Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026859070.1:333708-333808 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_15637.ps.pdf
Locus Name: Cluster_15637
GUUGAAUUUGAUUGUUAAAGCCAUCAAAAUGACUGUGAUAUGUUGUAAACAAUUCCUAUCACAGCCAGCUUUGAUGAGCUUUCAUAAUCUGUAACAUGCAG
((((.....((((((.((((((((((((.((.((((((((.((((....))))...)))))))).))..))))))).))))).))))))..))))...... (-32.30)
.UUGgAUUUGAUUGUUAAAGC................................................................................ len:20 al:2
..UGgAUUUGAUUGUUAAAGC................................................................................ len:19 al:15
...GAAUUUGAUUGUUAAAGC................................................................................ len:18 al:1
....................CCAUCAAAAUGACUGUGAUAUG........................................................... len:22 al:9
....................CCAUCAAAAUGACUGUGAUAU............................................................ len:21 al:2
.....................CAUCAAAAcGACUGUGAUAUG........................................................... len:21 al:4
.....................CAUCgAAAUGACUGUGAUAUG........................................................... len:21 al:6
.....................CAUCAAAcUGACUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGACUGUGAUAcG........................................................... len:21 al:8
.....................CAUCAAAAUGACUGcGAUAUG........................................................... len:21 al:4
.....................CAUCAAAAUGACUGUGgUAU............................................................ len:20 al:1
.....................CAUCcAAAUGACUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGgCUGUGAUAU............................................................ len:20 al:1
.....................CAUCAAAAUGACUGcGAUAU............................................................ len:20 al:1
.....................CAUCAAAAUGACUGUGAUuUG........................................................... len:21 al:2
.....................uAUCAAAAUGACUGUGAUAUG........................................................... len:21 al:6
.....................CAUCAAAAUGACUGUGAUAUG........................................................... len:21 al:1697
.....................CAUCAgAAUGACUGUGAUAUG........................................................... len:21 al:5
.....................CAUCAAAAUGACUGUGAUAUa........................................................... len:21 al:120
.....................CgUCAAAAUGACUGUGAUAU............................................................ len:20 al:2
.....................CuUCAAAAUGACUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGACUGUGAUgUG........................................................... len:21 al:7
.....................CAUCAAAAUGACUGUGAUAc............................................................ len:20 al:14
.....................CAUCAAAAUGACgGUGAUAU............................................................ len:20 al:1
.....................CAUCAAAAUGgCUGUGAUAUG........................................................... len:21 al:1
.....................CAcCAAAAUGACUGUGAUAUG........................................................... len:21 al:8
.....................CAUCAcAAUGACUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAgGACUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGACUGUGAUAg............................................................ len:20 al:1
.....................CAUCAAAAUGACUGUGAUAU............................................................ len:20 al:184
.....................CgUCAAAAUGACUGUGAUAUG........................................................... len:21 al:3
.....................CAUCAAAAUGACUGUaAUAUG........................................................... len:21 al:1
.....................CAUuAAAAUGACUGUGAUAUG........................................................... len:21 al:2
.....................CAUCAAAAUGACUGUGgUAUG........................................................... len:21 al:8
.....................CAUCAAAAUGACUGUGAUAa............................................................ len:20 al:2
.....................CAUCAAAAUGACUGUGAUA............................................................. len:19 al:21
.....................CAUCAAAAUaACUGUGAUAU............................................................ len:20 al:1
.....................CAUCAAAAUGACcGUGAUAUG........................................................... len:21 al:3
.....................CAUCAAAAUGACUGUGAUAUGa.......................................................... len:22 al:69
.....................CAUCAAAAUaACUGUGAUAUG........................................................... len:21 al:4
.....................CAUCAAAAUGACUGUGAUgU............................................................ len:20 al:1
.....................CAUCAAAAUGACUGUGAU.............................................................. len:18 al:5
.....................CAUCAAAAUGACUGUGAcAUG........................................................... len:21 al:2
.....................CAUCAAAAUGAgUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGACUGUGAUAgG........................................................... len:21 al:1
.....................CAUCAAAAUGAuUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGcCUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGACUGUGAc.............................................................. len:18 al:1
.....................CAUCAAAAUGACUGUGAUAUGg.......................................................... len:22 al:3
.....................CAUCAAAAUGACUGUGAUAUu........................................................... len:21 al:8
.....................CAUCAAgAUGACUGUGAUAUG........................................................... len:21 al:6
.....................CAUCAAAAUGACUGUGAUAUGc.......................................................... len:22 al:2
.....................CAUCAAAAUGACcGUGAU.............................................................. len:18 al:1
.....................CcUCAAAAUGACUGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGACUGUGAUAUGU.......................................................... len:22 al:3
.....................CAUCAAAgUGACUGUGAUAUG........................................................... len:21 al:4
.....................CAUCAAAAUGACaGUGAUAUG........................................................... len:21 al:1
.....................CAUCAAAAUGACUGUGAUAUGUUGUAAAC................................................... len:29 al:1
.....................CAUCAAAAUGAaUGUGAUAUG........................................................... len:21 al:1
......................AUCAAAAUGACUGUGAUAUG........................................................... len:20 al:11
......................AUCAAAAUGACUGUGAUAUa........................................................... len:20 al:1
......................AUCAAAAUGgCUGUGAUAUG........................................................... len:20 al:2
......................AUCAAAAUGACUGUGAUAgG........................................................... len:20 al:1
......................AUCAAAAUGACUGUGAUAU............................................................ len:19 al:1
.......................UCAAAAUGACUGUGAUAUG........................................................... len:19 al:2
........................CAAAAUGACUGUGAUAUG........................................................... len:18 al:1
....................................................UUCCUAUCACAGCCAGCUUUGAU.......................... len:23 al:1
.......................................................uUAUCACAGCCAGCUUUGAUGAGC...................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGAUaAGC...................... len:23 al:1
........................................................aAUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:2
........................................................UAUCACAGCCAGCUUUGAUGAGCUa.................... len:25 al:77
........................................................UAUCACAaCCAGCUUUGAUGAGC...................... len:23 al:3
........................................................UAUCgCAGCCAGCUUUGAUGAGCU..................... len:24 al:18
........................................................gAUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:2
........................................................UAUCACAGuCAGCUUUGAUGAGCU..................... len:24 al:3
........................................................UAUCACAGCCAGCgUUGAUGAGCU..................... len:24 al:5
........................................................UAUCACAGCCAGCUUUGAUGAGCg..................... len:24 al:4
........................................................UAUCACAGCCAGCUUUGAUGAGu...................... len:23 al:770
........................................................UAUCACAGCCAGCUgUGAUGAGCU..................... len:24 al:5
........................................................UAUCACAGCCAGCUUUGAUaAGCU..................... len:24 al:2
........................................................UAaCACAGCCAGCUUUGAUGAGCU..................... len:24 al:2
........................................................UAUCACAGCCAGCUUUGAUGAG....................... len:22 al:11
........................................................cAUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:13
........................................................UAUCACAGCCAGCUUUGgUGAGCU..................... len:24 al:20
........................................................UAUCACAGCuAGCUUUGAUGAGCU..................... len:24 al:11
........................................................UAUCACAGCCAGCUUUGAcGAGCU..................... len:24 al:7
........................................................UAUCACAGCCAGCUUUGgUGAGC...................... len:23 al:9
........................................................UAUCACAGCCAGCUUUGAUGAaC...................... len:23 al:2
........................................................UAUCACAGCCAuCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCuGCUUUGAUGAGCUUUCA................. len:28 al:2
........................................................UAUCACAGCCAGCcUUGAUGAGCU..................... len:24 al:17
........................................................UAUCACAGCCAGCUcUGAUGAGCU..................... len:24 al:11
........................................................UAUCACAGCgAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUcUGAUGAGC...................... len:23 al:2
........................................................gAUCACAGCCAGCUUUGAUGAGC...................... len:23 al:12
........................................................UAUCACAGCCAGCcUUGAUGAGC...................... len:23 al:13
........................................................UAUCACAGCCAGCUUUGAUGgGCUU.................... len:25 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGCUc.................... len:25 al:1
........................................................UAUCACAGCCAGCaUUGAUGAGC...................... len:23 al:1
........................................................UAUCACAGCCAGuUUUGAUGAGCU..................... len:24 al:4
........................................................UAcCACAGCCAGCUUUGAUGAGCU..................... len:24 al:17
........................................................UAUCACAGCCcGCUUUGAUGAGCUUU................... len:26 al:1
........................................................UAUCACAGCCAGCUUUGAUGgGC...................... len:23 al:15
........................................................UAcCACAGCCAGCUUUGAUGAGC...................... len:23 al:6
........................................................UAUCACAGCCAGCUUUGuUGAGCU..................... len:24 al:2
........................................................UAUCACAGCCuGCUUUGAUGAGCUUU................... len:26 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGa...................... len:23 al:52
