Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026859351.1:97285-97385 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_16249.ps.pdf
Locus Name: Cluster_16249
GAAGAGAUGGCAUUGCUUGGUUGUGCAUUGUAGUUGCAUUGCAUGUAUGUUACUCUGUGCAAUGUUCCUGCAGUGCAAUAACUAGGUGUCCUUUAGCAGCA
((((.(((......(((((((((((((((((((..((((((((((((...)))...)))))))))..))))))))).)))))))))))))))))....... (-37.30)
......................GUGCAUUGUAGUUGCAUUGC........................................................... len:20 al:14
......................GUGCAUcGUAGUUGCAUUGCA.......................................................... len:21 al:1
......................GUGCAUUGUAGUUGCAUUGu........................................................... len:20 al:2
......................GUGCAUUGUAGUUGCAUUGa........................................................... len:20 al:2
......................GUGuAUUGUAGUUGCAUUGCA.......................................................... len:21 al:1
......................GUGCAUUGUAGUUGCAUUGCA.......................................................... len:21 al:8
...........................................UGUAUGUUACUCUGUGCAAUGUUCCUGCAG............................ len:30 al:1
...........................................................CAAUGUUCCUGCAGUGCAAUAAaU.................. len:24 al:2
...........................................................CAAUGUUCCUGCAGUGCAgUA..................... len:21 al:1
...........................................................CAAUGUUuCUGCAGUGCAAUA..................... len:21 al:1
...........................................................CAAUGUUCuUGCAGUGCAAUA..................... len:21 al:1
...........................................................CAAUGUUCCUGCAGUGCAAUAAg................... len:23 al:1
...........................................................CAAUGUUCCUGCAGUGCAAUAA.................... len:22 al:15
...........................................................CAAUGUUCCUGCAGUGCAAUAg.................... len:22 al:3
...........................................................CAAUGcUCCUGCAGUGCAAUA..................... len:21 al:1
...........................................................CAAUGUUCCUGCAGUGCA........................ len:18 al:1
...........................................................CAAUGUUCCUGCAGUGCAAUAAu................... len:23 al:2
...........................................................CAAUGUUCCUGCAGUGCAA....................... len:19 al:1
...........................................................CAAUGUUCCUGCAGUGCAAUu..................... len:21 al:1
...........................................................CAAUGUUCCUGCAGUGCAAc...................... len:20 al:2
...........................................................CAAUGUUCCUGCAGUGCAAUg..................... len:21 al:1
...........................................................CAAUGUUCCUGCAGUGCAAUA..................... len:21 al:24
...........................................................CAAUGUUCCUGCAGUGCAAUgA.................... len:22 al:8
...........................................................CAAUGUUCCUGCAGUGCAAUAAa................... len:23 al:5
...........................................................CAAUGUUCCUGCAGUGCAAU...................... len:20 al:19
...........................................................CAAUGUUCCUGCAGUGCAu....................... len:19 al:1
...........................................................CAAUGUUuCUGCAGUGCAAUAA.................... len:22 al:1
...........................................................CAAUGcUCCUGCAGUGCAAU...................... len:20 al:1
............................................................AAUGUUCCUGCAGUGCAAUAAaU.................. len:23 al:4
............................................................AAUGUUCCUGCAGUGCAAUAAu................... len:22 al:3