Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026859070.1:334000-334099 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_15638.ps.pdf
Locus Name: Cluster_15638
GAGAAAAAAAAGUCCUGCUACUGGCCAAGUGGUUGUUAUAUAUUGAUUUCCCUAUAUCACAGCCUGCUUGGAUCAGUAGUAUGAUCGUAUUUUACACCAA
...........(((.(((((((((((((((((((((.(((((..(....)..))))).)))))).)))))).))))))))).)))............... (-32.40)
....................CUGGCCAAGUGGUUGUUAUAUA.......................................................... len:22 al:1
....................CUGGCCAAGUGGUUGUUAUAU........................................................... len:21 al:2
....................................................aAUAUCACAGCCUGCUUGGAUCAGU....................... len:25 al:2
......................................................UAgCACAGCCUGCUUGGAUCAGU....................... len:23 al:1
......................................................UAUCAuAGCCUGCUUGGAUCAGU....................... len:23 al:4
......................................................UAUCACAGCCUGCcUGGAUCAGUA...................... len:24 al:6
......................................................UgUCACAGCCUGCUUGGAUCAGU....................... len:23 al:22
......................................................UAUCcCAGCCUGCUUGGAUCAG........................ len:22 al:2
......................................................UAUCACAGCCUGCUUGGAcCAGUA...................... len:24 al:4
......................................................aAUCACAGCCUGCUUGGAUCAGU....................... len:23 al:5
......................................................UAUCACAGCCUGCUUGGAUCAGUAGa.................... len:26 al:79
......................................................UAUCACAGuCUGCUUGGAUCAG........................ len:22 al:3
......................................................UAUCACAGCCUGCUUGGgUCAGUAG..................... len:25 al:1
......................................................UAUCACAGCCUGCUUGGAUCA......................... len:21 al:149
......................................................UAUCACAGCCUGCUUGGA............................ len:18 al:1
......................................................UAUCACAGCCUGCUcGGAUCA......................... len:21 al:1
......................................................UAUCACcGCCUGCUUGGAUC.......................... len:20 al:2
......................................................UAUCACAGCuUGCUUGGAUCA......................... len:21 al:1
......................................................UAUCACAGCCUGCUUGGAUCcGUA...................... len:24 al:3
......................................................UAUCACAGCCUGCUUGGAUCgGUA...................... len:24 al:5
......................................................UAUCACAGCCUGCUUGGgUCAGU....................... len:23 al:33
......................................................UAUCACAGCCUGCUUGGAUaAGU....................... len:23 al:1
......................................................UAUCACuGCCUGCUUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGCCUGuUUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGCuUGCUUGGAUC.......................... len:20 al:3
......................................................UAUCACgGCCUGCUUGGAUCAGUA...................... len:24 al:8
......................................................UAaCACAGCCUGCUUGGAUCAGU....................... len:23 al:2
......................................................UAUCACAGCCaGCUUGGAUCA......................... len:21 al:2
......................................................aAUCACAGCCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCACAGCCUGCUUGGgUCAGUA...................... len:24 al:8
......................................................UAcCACAGCCUGCUUGGAUCAGUA...................... len:24 al:7
......................................................UAUCACAGCCUaCUUGGAUCAGU....................... len:23 al:13
......................................................UAUCACAGCCUGCUUGGAUC.......................... len:20 al:2179
......................................................UAUCACAGCCUGCUUGGAUCAGUAGaA................... len:27 al:29
......................................................UAUCACAGCCcGCUUGGAUCAGUA...................... len:24 al:4
......................................................UAUCACAGCCcGCUUGGAUCAG........................ len:22 al:2
......................................................UAaCACAGCCUGCUUGGAUC.......................... len:20 al:1
......................................................UAUCACAGCCUGCUUGGAUCgG........................ len:22 al:2
......................................................UAUCACAGCCUGCgUGGAUCAGU....................... len:23 al:7
......................................................UAUCACAGCCUGCUUGGAUCAGUAuU.................... len:26 al:2
......................................................UuUCACAGCCUGCUUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGuCUGCUUGGAU........................... len:19 al:1
......................................................UAUCACAGCCUGCUgGGAUCAGU....................... len:23 al:9
......................................................UAUCACAGCCaGCUUGGAUCAGU....................... len:23 al:2
......................................................UAUCACuGCCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCACAGCCUGCUUGGgUCAG........................ len:22 al:2
......................................................UAUaACAGCCUGCUUGGAUCAGU....................... len:23 al:1
......................................................UAUCAuAGCCUGCUUGGAUC.......................... len:20 al:2
......................................................UAUCgCAGCCUGCUUGGAUCAGU....................... len:23 al:37
