUGUAACUGUC......................................................................... len:22 al:2
....................UGUUCUACGAGCUGUAACUGU.......................................................................... len:21 al:142
....................UGUUCUACGAGCUGUAACUGUCAaUGCUU.................................................................. len:29 al:1
....................UGUUCUACGAGCUGUAACUGUCAUUGCUUU................................................................. len:30 al:46
....................UGUUCUACGAGCUGUAACUGUCuUU...................................................................... len:25 al:2
....................UGUUCcACGAGCUGUAACUGUC......................................................................... len:22 al:1
....................UGUUCUACGAGCUGUAACUGUCAUUGCUUa................................................................. len:30 al:1
....................UGUUCUACGAGCUGUAACUGUC......................................................................... len:22 al:509
....................UGUUCUACGAGCUGUAACUGUCu........................................................................ len:23 al:2
....................UGUcCUACGAGCUGUAACUGUC......................................................................... len:22 al:2
....................UGUUCUACGAGCUGUAAuUGUC......................................................................... len:22 al:1
....................UGUUCUACGAGCUGUgACUGU.......................................................................... len:21 al:1
....................UGUUCUACGAGCUGUAACUGgC......................................................................... len:22 al:1
....................UGUUCUACGAGCUGUAACUGUCAUUGCUaU................................................................. len:30 al:1
....................UGcUCUACGAGCUGUAACUGU.......................................................................... len:21 al:1
....................UGUUCUACGAGCUGUAACUGUa......................................................................... len:22 al:10
....................UGUUCUACGAGCUGUAACUGa.......................................................................... len:21 al:1
....................UGUUCUACGAGCUGUAACUGUCAUUGCaUU................................................................. len:30 al:1
....................UGUUCUACGAGCcGUAACUGU.......................................................................... len:21 al:1
....................UGUUCUACGAGCUGUAACUGUCAUUGCUUc................................................................. len:30 al:7
....................UGUUCUACGAGCUGUAACUGUu......................................................................... len:22 al:48
....................UGUUCUcCGAGCUGUAACUGUC......................................................................... len:22 al:1
....................UGUUCUACGAGCUGUAACUGUCA........................................................................ len:23 al:6
....................UGUUCUACGAGCUGUAACUGcC......................................................................... len:22 al:3
....................UGUUCUAaGAGCUGUAACUGUC......................................................................... len:22 al:1
....................UGcUCUACGAGCUGUAACUGUC......................................................................... len:22 al:1
....................UGUUCUACGAGCcGUAACUGUC......................................................................... len:22 al:1
....................UGUUCUACGAGCUGUAAuUGU.......................................................................... len:21 al:1
.....................GUUCUACGAGCUGUAACUGUC......................................................................... len:21 al:1
......................UUCUACGAGCUGUAACUGUC......................................................................... len:20 al:1
.........................UACGAGCUGUAACUGUCAUUGC.................................................................... len:22 al:1
.........................UACGAGCUGUAACUGUCAUUGu.................................................................... len:22 al:1
.............................AGCUGUAACUGUCAUUGCUUU................................................................. len:21 al:1
..................................................................CAUACGGCAGUUAUUACUCGU............................ len:21 al:6
......................................................................CGGCAGUUAUUACUCGUA........................... len:18 al:1
.......................................................................GGCAGUUAUUACUCGUAGGAUAu..................... len:23 al:1
.........................................................................CAGUUAUUACUCGUAGGAUACU.................... len:22 al:9