........................................................UAUCACAGCuAGCUUUGAUGAGC...................... len:23 al:2
........................................................UAUCACAGCCAGCUUUGAUGAGCcUU................... len:26 al:6
........................................................UAUCACgGCCAGCUUUGAUGAGCUU.................... len:25 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGCUcU................... len:26 al:8
........................................................UAUCACAGCCAGCUUUGAcGAGC...................... len:23 al:2
........................................................UAUCACAGCCAGCUUcGAUGAGCU..................... len:24 al:7
........................................................UAUCACAGCCAGCUUUGAUGAGCUaU................... len:26 al:12
........................................................UAUCACAaCCAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUgGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGAUGuGCU..................... len:24 al:2
........................................................cAUCACAGCCAGCUUUGAUGAGC...................... len:23 al:5
........................................................UAUCACAGCCAGCUUUGAU.......................... len:19 al:6
........................................................UAUCACAGCCAGCUUUGAUGAGC...................... len:23 al:3496
........................................................UAUCACAGCCAGCUUUGAUGAGCUU.................... len:25 al:16
........................................................UAUCACAGCCAGCUUUGAUGAGCUgU................... len:26 al:1
........................................................UAUCACAGCCAaCUUUGAUGAGCU..................... len:24 al:2
........................................................UAUCACAGCCAGCUUUGAUGAGCUg.................... len:25 al:3
........................................................UAUCACAGCCAGCUUcGAUGAGC...................... len:23 al:2
........................................................aAUCACAGCCAGCUUUGAUGAGC...................... len:23 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:3248
........................................................UAUCACAGuCAGCUUUGAUGAGC...................... len:23 al:5
........................................................UAUCgCAGCCAGCUUUGAUGAGC...................... len:23 al:9
........................................................UAUCACAGCCAGCUUUGAUGAGCcU.................... len:25 al:19
........................................................UAgCACAGCCAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGAgGAGCU..................... len:24 al:4
........................................................UAUCACgGCCAGCUUUGAUGAGC...................... len:23 al:7
........................................................UAUCACAGCCAGCUUaGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGCa..................... len:24 al:100
........................................................UAUCACAGCCAGCUUUGAUGAGCaU.................... len:25 al:1
........................................................UAUCAuAGCCAGCUUUGAUGAGCU..................... len:24 al:5
........................................................UAUCACAGCCAGCUUUGAUGAGuU..................... len:24 al:5
........................................................UAUaACAGCCAGCUUUGAUGAGC...................... len:23 al:1
........................................................UAUCACgGCCAGCUUUGAUGAGCU..................... len:24 al:13
........................................................UAUCACAGCCAGCUUUGAUGA........................ len:21 al:1
........................................................UAUCACAGCCAGCUUUGAUG......................... len:20 al:54
........................................................UgUCACAGCCAGCUUUGAUGAGC...................... len:23 al:2
........................................................UAUuACAGCCAGCUUUGAUGAGCU..................... len:24 al:3
........................................................UAUCACAGCCAGCUUUGAUGAGg...................... len:23 al:4
........................................................UAUCACAGCCAGCUUUGAgGAGC...................... len:23 al:1
........................................................UAUCACAGCCAGCUUUGAUGgGCU..................... len:24 al:14
........................................................UAUCuCAGCCAGCUUUGAUGAGCU..................... len:24 al:2
........................................................UcUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGAUa......................... len:20 al:2
........................................................UAUCAuAGCCAGCUUUGAUGAGC...................... len:23 al:1
........................................................UAUCACAGCaAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCgGCUUUGAUGAGC...................... len:23 al:3
........................................................UAUCACAGCCAGCUUUGAUGAu....................... len:22 al:2
........................................................UAUCACcGCCAGCUUUGAUGAGCU..................... len:24 al:4
........................................................UgUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:8
........................................................UAUCACAGCCAGCUUUGAUGAGCUUUaAU................ len:29 al:1
........................................................UAUCACAGCCAGCUcUGAUG......................... len:20 al:1
........................................................UAUCcCAGCCAGCUUUGAUGAGCU..................... len:24 al:1
...........................................................CACuGCCAGCUUUGAUGAGC...................... len:20 al:1
............................................................ACAGCCAGCUUUGAUGAGC...................... len:19 al:5
............................................................ACAGCCAGCUUUGAUGAGCU..................... len:20 al:3
...............................................................................UUUCAUAAUCUGUAAuAUGC.. len:20 al:1