......................................................UAcCACAGCCUGCUUGGAUC.......................... len:20 al:7
......................................................UAUCACAGCCUGCUUGGAUCAGa....................... len:23 al:342
......................................................UAUuACAGCCUGCUUGGAUCAGU....................... len:23 al:11
......................................................UAUCACAGCCUGCUUGGAUCAa........................ len:22 al:31
......................................................UAUCAuAGCCUGCUUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGCCUGCUUaGAUCAGU....................... len:23 al:5
......................................................UAUCACAGCCUGCUUGGAUCAGUu...................... len:24 al:23
......................................................cAUCACAGCCUGCUUGGAUCAGUA...................... len:24 al:9
......................................................UAUCACAGCCUGCUUGGAUCAGU....................... len:23 al:8470
......................................................UAUCACAGCCUGCcUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGCCUGCUUGGAUCgGU....................... len:23 al:50
......................................................UAUCACAGCCUGCaUGGAUCAGU....................... len:23 al:3
......................................................UgUCACAGCCUGCUUGGAUCA......................... len:21 al:1
......................................................UAUCACAGCCUGCUUGGAgCAGU....................... len:23 al:2
......................................................UAUCACAGCCUGCUcGGAUCAGUA...................... len:24 al:4
......................................................UAUCACAGCCUGCUUuGAUCAGU....................... len:23 al:1
......................................................UAUCACAGCCUGCUUGGAgC.......................... len:20 al:3
......................................................UAUCcCAGCCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCACAGCCUGCUUGGAUCAGUAGU.................... len:26 al:3
......................................................UAUCACAGCCUGCUUGGAUCAu........................ len:22 al:7
......................................................UAUCACAGCCUGCUUGGAUCAGUA...................... len:24 al:1309
......................................................UAUCACAGuCUGCUUGGAUC.......................... len:20 al:8
......................................................UAUCACAGCCUGCUUGGuUCAGU....................... len:23 al:1
......................................................UAUCACAGCCUGuUUGGAUCAGU....................... len:23 al:34
......................................................UAUCACcGCCUGCUUGGAUCAGU....................... len:23 al:5
......................................................UAUCACAGCCUGCUUGGAUCAGUgG..................... len:25 al:1
......................................................UAUCcCAGCCUGCUUGGAUCAGU....................... len:23 al:1
......................................................UgUCACAGCCUGCUUGGAUCAG........................ len:22 al:2
......................................................UAUCACAGCCUGCUUGGcUCAGU....................... len:23 al:1
......................................................UAUCACAGCCUGCUUaGAUCAG........................ len:22 al:1
......................................................UAUCACAGCCcGCUUGGAUCAGUAG..................... len:25 al:1
......................................................UAUCACAGCCUGCUUGGAcCAG........................ len:22 al:1
......................................................cAUCACAGCCUGCUUGGAUCA......................... len:21 al:1
......................................................UAUCACAGCCUaCUUGGAUC.......................... len:20 al:1
......................................................UAUCACAGCCUGCUUGGAUCAGUAG..................... len:25 al:281
......................................................UAUCACAGCCUaCUUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGCCUGCUcGGAUC.......................... len:20 al:7
......................................................UAUCACAGCCUGCUUGGAUCAGUAu..................... len:25 al:113
......................................................UAUCACAGCCUGCUUGGAUCAG........................ len:22 al:370
......................................................UAUgACAGCCUGCUUGGAUCAGU....................... len:23 al:1
......................................................UAUCuCAGCCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCACAGCCUGCUgGGAUCAGUA...................... len:24 al:1
......................................................UAUCACAGCCaGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCgCAGCCUGCUUGGAUCA......................... len:21 al:1
......................................................UAUCuCAGCCUGCUUGGAUC.......................... len:20 al:2
......................................................UAUCACAGCCUGCUUGGAUCuGUA...................... len:24 al:2
......................................................UAUCACAGCCUGCUUGGAUCAGUAc..................... len:25 al:13
......................................................UAUCgCAGCCUGCUUGGAUC.......................... len:20 al:8
......................................................UAUCACAGCCUGCUUGGAUCcGU....................... len:23 al:6
......................................................UAUCACAGCuUGCUUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGCCaGCUUGGAU........................... len:19 al:1
......................................................UAUCACuGCCUGCUUGGAUCAGU....................... len:23 al:9
......................................................UAUCACAGCCUGgUUGGAUCAGU....................... len:23 al:1
......................................................UAUCACAGCCUGCUUGGgUC.......................... len:20 al:7
......................................................UAUCACgGCCUGCUUGGAUCAGU....................... len:23 al:71
......................................................UAUCACAGCCUuCUUGGAUC.......................... len:20 al:1
......................................................UAUCACAGCCUGCUUGGAUCAGUuG..................... len:25 al:1
......................................................UAUCACAGCCUGCgUGGAUCAG........................ len:22 al:1
......................................................UAUCACAGCCUGCUUGGAUCAGUAaU.................... len:26 al:62
......................................................UAUCACAGCCUGCUUGGAaCAGU....................... len:23 al:3
......................................................UAUCACAGCCUGCUUG.............................. len:16 al:5
......................................................UAUCACAGCaUGCUUGGAUC.......................... len:20 al:4
......................................................UcUCACAGCCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................cAUCACAGCCUGCUUGGAUCAG........................ len:22 al:2
......................................................UAUCACgGCCUGCUUGGAUCAGUAG..................... len:25 al:2
......................................................UAUCACAGCCUGCcUGGAUC.......................... len:20 al:8
......................................................UAUCACAGCCUGCUUGGAUCAGaA...................... len:24 al:28
......................................................UAUCACAGCCUGCUUGGAUCAGUAGaAU.................. len:28 al:1
......................................................UAUCACAGCCUGCUUGGAUCAGUg...................... len:24 al:5
......................................................UAUCACAaCCUGCUUGGAUCAGUAG..................... len:25 al:1
......................................................UAUCACAGCCUGCUUGGAUCu......................... len:21 al:5
......................................................UAUCuCAGCCUGCUUGGAUCAGUAG..................... len:25 al:1
......................................................UgUCACAGCCUGCUUGGAUCAGUA...................... len:24 al:3
......................................................UAUCACAGCCUGCUaGGAUCAGU....................... len:23 al:2
......................................................UAUCACAGCuUGCUUGGAUCAGU....................... len:23 al:4
......................................................cAUCACAGCCUGCUUGGAUC.......................... len:20 al:13
......................................................UAUCACAGCCUGCUUGGAUu.......................... len:20 al:171
......................................................UAUCACAGCCUGCUUGGAUCAGg....................... len:23 al:70
......................................................UAUCACAGCCUGuUUGGAUC.......................... len:20 al:3
......................................................UAUCACcGCCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCACAGCCUGCUUGGAcCA......................... len:21 al:1
......................................................UAUCACAGCCUGCUUGGuUC.......................... len:20 al:52
......................................................UAUCACAGCCUGCUUGaAUCAGUA...................... len:24 al:1
......................................................UAUCACAaCCUGCUUGGAUCAGU....................... len:23 al:7
......................................................UAUCACAGCCUGCUUGGuUCAG........................ len:22 al:13
......................................................UAUCACAGCCUGCUUGGAUCAaU....................... len:23 al:1
......................................................UAUCACAGCgUGCUUGGAUC.......................... len:20 al:2
......................................................UAUCACAGCCUGCUUGGAU........................... len:19 al:29
......................................................UAUCACAGCCUGCUUGGAUCAGc....................... len:23 al:856
......................................................UAUCACAGCCUGCUUGaAUCAGU....................... len:23 al:4
......................................................UAUCACAGCaUGCUUGGAUCAGUA...................... len:24 al:3
......................................................UAUCACAGuCUGCUUGGAUCAGU....................... len:23 al:28
......................................................UAUCACAGCCUGCUUGGAUCAGgA...................... len:24 al:2
......................................................UAUCACAGCCUGCUUGGAUCAGUc...................... len:24 al:1
......................................................UAUCACAGCCUGCgUGGAUC.......................... len:20 al:2
......................................................UAUCACAGCCUGCaUGGAUC.......................... len:20 al:2
......................................................UAUCACAGCCUGCUUGGAaCAGUA...................... len:24 al:1
......................................................UAgCACAGCCUGCUUGGAUC.......................... len:20 al:1
......................................................UAUCACAGCCUGCUUGGAcC.......................... len:20 al:9
......................................................UAUCACAGCCUGCUUGGAUuAG........................ len:22 al:1
......................................................UAcCACAGCCUGCUUGGAUCAG........................ len:22 al:3
......................................................UAUgACAGCCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCACAGCCUGCUUGGAUCAuUA...................... len:24 al:33
......................................................UAUCuCAGCCUGCUUGGAUCAGU....................... len:23 al:4
......................................................UAUCACAaCCUGCUUGGAUC.......................... len:20 al:1
......................................................UAUCACAGaCUGCUUGGAUCAGUA...................... len:24 al:1
......................................................UAUCgCAGCCUGCUUGGAUCAGUA...................... len:24 al:5
......................................................UAUCACAGCCUGgUUGGAUCAGUAG..................... len:25 al:1
......................................................UAUCACgGCCUGCUUGGAUCAG........................ len:22 al:3
......................................................UAUCACAGCCUGCUUGGAUCAGcA...................... len:24 al:3
......................................................UAUCACAGCCUGCUUGGAUuAGU....................... len:23 al:10
......................................................UAUCACAGCCUGCUUGGAUCAGUAa..................... len:25 al:296
......................................................UAUCACAGCCUGCUcGGAUCAGU....................... len:23 al:18
......................................................UAUCACAGCaUGCUUGGAUCAGU....................... len:23 al:3
......................................................UAUCACAGCCUGCUUGGAUCuG........................ len:22 al:1
......................................................UAUCACAGCCUGCUUGGAUCuGU....................... len:23 al:7
......................................................UAUCACAGCCUGCUUGGAUgAGU....................... len:23 al:12
......................................................UAUCACAGCCUGCUUGGAUa.......................... len:20 al:40
......................................................UAUCAaAGCCUGCUUGGAUCAGU....................... len:23 al:1
......................................................UAUCACAGCCUGCUUGGAUCAuU....................... len:23 al:13
......................................................UAUCACAGCuUGCUUGGAUCAGUA...................... len:24 al:6
......................................................UAUCACAGCCUGCUUGGAUCgGUAG..................... len:25 al:3
......................................................UAcCACAGCCUGCUUGGAUCAGU....................... len:23 al:34
......................................................UgUCACAGCCUGCUUGGAUC.......................... len:20 al:9
......................................................UAUCACAGCCUGCUUGGAcCAGU....................... len:23 al:17
......................................................UAUCACAGuCUGCUUGGAUCAGUAG..................... len:25 al:1
......................................................aAUCACAGCCUGCUUGGAUC.......................... len:20 al:1
......................................................UAUCACAGCCUGCUUGGAUCAc........................ len:22 al:2
......................................................UgUCACAGCCUGCUUGGAUCAGUAGU.................... len:26 al:1
......................................................UAUCACAGCCUGCUUGGAc........................... len:19 al:1
......................................................UAUCACAGCCUGCcUGGAUCAGUAG..................... len:25 al:1
......................................................UAUCACAGCCcGCUUGGAUCAGU....................... len:23 al:23
......................................................UAUCACAcCCUGCUUGGAUC.......................... len:20 al:1
......................................................UAUCACAGCCUGCcUGGAUCAGU....................... len:23 al:11
......................................................UAUCACgGCCUGCUUGGAUC.......................... len:20 al:19
......................................................UAUCACAGCCUGaUUGGAUCAGUA...................... len:24 al:1
......................................................cAUCACAGCCUGCUUGGAUCAGU....................... len:23 al:33
......................................................UAUCACAGCCcGCUUGGAUC.......................... len:20 al:7
......................................................UAUCACAGCCUGCUUGGAgCAGUA...................... len:24 al:1
......................................................UAUCACAGCuUGCUUGGAUCAGUAG..................... len:25 al:1
.......................................................AUCACAGCCUGCUUGGAUCAG........................ len:21 al:1
.......................................................AUCACAGCCUGCUUGGAUCAGUAGa.................... len:25 al:1
.......................................................AUCACAGCCUGCUUGGAUCAGU....................... len:22 al:6
.......................................................AUCACAGCCUGCUUGGAUCA......................... len:20 al:2
.......................................................AUCACAGCCUGCUUGGAUCAGa....................... len:22 al:1
.......................................................AUCACAGCCUGCUUGGAUC.......................... len:19 al:1
.........................................................CACAGCCUGCUUGGAUCAGUA...................... len:21 al:1
..........................................................ACAGCCUGCUUGGAUCAGa....................... len:19 al:2
..........................................................ACAGCCUGCUUGGAUCAGU....................... len:19 al:5
..........................................................ACAGCCUGCUUGGAUCAG........................ len:18 al:1
..........................................................ACAGCCUGCUUGGAUCAGUAaU.................... len:22 al:1
..........................................................ACAGCCUGCUUGGAUCAGUA...................... len:20 al:2
..........................................................ACAGCCUGCUUGGAUCAGc....................... len:19 al:1
..........................................................ACAGCCcGCUUGGAUCAGUA...................... len:20 al:1